RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 TTC26A0AVF1 554 aa9.39□□□□□ -0.91
USP3-208ENST00000558285 TEX28O15482 410 aa9.39□□□□□ -0.91
USP3-208ENST00000558285 ODC1P11926 461 aa9.39□□□□□ -0.91
USP3-208ENST00000558285 TRIM21P19474 475 aaKnown RBP9.39□□□□□ -0.91
USP3-208ENST00000558285 FGFR3P22607 806 aa9.39□□□□□ -0.91
USP3-208ENST00000558285 LRPAP1P30533 357 aa9.39□□□□□ -0.91
USP3-208ENST00000558285 GTF2F1P35269 517 aaKnown RBP eCLIP9.39□□□□□ -0.91
USP3-208ENST00000558285 CLCNKBP51801 687 aa9.39□□□□□ -0.91
USP3-208ENST00000558285 AFF1P51825 1210 aaKnown RBP9.39□□□□□ -0.91
USP3-208ENST00000558285 ZP2Q05996 745 aa9.39□□□□□ -0.91
USP3-208ENST00000558285 PLD1Q13393 1074 aa9.39□□□□□ -0.91
USP3-208ENST00000558285 SLC10A6Q3KNW5 377 aa9.39□□□□□ -0.91
USP3-208ENST00000558285 PPM1LQ5SGD2 360 aa9.39□□□□□ -0.91
USP3-208ENST00000558285 RARS2Q5T160 578 aaKnown RBP9.39□□□□□ -0.91
USP3-208ENST00000558285 RNF168Q8IYW5 571 aaPredicted RBP9.39□□□□□ -0.91
USP3-208ENST00000558285 SLC22A17Q8WUG5 538 aa9.39□□□□□ -0.91
USP3-208ENST00000558285 AUTS2Q8WXX7 1259 aa9.39□□□□□ -0.91
USP3-208ENST00000558285 DNAJC19Q96DA6 116 aa9.39□□□□□ -0.91
USP3-208ENST00000558285 MAN1C1Q9NR34 630 aa9.39□□□□□ -0.91
USP3-208ENST00000558285 RMND1Q9NWS8 449 aa9.39□□□□□ -0.91
USP3-208ENST00000558285 TBC1D7Q9P0N9 293 aa9.39□□□□□ -0.91
USP3-208ENST00000558285 CPSF3Q9UKF6 684 aaKnown RBP9.39□□□□□ -0.91
USP3-208ENST00000558285 USP20Q9Y2K6 914 aa9.39□□□□□ -0.91
USP3-208ENST00000558285 ZFP37Q9Y6Q3 630 aaPredicted RBP9.39□□□□□ -0.91
USP3-208ENST00000558285 ZNF233A6NK53 670 aa9.38□□□□□ -0.91
USP3-208ENST00000558285 ABLIM1O14639 778 aa9.38□□□□□ -0.91
USP3-208ENST00000558285 DCXO43602 365 aa9.38□□□□□ -0.91
USP3-208ENST00000558285 EXTL3O43909 919 aa9.38□□□□□ -0.91
USP3-208ENST00000558285 LILRB3O75022 631 aa9.38□□□□□ -0.91
USP3-208ENST00000558285 PPP1R37O75864 691 aa9.38□□□□□ -0.91
USP3-208ENST00000558285 GLP2RO95838 553 aa9.38□□□□□ -0.91
USP3-208ENST00000558285 HOXA9P31269 272 aa9.38□□□□□ -0.91
USP3-208ENST00000558285 YWHAHQ04917 246 aaPredicted RBP9.38□□□□□ -0.91
USP3-208ENST00000558285 DLX2Q07687 328 aaPredicted RBP9.38□□□□□ -0.91
USP3-208ENST00000558285 MYO1EQ12965 1108 aa9.38□□□□□ -0.91
USP3-208ENST00000558285 KCNC3Q14003 757 aa9.38□□□□□ -0.91
USP3-208ENST00000558285 SV2CQ496J9 727 aa9.38□□□□□ -0.91
USP3-208ENST00000558285 ZC2HC1CQ53FD0 456 aaPredicted RBP9.38□□□□□ -0.91
USP3-208ENST00000558285 AXDND1Q5T1B0 1012 aaPredicted RBP9.38□□□□□ -0.91
USP3-208ENST00000558285 TPGS2Q68CL5 300 aa9.38□□□□□ -0.91
USP3-208ENST00000558285 GPR149Q86SP6 731 aa9.38□□□□□ -0.91
USP3-208ENST00000558285 THEM5Q8N1Q8 247 aa9.38□□□□□ -0.91
USP3-208ENST00000558285 GPD1LQ8N335 351 aa9.38□□□□□ -0.91
USP3-208ENST00000558285 CEP120Q8N960 986 aa9.38□□□□□ -0.91
USP3-208ENST00000558285 KREMEN2Q8NCW0 462 aa9.38□□□□□ -0.91
USP3-208ENST00000558285 HASPINQ8TF76 798 aa9.38□□□□□ -0.91
USP3-208ENST00000558285 NOC3LQ8WTT2 800 aaKnown RBP9.38□□□□□ -0.91
USP3-208ENST00000558285 BCL7CQ8WUZ0 217 aaPredicted RBP9.38□□□□□ -0.91
USP3-208ENST00000558285 SUSD6Q92537 303 aa9.38□□□□□ -0.91
USP3-208ENST00000558285 ZBTB45Q96K62 511 aaPredicted RBP9.38□□□□□ -0.91
USP3-208ENST00000558285 SUSD3Q96L08 255 aa9.38□□□□□ -0.91
USP3-208ENST00000558285 GPR62Q9BZJ7 368 aa9.38□□□□□ -0.91
USP3-208ENST00000558285 PCDHB8Q9UN66 801 aa9.38□□□□□ -0.91
USP3-208ENST00000558285 PCDHGC5Q9Y5F6 944 aa9.38□□□□□ -0.91
USP3-208ENST00000558285 OR6C75A6NL08 312 aa9.37□□□□□ -0.91
USP3-208ENST00000558285 LACTBL1A8MY62 500 aa9.37□□□□□ -0.91
USP3-208ENST00000558285 PRRG1O14668 218 aa9.37□□□□□ -0.91
USP3-208ENST00000558285 SMC2O95347 1197 aa9.37□□□□□ -0.91
USP3-208ENST00000558285 TNNC2P02585 160 aa9.37□□□□□ -0.91
USP3-208ENST00000558285 LRG1P02750 347 aa9.37□□□□□ -0.91
USP3-208ENST00000558285 EDN1P05305 212 aa9.37□□□□□ -0.91
USP3-208ENST00000558285 POU2F2P09086 479 aa9.37□□□□□ -0.91
USP3-208ENST00000558285 TMEM191BP0C7N4 346 aa9.37□□□□□ -0.91
USP3-208ENST00000558285 PFKFB1P16118 471 aa9.37□□□□□ -0.91
USP3-208ENST00000558285 EPCAMP16422 314 aa9.37□□□□□ -0.91
USP3-208ENST00000558285 AFMP43652 599 aa9.37□□□□□ -0.91
USP3-208ENST00000558285 SMARCB1Q12824 385 aa9.37□□□□□ -0.91
USP3-208ENST00000558285 RAB33AQ14088 237 aa9.37□□□□□ -0.91
USP3-208ENST00000558285 ENOX2Q16206 610 aaKnown RBP9.37□□□□□ -0.91
USP3-208ENST00000558285 CTXN3Q4LDR2 81 aa9.37□□□□□ -0.91
USP3-208ENST00000558285 SPATA1Q5VX52 437 aa9.37□□□□□ -0.91
USP3-208ENST00000558285 SASS6Q6UVJ0 657 aa9.37□□□□□ -0.91
USP3-208ENST00000558285 PALB2Q86YC2 1186 aa9.37□□□□□ -0.91
USP3-208ENST00000558285 LEMD2Q8NC56 503 aa9.37□□□□□ -0.91
USP3-208ENST00000558285 SMG7Q92540 1137 aaKnown RBP9.37□□□□□ -0.91
USP3-208ENST00000558285 ANKRD36BP1Q96IX9 119 aa9.37□□□□□ -0.91
USP3-208ENST00000558285 RPGRIP1Q96KN7 1286 aa9.37□□□□□ -0.91
USP3-208ENST00000558285 FNBP1Q96RU3 617 aa9.37□□□□□ -0.91
USP3-208ENST00000558285 RBAKQ9NYW8 714 aaPredicted RBP9.37□□□□□ -0.91
USP3-208ENST00000558285 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.37□□□□□ -0.91
USP3-208ENST00000558285 MTRRQ9UBK8 725 aa9.37□□□□□ -0.91
USP3-208ENST00000558285 SZT2Q5T011 3432 aa9.37□□□□□ -0.91
USP3-208ENST00000558285 MYH11P35749 1972 aa9.37□□□□□ -0.91
USP3-208ENST00000558285 TDRD15B5MCY1 1934 aaKnown RBP9.37□□□□□ -0.91
USP3-208ENST00000558285 PLXNA4Q9HCM2 1894 aa9.37□□□□□ -0.91
USP3-208ENST00000558285 B4GALT3O60512 393 aa9.36□□□□□ -0.91
USP3-208ENST00000558285 EFEMP2O95967 443 aa9.36□□□□□ -0.91
USP3-208ENST00000558285 ADRB2P07550 413 aa9.36□□□□□ -0.91
USP3-208ENST00000558285 CPB1P15086 417 aa9.36□□□□□ -0.91
USP3-208ENST00000558285 TYMPP19971 482 aa9.36□□□□□ -0.91
USP3-208ENST00000558285 ACOT2P49753 483 aa9.36□□□□□ -0.91
USP3-208ENST00000558285 TAF6P49848 677 aa9.36□□□□□ -0.91
USP3-208ENST00000558285 AP3M2P53677 418 aa9.36□□□□□ -0.91
USP3-208ENST00000558285 NAB2Q15742 525 aa9.36□□□□□ -0.91
USP3-208ENST00000558285 TMEM31Q5JXX7 168 aa9.36□□□□□ -0.91
USP3-208ENST00000558285 VARS2Q5ST30 1063 aaKnown RBP9.36□□□□□ -0.91
USP3-208ENST00000558285 IQCEQ6IPM2 695 aa9.36□□□□□ -0.91
USP3-208ENST00000558285 SYCE2Q6PIF2 218 aa9.36□□□□□ -0.91
USP3-208ENST00000558285 TMC5Q6UXY8 1006 aa9.36□□□□□ -0.91
USP3-208ENST00000558285 UBALD2Q8IYN6 164 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms