RNA–Protein interactions for RNA: ENST00000558172.5

LRRC28-204, Transcript of leucine rich repeat containing 28, humanhuman

TSL 5

Gene LRRC28, Length 644 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-204ENST00000558172 ADAM28Q9UKQ2 775 aa11.3□□□□□ -0.6
LRRC28-204ENST00000558172 AGAP1Q9UPQ3 857 aa11.3□□□□□ -0.6
LRRC28-204ENST00000558172 PRG3Q9Y2Y8 225 aaPredicted RBP11.3□□□□□ -0.6
LRRC28-204ENST00000558172 NUB1Q9Y5A7 615 aa11.3□□□□□ -0.6
LRRC28-204ENST00000558172 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.3□□□□□ -0.6
LRRC28-204ENST00000558172 VWA8A3KMH1 1905 aa11.3□□□□□ -0.6
LRRC28-204ENST00000558172 PTPRJQ12913 1337 aa11.3□□□□□ -0.6
LRRC28-204ENST00000558172 MYO7AQ13402 2215 aa11.29□□□□□ -0.6
LRRC28-204ENST00000558172 KCNJ18B7U540 433 aa11.29□□□□□ -0.6
LRRC28-204ENST00000558172 SOX1O00570 391 aaPredicted RBP11.29□□□□□ -0.6
LRRC28-204ENST00000558172 PMM2O15305 246 aa11.29□□□□□ -0.6
LRRC28-204ENST00000558172 P4HA2O15460 535 aa11.29□□□□□ -0.6
LRRC28-204ENST00000558172 N4BP1O75113 896 aaKnown RBP11.29□□□□□ -0.6
LRRC28-204ENST00000558172 KRT19P08727 400 aa11.29□□□□□ -0.6
LRRC28-204ENST00000558172 CDK11BP21127 795 aaKnown RBP11.29□□□□□ -0.6
LRRC28-204ENST00000558172 POLR2BP30876 1174 aaKnown RBP11.29□□□□□ -0.6
LRRC28-204ENST00000558172 ATICP31939 592 aa11.29□□□□□ -0.6
LRRC28-204ENST00000558172 PBX3P40426 434 aa11.29□□□□□ -0.6
LRRC28-204ENST00000558172 MTIF2P46199 727 aaKnown RBP11.29□□□□□ -0.6
LRRC28-204ENST00000558172 TAF6P49848 677 aa11.29□□□□□ -0.6
LRRC28-204ENST00000558172 GUCY2FP51841 1108 aa11.29□□□□□ -0.6
LRRC28-204ENST00000558172 PPP3CAQ08209 521 aa11.29□□□□□ -0.6
LRRC28-204ENST00000558172 CETN1Q12798 172 aa11.29□□□□□ -0.6
LRRC28-204ENST00000558172 MYO1EQ12965 1108 aa11.29□□□□□ -0.6
LRRC28-204ENST00000558172 BIRC3Q13489 604 aa11.29□□□□□ -0.6
LRRC28-204ENST00000558172 KCNJ12Q14500 433 aa11.29□□□□□ -0.6
LRRC28-204ENST00000558172 BMS1Q14692 1282 aaKnown RBP11.29□□□□□ -0.6
LRRC28-204ENST00000558172 NCAPHQ15003 741 aa11.29□□□□□ -0.6
LRRC28-204ENST00000558172 IQCB1Q15051 598 aa11.29□□□□□ -0.6
LRRC28-204ENST00000558172 SV2CQ496J9 727 aa11.29□□□□□ -0.6
LRRC28-204ENST00000558172 TCP11X2Q5H9J9 407 aa11.29□□□□□ -0.6
LRRC28-204ENST00000558172 CDKAL1Q5VV42 579 aa11.29□□□□□ -0.6
LRRC28-204ENST00000558172 C15orf39Q6ZRI6 1047 aa11.29□□□□□ -0.6
LRRC28-204ENST00000558172 SV2AQ7L0J3 742 aa11.29□□□□□ -0.6
LRRC28-204ENST00000558172 DDX53Q86TM3 631 aaKnown RBP11.29□□□□□ -0.6
LRRC28-204ENST00000558172 AOPEPQ8N6M6 819 aa11.29□□□□□ -0.6
LRRC28-204ENST00000558172 CXorf38Q8TB03 319 aa11.29□□□□□ -0.6
LRRC28-204ENST00000558172 FAM200AQ8TCP9 573 aa11.29□□□□□ -0.6
LRRC28-204ENST00000558172 ARNTL2Q8WYA1 636 aa11.29□□□□□ -0.6
LRRC28-204ENST00000558172 TAF4BQ92750 862 aa11.29□□□□□ -0.6
LRRC28-204ENST00000558172 SLC35C1Q96A29 364 aa11.29□□□□□ -0.6
LRRC28-204ENST00000558172 LMAN2LQ9H0V9 348 aa11.29□□□□□ -0.6
LRRC28-204ENST00000558172 FANCLQ9NW38 375 aa11.29□□□□□ -0.6
LRRC28-204ENST00000558172 MARCH5Q9NX47 278 aa11.29□□□□□ -0.6
LRRC28-204ENST00000558172 MTUS1Q9ULD2 1270 aa11.29□□□□□ -0.6
LRRC28-204ENST00000558172 SF3B1O75533 1304 aaKnown RBP eCLIP11.29□□□□□ -0.6
LRRC28-204ENST00000558172 LAMA2P24043 3122 aaKnown RBP11.29□□□□□ -0.6
LRRC28-204ENST00000558172 GOLGA6L19H0YKK7 550 aa11.28□□□□□ -0.6
LRRC28-204ENST00000558172 KIF4AO95239 1232 aa11.28□□□□□ -0.6
LRRC28-204ENST00000558172 STAU1O95793 577 aaKnown RBP11.28□□□□□ -0.6
LRRC28-204ENST00000558172 EFEMP2O95967 443 aa11.28□□□□□ -0.6
LRRC28-204ENST00000558172 CST3P01034 146 aaPredicted RBP11.28□□□□□ -0.6
LRRC28-204ENST00000558172 AFPP02771 609 aaKnown RBP11.28□□□□□ -0.6
LRRC28-204ENST00000558172 SOD2P04179 222 aa11.28□□□□□ -0.6
LRRC28-204ENST00000558172 ITGB1P05556 798 aa11.28□□□□□ -0.6
LRRC28-204ENST00000558172 TPM2P07951 284 aa11.28□□□□□ -0.6
LRRC28-204ENST00000558172 TRIM49P0CI25 452 aa11.28□□□□□ -0.6
LRRC28-204ENST00000558172 TRIM49CP0CI26 452 aa11.28□□□□□ -0.6
LRRC28-204ENST00000558172 GCLMP48507 274 aa11.28□□□□□ -0.6
LRRC28-204ENST00000558172 FMO5P49326 533 aa11.28□□□□□ -0.6
LRRC28-204ENST00000558172 AARSP49588 968 aaKnown RBP eCLIP11.28□□□□□ -0.6
LRRC28-204ENST00000558172 MXI1P50539 228 aa11.28□□□□□ -0.6
LRRC28-204ENST00000558172 LILRA4P59901 499 aa11.28□□□□□ -0.6
LRRC28-204ENST00000558172 KCNH2Q12809 1159 aa11.28□□□□□ -0.6
LRRC28-204ENST00000558172 MAN2A1Q16706 1144 aa11.28□□□□□ -0.6
LRRC28-204ENST00000558172 SGSM1Q2NKQ1 1148 aa11.28□□□□□ -0.6
LRRC28-204ENST00000558172 TDRD10Q5VZ19 366 aaKnown RBP11.28□□□□□ -0.6
LRRC28-204ENST00000558172 PDE12Q6L8Q7 609 aaKnown RBP11.28□□□□□ -0.6
LRRC28-204ENST00000558172 FUT10Q6P4F1 479 aa11.28□□□□□ -0.6
LRRC28-204ENST00000558172 CD300LGQ6UXG3 332 aa11.28□□□□□ -0.6
LRRC28-204ENST00000558172 DSTYKQ6XUX3 929 aa11.28□□□□□ -0.6
LRRC28-204ENST00000558172 DHX40Q8IX18 779 aaKnown RBP11.28□□□□□ -0.6
LRRC28-204ENST00000558172 GPR65Q8IYL9 337 aa11.28□□□□□ -0.6
LRRC28-204ENST00000558172 CCDC150Q8NCX0 1101 aa11.28□□□□□ -0.6
LRRC28-204ENST00000558172 SPPL3Q8TCT6 385 aa11.28□□□□□ -0.6
LRRC28-204ENST00000558172 RABGGTAQ92696 567 aa11.28□□□□□ -0.6
LRRC28-204ENST00000558172 LRCH3Q96II8 777 aa11.28□□□□□ -0.6
LRRC28-204ENST00000558172 MMRN2Q9H8L6 949 aa11.28□□□□□ -0.6
LRRC28-204ENST00000558172 CERS4Q9HA82 394 aa11.28□□□□□ -0.6
LRRC28-204ENST00000558172 CBX8Q9HC52 389 aa11.28□□□□□ -0.6
LRRC28-204ENST00000558172 CACNG4Q9UBN1 327 aa11.28□□□□□ -0.6
LRRC28-204ENST00000558172 SIX4Q9UIU6 781 aa11.28□□□□□ -0.6
LRRC28-204ENST00000558172 SSX2IPQ9Y2D8 614 aa11.28□□□□□ -0.6
LRRC28-204ENST00000558172 COL4A4P53420 1690 aaPredicted RBP11.27□□□□□ -0.6
LRRC28-204ENST00000558172 ATG2AQ2TAZ0 1938 aa11.27□□□□□ -0.6
LRRC28-204ENST00000558172 MTCL1Q9Y4B5 1905 aaKnown RBP11.27□□□□□ -0.6
LRRC28-204ENST00000558172 KPNA7A9QM74 516 aa11.27□□□□□ -0.61
LRRC28-204ENST00000558172 M0QZQ0 153 aa11.27□□□□□ -0.61
LRRC28-204ENST00000558172 SYN3O14994 580 aa11.27□□□□□ -0.61
LRRC28-204ENST00000558172 ZNF18P17022 549 aa11.27□□□□□ -0.61
LRRC28-204ENST00000558172 NCOA4Q13772 614 aa11.27□□□□□ -0.61
LRRC28-204ENST00000558172 PTPROQ16827 1216 aa11.27□□□□□ -0.61
LRRC28-204ENST00000558172 USP41Q3LFD5 358 aa11.27□□□□□ -0.61
LRRC28-204ENST00000558172 PDXDC1Q6P996 788 aa11.27□□□□□ -0.61
LRRC28-204ENST00000558172 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.27□□□□□ -0.61
LRRC28-204ENST00000558172 DPH6Q7L8W6 267 aa11.27□□□□□ -0.61
LRRC28-204ENST00000558172 SPRED2Q7Z698 418 aa11.27□□□□□ -0.61
LRRC28-204ENST00000558172 TMEM173Q86WV6 379 aaPredicted RBP11.27□□□□□ -0.61
LRRC28-204ENST00000558172 RNF168Q8IYW5 571 aaPredicted RBP11.27□□□□□ -0.61
LRRC28-204ENST00000558172 C3orf58Q8NDZ4 430 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 161.7 ms