RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 CYP26C1Q6V0L0 522 aa11.1□□□□□ -0.63
SCFD1-220ENST00000556486 FERMT3Q86UX7 667 aa11.1□□□□□ -0.63
SCFD1-220ENST00000556486 GPR65Q8IYL9 337 aa11.1□□□□□ -0.63
SCFD1-220ENST00000556486 SREK1Q8WXA9 508 aaKnown RBP11.1□□□□□ -0.63
SCFD1-220ENST00000556486 FGF13Q92913 245 aa11.1□□□□□ -0.63
SCFD1-220ENST00000556486 TNFRSF25Q93038 417 aa11.1□□□□□ -0.63
SCFD1-220ENST00000556486 TMEM143Q96AN5 459 aa11.1□□□□□ -0.63
SCFD1-220ENST00000556486 CPB2Q96IY4 423 aa11.1□□□□□ -0.63
SCFD1-220ENST00000556486 HSD17B14Q9BPX1 270 aa11.1□□□□□ -0.63
SCFD1-220ENST00000556486 DDX23Q9BUQ8 820 aaKnown RBP11.1□□□□□ -0.63
SCFD1-220ENST00000556486 SLC6A16Q9GZN6 736 aa11.1□□□□□ -0.63
SCFD1-220ENST00000556486 HEBP1Q9NRV9 189 aa11.1□□□□□ -0.63
SCFD1-220ENST00000556486 DPP7Q9UHL4 492 aa11.1□□□□□ -0.63
SCFD1-220ENST00000556486 CDH7Q9ULB5 785 aa11.1□□□□□ -0.63
SCFD1-220ENST00000556486 NDRG2Q9UN36 371 aaKnown RBP11.1□□□□□ -0.63
SCFD1-220ENST00000556486 CCNT1O60563 726 aaKnown RBP11.09□□□□□ -0.63
SCFD1-220ENST00000556486 LILRB5O75023 590 aa11.09□□□□□ -0.63
SCFD1-220ENST00000556486 SLITRK3O94933 977 aa11.09□□□□□ -0.63
SCFD1-220ENST00000556486 FAM13AO94988 1023 aa11.09□□□□□ -0.63
SCFD1-220ENST00000556486 CTDNEP1O95476 244 aa11.09□□□□□ -0.63
SCFD1-220ENST00000556486 ITGA4P13612 1032 aa11.09□□□□□ -0.63
SCFD1-220ENST00000556486 PTENP60484 403 aa11.09□□□□□ -0.63
SCFD1-220ENST00000556486 DSC1Q08554 894 aa11.09□□□□□ -0.63
SCFD1-220ENST00000556486 STK3Q13188 491 aa11.09□□□□□ -0.63
SCFD1-220ENST00000556486 ZBTB41Q5SVQ8 909 aa11.09□□□□□ -0.63
SCFD1-220ENST00000556486 PIK3AP1Q6ZUJ8 805 aa11.09□□□□□ -0.63
SCFD1-220ENST00000556486 CDR2LQ86X02 465 aaPredicted RBP11.09□□□□□ -0.63
SCFD1-220ENST00000556486 GPR161Q8N6U8 529 aaKnown RBP11.09□□□□□ -0.63
SCFD1-220ENST00000556486 RNF149Q8NC42 400 aa11.09□□□□□ -0.63
SCFD1-220ENST00000556486 WASF1Q92558 559 aa11.09□□□□□ -0.63
SCFD1-220ENST00000556486 PLA2G2FQ9BZM2 168 aa11.09□□□□□ -0.63
SCFD1-220ENST00000556486 SLKQ9H2G2 1235 aaPredicted RBP11.09□□□□□ -0.63
SCFD1-220ENST00000556486 PLEKHA4Q9H4M7 779 aa11.09□□□□□ -0.63
SCFD1-220ENST00000556486 XPNPEP1Q9NQW7 623 aa11.09□□□□□ -0.63
SCFD1-220ENST00000556486 ZNF358Q9NW07 568 aa11.09□□□□□ -0.63
SCFD1-220ENST00000556486 ZDHHC7Q9NXF8 308 aa11.09□□□□□ -0.63
SCFD1-220ENST00000556486 RGL1Q9NZL6 768 aa11.09□□□□□ -0.63
SCFD1-220ENST00000556486 KLK14Q9P0G3 267 aa11.09□□□□□ -0.63
SCFD1-220ENST00000556486 TPCN1Q9ULQ1 816 aa11.09□□□□□ -0.63
SCFD1-220ENST00000556486 SSX2IPQ9Y2D8 614 aa11.09□□□□□ -0.63
SCFD1-220ENST00000556486 IPPQ9Y573 584 aa11.09□□□□□ -0.63
SCFD1-220ENST00000556486 NOTCH4Q99466 2003 aa11.09□□□□□ -0.63
SCFD1-220ENST00000556486 ARID2Q68CP9 1835 aa11.09□□□□□ -0.63
SCFD1-220ENST00000556486 ADAM12O43184 909 aa11.08□□□□□ -0.64
SCFD1-220ENST00000556486 TSPAN1O60635 241 aa11.08□□□□□ -0.64
SCFD1-220ENST00000556486 DGAT1O75907 488 aa11.08□□□□□ -0.64
SCFD1-220ENST00000556486 FDPSP14324 419 aaKnown RBP11.08□□□□□ -0.64
SCFD1-220ENST00000556486 AKAP5P24588 427 aa11.08□□□□□ -0.64
SCFD1-220ENST00000556486 PRKCQQ04759 706 aa11.08□□□□□ -0.64
SCFD1-220ENST00000556486 SRSF5Q13243 272 aaKnown RBP11.08□□□□□ -0.64
SCFD1-220ENST00000556486 ANKRD1Q15327 319 aa11.08□□□□□ -0.64
SCFD1-220ENST00000556486 EARS2Q5JPH6 523 aaKnown RBP11.08□□□□□ -0.64
SCFD1-220ENST00000556486 RTP2Q5QGT7 225 aa11.08□□□□□ -0.64
SCFD1-220ENST00000556486 FUT10Q6P4F1 479 aa11.08□□□□□ -0.64
SCFD1-220ENST00000556486 NOTUMQ6P988 496 aa11.08□□□□□ -0.64
SCFD1-220ENST00000556486 LILRA6Q6PI73 481 aa11.08□□□□□ -0.64
SCFD1-220ENST00000556486 PAAF1Q9BRP4 392 aa11.08□□□□□ -0.64
SCFD1-220ENST00000556486 RBCK1Q9BYM8 510 aa11.08□□□□□ -0.64
SCFD1-220ENST00000556486 NXF3Q9H4D5 531 aaKnown RBP11.08□□□□□ -0.64
SCFD1-220ENST00000556486 CHST7Q9NS84 486 aa11.08□□□□□ -0.64
SCFD1-220ENST00000556486 GJB4Q9NTQ9 266 aa11.08□□□□□ -0.64
SCFD1-220ENST00000556486 ANKEF1Q9NU02 776 aa11.08□□□□□ -0.64
SCFD1-220ENST00000556486 SPEGQ15772 3267 aa11.08□□□□□ -0.64
SCFD1-220ENST00000556486 TICRRQ7Z2Z1 1910 aa11.07□□□□□ -0.64
SCFD1-220ENST00000556486 ZZEF1O43149 2961 aa11.07□□□□□ -0.64
SCFD1-220ENST00000556486 ERLIN2O94905 339 aa11.07□□□□□ -0.64
SCFD1-220ENST00000556486 BAG4O95429 457 aaKnown RBP11.07□□□□□ -0.64
SCFD1-220ENST00000556486 C8AP07357 584 aa11.07□□□□□ -0.64
SCFD1-220ENST00000556486 XRCC6P12956 609 aaKnown RBP eCLIP11.07□□□□□ -0.64
SCFD1-220ENST00000556486 HOXC13P31276 330 aa11.07□□□□□ -0.64
SCFD1-220ENST00000556486 ARL2P36404 184 aa11.07□□□□□ -0.64
SCFD1-220ENST00000556486 RAB15P59190 212 aa11.07□□□□□ -0.64
SCFD1-220ENST00000556486 DMWDQ09019 674 aa11.07□□□□□ -0.64
SCFD1-220ENST00000556486 TFDP1Q14186 410 aa11.07□□□□□ -0.64
SCFD1-220ENST00000556486 GRM2Q14416 872 aa11.07□□□□□ -0.64
SCFD1-220ENST00000556486 CCDC6Q16204 474 aa11.07□□□□□ -0.64
SCFD1-220ENST00000556486 USP41Q3LFD5 358 aa11.07□□□□□ -0.64
SCFD1-220ENST00000556486 XKR9Q5GH70 373 aa11.07□□□□□ -0.64
SCFD1-220ENST00000556486 PPM1LQ5SGD2 360 aa11.07□□□□□ -0.64
SCFD1-220ENST00000556486 MTSS1LQ765P7 747 aa11.07□□□□□ -0.64
SCFD1-220ENST00000556486 CEP57Q86XR8 500 aa11.07□□□□□ -0.64
SCFD1-220ENST00000556486 SLC7A14Q8TBB6 771 aa11.07□□□□□ -0.64
SCFD1-220ENST00000556486 HDAC7Q8WUI4 952 aa11.07□□□□□ -0.64
SCFD1-220ENST00000556486 NELL1Q92832 810 aa11.07□□□□□ -0.64
SCFD1-220ENST00000556486 MCRS1Q96EZ8 462 aa11.07□□□□□ -0.64
SCFD1-220ENST00000556486 DYDC2Q96IM9 177 aa11.07□□□□□ -0.64
SCFD1-220ENST00000556486 CSRNP2Q9H175 543 aa11.07□□□□□ -0.64
SCFD1-220ENST00000556486 PRMT8Q9NR22 394 aaPredicted RBP11.07□□□□□ -0.64
SCFD1-220ENST00000556486 ORC3Q9UBD5 711 aaPredicted RBP11.07□□□□□ -0.64
SCFD1-220ENST00000556486 FBXW11Q9UKB1 542 aa11.07□□□□□ -0.64
SCFD1-220ENST00000556486 ADAM28Q9UKQ2 775 aa11.07□□□□□ -0.64
SCFD1-220ENST00000556486 RAB23Q9ULC3 237 aa11.07□□□□□ -0.64
SCFD1-220ENST00000556486 PCDHA12Q9UN75 941 aa11.07□□□□□ -0.64
SCFD1-220ENST00000556486 GIT1Q9Y2X7 761 aa11.07□□□□□ -0.64
SCFD1-220ENST00000556486 ASPMQ8IZT6 3477 aa11.07□□□□□ -0.64
SCFD1-220ENST00000556486 VWA8A3KMH1 1905 aa11.06□□□□□ -0.64
SCFD1-220ENST00000556486 A0A1B0GUA9 196 aa11.06□□□□□ -0.64
SCFD1-220ENST00000556486 SHISA7A6NL88 538 aa11.06□□□□□ -0.64
SCFD1-220ENST00000556486 NRG2O14511 850 aaPredicted RBP11.06□□□□□ -0.64
SCFD1-220ENST00000556486 SLC30A4O14863 429 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms