RNA–Protein interactions for RNA: ENST00000554971.6

SHOX-204, Transcript of short stature homeobox, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHOX, Length 1,902 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-204ENST00000554971 HSP90B2PQ58FF3 399 aa18.7■□□□□ 0.58
SHOX-204ENST00000554971 TWF2Q6IBS0 349 aaKnown RBP18.7■□□□□ 0.58
SHOX-204ENST00000554971 NOTUMQ6P988 496 aa18.7■□□□□ 0.58
SHOX-204ENST00000554971 SLC17A8Q8NDX2 589 aa18.7■□□□□ 0.58
SHOX-204ENST00000554971 ZBTB45Q96K62 511 aaPredicted RBP18.7■□□□□ 0.58
SHOX-204ENST00000554971 TRAIPQ9BWF2 469 aa18.7■□□□□ 0.58
SHOX-204ENST00000554971 DAAM1Q9Y4D1 1078 aa18.7■□□□□ 0.58
SHOX-204ENST00000554971 UBE4BO95155 1302 aa18.7■□□□□ 0.58
SHOX-204ENST00000554971 H0YCG3 227 aa18.7■□□□□ 0.58
SHOX-204ENST00000554971 AFPP02771 609 aaKnown RBP18.7■□□□□ 0.58
SHOX-204ENST00000554971 ACTN1P12814 892 aa18.7■□□□□ 0.58
SHOX-204ENST00000554971 AXLP30530 894 aa18.7■□□□□ 0.58
SHOX-204ENST00000554971 PAFAH1B1P43034 410 aa18.7■□□□□ 0.58
SHOX-204ENST00000554971 POLR2FP61218 127 aaKnown RBP18.7■□□□□ 0.58
SHOX-204ENST00000554971 GLE1Q53GS7 698 aaKnown RBP18.7■□□□□ 0.58
SHOX-204ENST00000554971 TDRD12Q587J7 1177 aaKnown RBP18.7■□□□□ 0.58
SHOX-204ENST00000554971 FAM109BQ6ICB4 259 aaPredicted RBP18.7■□□□□ 0.58
SHOX-204ENST00000554971 FAM71BQ8TC56 605 aa18.7■□□□□ 0.58
SHOX-204ENST00000554971 MRPL4Q9BYD3 311 aaKnown RBP18.7■□□□□ 0.58
SHOX-204ENST00000554971 GANQ9H2C0 597 aa18.7■□□□□ 0.58
SHOX-204ENST00000554971 PRUNE2Q8WUY3 3088 aa18.7■□□□□ 0.58
SHOX-204ENST00000554971 A0A0U1RQF3 1178 aa18.69■□□□□ 0.58
SHOX-204ENST00000554971 MEIS3P2A8K0S8 358 aa18.69■□□□□ 0.58
SHOX-204ENST00000554971 ZBBXA8MT70 800 aa18.69■□□□□ 0.58
SHOX-204ENST00000554971 POLR3GO15318 223 aaPredicted RBP18.69■□□□□ 0.58
SHOX-204ENST00000554971 SRGAP2O75044 1071 aa18.69■□□□□ 0.58
SHOX-204ENST00000554971 PIGRP01833 764 aa18.69■□□□□ 0.58
SHOX-204ENST00000554971 AARSP49588 968 aaKnown RBP eCLIP18.69■□□□□ 0.58
SHOX-204ENST00000554971 FAM189BP81408 668 aa18.69■□□□□ 0.58
SHOX-204ENST00000554971 STRN3Q13033 797 aa18.69■□□□□ 0.58
SHOX-204ENST00000554971 NAB2Q15742 525 aa18.69■□□□□ 0.58
SHOX-204ENST00000554971 ATF7IP2Q5U623 682 aa18.69■□□□□ 0.58
SHOX-204ENST00000554971 STXBP4Q6ZWJ1 553 aa18.69■□□□□ 0.58
SHOX-204ENST00000554971 SLC24A5Q71RS6 500 aa18.69■□□□□ 0.58
SHOX-204ENST00000554971 OSBPL9Q96SU4 736 aa18.69■□□□□ 0.58
SHOX-204ENST00000554971 PCDHB13Q9Y5F0 798 aa18.69■□□□□ 0.58
SHOX-204ENST00000554971 CAPN6Q9Y6Q1 641 aa18.69■□□□□ 0.58
SHOX-204ENST00000554971 ANKRD63C9JTQ0 380 aa18.68■□□□□ 0.58
SHOX-204ENST00000554971 MOCS3O95396 460 aa18.68■□□□□ 0.58
SHOX-204ENST00000554971 SCP2P22307 547 aa18.68■□□□□ 0.58
SHOX-204ENST00000554971 ASIC2Q16515 512 aa18.68■□□□□ 0.58
SHOX-204ENST00000554971 PRPF38BQ5VTL8 546 aaKnown RBP18.68■□□□□ 0.58
SHOX-204ENST00000554971 CCNI2Q6ZMN8 369 aaPredicted RBP18.68■□□□□ 0.58
SHOX-204ENST00000554971 FMNL3Q8IVF7 1028 aa18.68■□□□□ 0.58
SHOX-204ENST00000554971 TDHQ8IZJ6 230 aa18.68■□□□□ 0.58
SHOX-204ENST00000554971 SMG8Q8ND04 991 aaKnown RBP18.68■□□□□ 0.58
SHOX-204ENST00000554971 RNPC3Q96LT9 517 aaKnown RBP18.68■□□□□ 0.58
SHOX-204ENST00000554971 FAM105AQ9NUU6 356 aa18.68■□□□□ 0.58
SHOX-204ENST00000554971 COLQQ9Y215 455 aaPredicted RBP18.68■□□□□ 0.58
SHOX-204ENST00000554971 TNFSF13BQ9Y275 285 aa18.68■□□□□ 0.58
SHOX-204ENST00000554971 HNRNPDLO14979 420 aaKnown RBP18.68■□□□□ 0.58
SHOX-204ENST00000554971 EPB41P11171 864 aaKnown RBP18.68■□□□□ 0.58
SHOX-204ENST00000554971 ADSSP30520 456 aa18.68■□□□□ 0.58
SHOX-204ENST00000554971 GFPT1Q06210 699 aaPredicted RBP18.68■□□□□ 0.58
SHOX-204ENST00000554971 KLHL30Q0D2K2 578 aa18.68■□□□□ 0.58
SHOX-204ENST00000554971 SLC27A1Q6PCB7 646 aa18.68■□□□□ 0.58
SHOX-204ENST00000554971 ZPBP2Q6X784 338 aa18.68■□□□□ 0.58
SHOX-204ENST00000554971 ZNF598Q86UK7 904 aaKnown RBP18.68■□□□□ 0.58
SHOX-204ENST00000554971 HVCN1Q96D96 273 aa18.68■□□□□ 0.58
SHOX-204ENST00000554971 CAPZA3Q96KX2 299 aa18.68■□□□□ 0.58
SHOX-204ENST00000554971 MKNK1Q9BUB5 465 aa18.68■□□□□ 0.58
SHOX-204ENST00000554971 PDE11AQ9HCR9 933 aa18.68■□□□□ 0.58
SHOX-204ENST00000554971 NLRC4Q9NPP4 1024 aa18.68■□□□□ 0.58
SHOX-204ENST00000554971 HES2Q9Y543 173 aa18.68■□□□□ 0.58
SHOX-204ENST00000554971 ANK1P16157 1881 aa18.68■□□□□ 0.58
SHOX-204ENST00000554971 EFCAB14O75071 495 aa18.67■□□□□ 0.58
SHOX-204ENST00000554971 ALCAMQ13740 583 aa18.67■□□□□ 0.58
SHOX-204ENST00000554971 IFI16Q16666 785 aaKnown RBP18.67■□□□□ 0.58
SHOX-204ENST00000554971 CEP120Q8N960 986 aa18.67■□□□□ 0.58
SHOX-204ENST00000554971 TOP1MTQ969P6 601 aa18.67■□□□□ 0.58
SHOX-204ENST00000554971 NXF3Q9H4D5 531 aaKnown RBP18.67■□□□□ 0.58
SHOX-204ENST00000554971 PCDHB2Q9Y5E7 798 aa18.67■□□□□ 0.58
SHOX-204ENST00000554971 XIRP2A4UGR9 3374 aa18.67■□□□□ 0.58
SHOX-204ENST00000554971 PDE2AO00408 941 aaPredicted RBP18.66■□□□□ 0.58
SHOX-204ENST00000554971 CES2O00748 559 aa18.66■□□□□ 0.58
SHOX-204ENST00000554971 TOM1L1O75674 476 aa18.66■□□□□ 0.58
SHOX-204ENST00000554971 GFPT2O94808 682 aa18.66■□□□□ 0.58
SHOX-204ENST00000554971 CLSTN1O94985 981 aa18.66■□□□□ 0.58
SHOX-204ENST00000554971 NPTXRO95502 500 aa18.66■□□□□ 0.58
SHOX-204ENST00000554971 PRKCIP41743 596 aa18.66■□□□□ 0.58
SHOX-204ENST00000554971 EXOC3L4Q17RC7 722 aa18.66■□□□□ 0.58
SHOX-204ENST00000554971 CCDC181Q5TID7 509 aa18.66■□□□□ 0.58
SHOX-204ENST00000554971 ECHDC2Q86YB7 292 aa18.66■□□□□ 0.58
SHOX-204ENST00000554971 SPATA4Q8NEY3 305 aa18.66■□□□□ 0.58
SHOX-204ENST00000554971 CDT1Q9H211 546 aa18.66■□□□□ 0.58
SHOX-204ENST00000554971 RNF39Q9H2S5 420 aa18.66■□□□□ 0.58
SHOX-204ENST00000554971 ANKFY1Q9P2R3 1169 aa18.66■□□□□ 0.58
SHOX-204ENST00000554971 ADAM21Q9UKJ8 722 aa18.66■□□□□ 0.58
SHOX-204ENST00000554971 IPPQ9Y573 584 aa18.66■□□□□ 0.58
SHOX-204ENST00000554971 PCDHGC5Q9Y5F6 944 aa18.66■□□□□ 0.58
SHOX-204ENST00000554971 SLC4A7Q9Y6M7 1214 aa18.66■□□□□ 0.58
SHOX-204ENST00000554971 GRID2IPA4D2P6 1211 aa18.66■□□□□ 0.58
SHOX-204ENST00000554971 GRXCR1A8MXD5 290 aa18.66■□□□□ 0.58
SHOX-204ENST00000554971 TGFB1I1O43294 461 aa18.66■□□□□ 0.58
SHOX-204ENST00000554971 FAM189A1O60320 539 aa18.66■□□□□ 0.58
SHOX-204ENST00000554971 ZNF623O75123 536 aa18.66■□□□□ 0.58
SHOX-204ENST00000554971 NR3C1P04150 777 aa18.66■□□□□ 0.58
SHOX-204ENST00000554971 IBSPP21815 317 aaPredicted RBP18.66■□□□□ 0.58
SHOX-204ENST00000554971 ABCD1P33897 745 aa18.66■□□□□ 0.58
SHOX-204ENST00000554971 CFAP221Q4G0U5 840 aa18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms