RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 FAM163BP0C2L3 166 aa13.04□□□□□ -0.32
SHMT2-207ENST00000553837 SFNP31947 248 aa13.04□□□□□ -0.32
SHMT2-207ENST00000553837 SKIV2L2P42285 1042 aaKnown RBP13.04□□□□□ -0.32
SHMT2-207ENST00000553837 IFNAR2P48551 515 aa13.04□□□□□ -0.32
SHMT2-207ENST00000553837 HMGCS2P54868 508 aa13.04□□□□□ -0.32
SHMT2-207ENST00000553837 DR1Q01658 176 aa13.04□□□□□ -0.32
SHMT2-207ENST00000553837 SP4Q02446 784 aa13.04□□□□□ -0.32
SHMT2-207ENST00000553837 SNRNP48Q6IEG0 339 aaKnown RBP13.04□□□□□ -0.32
SHMT2-207ENST00000553837 KIF2BQ8N4N8 673 aa13.04□□□□□ -0.32
SHMT2-207ENST00000553837 HELQQ8TDG4 1101 aa13.04□□□□□ -0.32
SHMT2-207ENST00000553837 RNF25Q96BH1 459 aaPredicted RBP13.04□□□□□ -0.32
SHMT2-207ENST00000553837 TRIM51Q9BSJ1 452 aa13.04□□□□□ -0.32
SHMT2-207ENST00000553837 RXFP1Q9HBX9 757 aa13.04□□□□□ -0.32
SHMT2-207ENST00000553837 XPNPEP1Q9NQW7 623 aa13.04□□□□□ -0.32
SHMT2-207ENST00000553837 ZNF214Q9UL59 606 aaPredicted RBP13.04□□□□□ -0.32
SHMT2-207ENST00000553837 DIS3Q9Y2L1 958 aaKnown RBP13.04□□□□□ -0.32
SHMT2-207ENST00000553837 DAAM1Q9Y4D1 1078 aa13.04□□□□□ -0.32
SHMT2-207ENST00000553837 DPPA5A6NC42 116 aa13.03□□□□□ -0.32
SHMT2-207ENST00000553837 PMM2O15305 246 aa13.03□□□□□ -0.32
SHMT2-207ENST00000553837 GJB6O95452 261 aa13.03□□□□□ -0.32
SHMT2-207ENST00000553837 PTPRAP18433 802 aa13.03□□□□□ -0.32
SHMT2-207ENST00000553837 DRG2P55039 364 aaKnown RBP13.03□□□□□ -0.32
SHMT2-207ENST00000553837 PTENP60484 403 aa13.03□□□□□ -0.32
SHMT2-207ENST00000553837 MXRA7P84157 204 aa13.03□□□□□ -0.32
SHMT2-207ENST00000553837 PRPF4BQ13523 1007 aaKnown RBP13.03□□□□□ -0.32
SHMT2-207ENST00000553837 SLC29A2Q14542 456 aa13.03□□□□□ -0.32
SHMT2-207ENST00000553837 TMEM132BQ14DG7 1078 aa13.03□□□□□ -0.32
SHMT2-207ENST00000553837 CMPK2Q5EBM0 449 aa13.03□□□□□ -0.32
SHMT2-207ENST00000553837 TAS1R3Q7RTX0 852 aa13.03□□□□□ -0.32
SHMT2-207ENST00000553837 ZDHHC14Q8IZN3 488 aa13.03□□□□□ -0.32
SHMT2-207ENST00000553837 PPM1KQ8N3J5 372 aa13.03□□□□□ -0.32
SHMT2-207ENST00000553837 SAMD3Q8N6K7 520 aa13.03□□□□□ -0.32
SHMT2-207ENST00000553837 TAS1R2Q8TE23 839 aa13.03□□□□□ -0.32
SHMT2-207ENST00000553837 FBF1Q8TES7 1133 aa13.03□□□□□ -0.32
SHMT2-207ENST00000553837 DYDC1Q8WWB3 177 aa13.03□□□□□ -0.32
SHMT2-207ENST00000553837 DHX38Q92620 1227 aaKnown RBP13.03□□□□□ -0.32
SHMT2-207ENST00000553837 NAP1L3Q99457 506 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-207ENST00000553837 TIPINQ9BVW5 301 aa13.03□□□□□ -0.32
SHMT2-207ENST00000553837 PDLIM7Q9NR12 457 aa13.03□□□□□ -0.32
SHMT2-207ENST00000553837 LMCD1Q9NZU5 365 aa13.03□□□□□ -0.32
SHMT2-207ENST00000553837 GGT7Q9UJ14 662 aa13.03□□□□□ -0.32
SHMT2-207ENST00000553837 PCDHA10Q9Y5I2 948 aa13.03□□□□□ -0.32
SHMT2-207ENST00000553837 GJA3Q9Y6H8 435 aa13.03□□□□□ -0.32
SHMT2-207ENST00000553837 ZNFX1Q9P2E3 1918 aaKnown RBP13.03□□□□□ -0.32
SHMT2-207ENST00000553837 SMIM23A6NLE4 172 aa13.03□□□□□ -0.32
SHMT2-207ENST00000553837 TMEM110-MUSTN1A8MSY1 372 aa13.03□□□□□ -0.32
SHMT2-207ENST00000553837 PDLIM1O00151 329 aa13.03□□□□□ -0.32
SHMT2-207ENST00000553837 NPTXRO95502 500 aa13.03□□□□□ -0.32
SHMT2-207ENST00000553837 GNAT1P11488 350 aa13.03□□□□□ -0.32
SHMT2-207ENST00000553837 CCND2P30279 289 aa13.03□□□□□ -0.32
SHMT2-207ENST00000553837 FMO1Q01740 532 aa13.03□□□□□ -0.32
SHMT2-207ENST00000553837 CETN1Q12798 172 aa13.03□□□□□ -0.32
SHMT2-207ENST00000553837 LBRQ14739 615 aaKnown RBP13.03□□□□□ -0.32
SHMT2-207ENST00000553837 CLUL1Q15846 466 aa13.03□□□□□ -0.32
SHMT2-207ENST00000553837 GNPTABQ3T906 1256 aa13.03□□□□□ -0.32
SHMT2-207ENST00000553837 SWSAP1Q6NVH7 229 aa13.03□□□□□ -0.32
SHMT2-207ENST00000553837 NLRX1Q86UT6 975 aa13.03□□□□□ -0.32
SHMT2-207ENST00000553837 CCDC60Q8IWA6 550 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-207ENST00000553837 SCYL3Q8IZE3 742 aa13.03□□□□□ -0.32
SHMT2-207ENST00000553837 ZNF280CQ8ND82 737 aa13.03□□□□□ -0.32
SHMT2-207ENST00000553837 B4GALNT2Q8NHY0 566 aa13.03□□□□□ -0.32
SHMT2-207ENST00000553837 FAM81AQ8TBF8 368 aa13.03□□□□□ -0.32
SHMT2-207ENST00000553837 SHC3Q92529 594 aa13.03□□□□□ -0.32
SHMT2-207ENST00000553837 DTNBP1Q96EV8 351 aa13.03□□□□□ -0.32
SHMT2-207ENST00000553837 BTBD6Q96KE9 485 aa13.03□□□□□ -0.32
SHMT2-207ENST00000553837 CEP170P1Q96L14 293 aa13.03□□□□□ -0.32
SHMT2-207ENST00000553837 PLEKHG4BQ96PX9 1271 aa13.03□□□□□ -0.32
SHMT2-207ENST00000553837 SENP7Q9BQF6 1050 aa13.03□□□□□ -0.32
SHMT2-207ENST00000553837 KMT5AQ9NQR1 393 aa13.03□□□□□ -0.32
SHMT2-207ENST00000553837 GINM1Q9NU53 330 aa13.03□□□□□ -0.32
SHMT2-207ENST00000553837 CTTNBP2NLQ9P2B4 639 aa13.03□□□□□ -0.32
SHMT2-207ENST00000553837 ZNF112Q9UJU3 913 aa13.03□□□□□ -0.32
SHMT2-207ENST00000553837 ARID2Q68CP9 1835 aa13.02□□□□□ -0.32
SHMT2-207ENST00000553837 BRCA1P38398 1863 aaKnown RBP13.02□□□□□ -0.32
SHMT2-207ENST00000553837 SRCAPQ6ZRS2 3230 aa13.02□□□□□ -0.33
SHMT2-207ENST00000553837 PEX10O60683 326 aa13.02□□□□□ -0.33
SHMT2-207ENST00000553837 GNAZP19086 355 aa13.02□□□□□ -0.33
SHMT2-207ENST00000553837 PCK1P35558 622 aa13.02□□□□□ -0.33
SHMT2-207ENST00000553837 HADHBP55084 474 aaKnown RBP13.02□□□□□ -0.33
SHMT2-207ENST00000553837 WNT7BP56706 349 aa13.02□□□□□ -0.33
SHMT2-207ENST00000553837 TGFB2P61812 414 aa13.02□□□□□ -0.33
SHMT2-207ENST00000553837 SNRPFP62306 86 aaKnown RBP13.02□□□□□ -0.33
SHMT2-207ENST00000553837 FSTL1Q12841 308 aa13.02□□□□□ -0.33
SHMT2-207ENST00000553837 DMP1Q13316 513 aaPredicted RBP13.02□□□□□ -0.33
SHMT2-207ENST00000553837 DHX34Q14147 1143 aaKnown RBP13.02□□□□□ -0.33
SHMT2-207ENST00000553837 TRIM68Q6AZZ1 485 aa13.02□□□□□ -0.33
SHMT2-207ENST00000553837 GALNT15Q8N3T1 639 aa13.02□□□□□ -0.33
SHMT2-207ENST00000553837 SLC16A10Q8TF71 515 aa13.02□□□□□ -0.33
SHMT2-207ENST00000553837 GPRASP2Q96D09 838 aa13.02□□□□□ -0.33
SHMT2-207ENST00000553837 MFSD14AQ96MC6 490 aa13.02□□□□□ -0.33
SHMT2-207ENST00000553837 FBXL18Q96ME1 805 aa13.02□□□□□ -0.33
SHMT2-207ENST00000553837 WRNIP1Q96S55 665 aa13.02□□□□□ -0.33
SHMT2-207ENST00000553837 NTPCRQ9BSD7 190 aaKnown RBP13.02□□□□□ -0.33
SHMT2-207ENST00000553837 PRDM16Q9HAZ2 1276 aa13.02□□□□□ -0.33
SHMT2-207ENST00000553837 TCEAL9Q9UHQ7 104 aa13.02□□□□□ -0.33
SHMT2-207ENST00000553837 ADAMTS5Q9UNA0 930 aa13.02□□□□□ -0.33
SHMT2-207ENST00000553837 PHIPQ8WWQ0 1821 aa13.02□□□□□ -0.33
SHMT2-207ENST00000553837 TCP11X1B4DZS4 312 aa13.01□□□□□ -0.33
SHMT2-207ENST00000553837 PYGLP06737 847 aa13.01□□□□□ -0.33
SHMT2-207ENST00000553837 CCNB1P14635 433 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms