RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 EXOC7Q9UPT5 735 aa11.17□□□□□ -0.62
CCDC88C-206ENST00000553437 USTQ9Y2C2 406 aa11.17□□□□□ -0.62
CCDC88C-206ENST00000553437 ARIH1Q9Y4X5 557 aaPredicted RBP11.17□□□□□ -0.62
CCDC88C-206ENST00000553437 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.17□□□□□ -0.62
CCDC88C-206ENST00000553437 M0QZQ0 153 aa11.16□□□□□ -0.62
CCDC88C-206ENST00000553437 PPEF2O14830 753 aa11.16□□□□□ -0.62
CCDC88C-206ENST00000553437 ZMYND10O75800 440 aa11.16□□□□□ -0.62
CCDC88C-206ENST00000553437 NFICP08651 508 aa11.16□□□□□ -0.62
CCDC88C-206ENST00000553437 CMA1P23946 247 aa11.16□□□□□ -0.62
CCDC88C-206ENST00000553437 OR1D2P34982 312 aa11.16□□□□□ -0.62
CCDC88C-206ENST00000553437 WNT7BP56706 349 aa11.16□□□□□ -0.62
CCDC88C-206ENST00000553437 ASIC1P78348 528 aa11.16□□□□□ -0.62
CCDC88C-206ENST00000553437 POSTNQ15063 836 aa11.16□□□□□ -0.62
CCDC88C-206ENST00000553437 TMEM31Q5JXX7 168 aa11.16□□□□□ -0.62
CCDC88C-206ENST00000553437 VARS2Q5ST30 1063 aaKnown RBP11.16□□□□□ -0.62
CCDC88C-206ENST00000553437 SLC8B1Q6J4K2 584 aa11.16□□□□□ -0.62
CCDC88C-206ENST00000553437 ELMSAN1Q6PJG2 1045 aa11.16□□□□□ -0.62
CCDC88C-206ENST00000553437 EPM2AIP1Q7L775 607 aaPredicted RBP11.16□□□□□ -0.62
CCDC88C-206ENST00000553437 ZDHHC14Q8IZN3 488 aa11.16□□□□□ -0.62
CCDC88C-206ENST00000553437 POMGNT1Q8WZA1 660 aa11.16□□□□□ -0.62
CCDC88C-206ENST00000553437 FAM212AQ96EL1 285 aa11.16□□□□□ -0.62
CCDC88C-206ENST00000553437 PRKD2Q9BZL6 878 aa11.16□□□□□ -0.62
CCDC88C-206ENST00000553437 WDR6Q9NNW5 1121 aaKnown RBP11.16□□□□□ -0.62
CCDC88C-206ENST00000553437 HPSEQ9Y251 543 aa11.16□□□□□ -0.62
CCDC88C-206ENST00000553437 DERAQ9Y315 318 aa11.16□□□□□ -0.62
CCDC88C-206ENST00000553437 NR2E1Q9Y466 385 aa11.16□□□□□ -0.62
CCDC88C-206ENST00000553437 NUB1Q9Y5A7 615 aa11.16□□□□□ -0.62
CCDC88C-206ENST00000553437 CDY1Q9Y6F8 540 aa11.16□□□□□ -0.62
CCDC88C-206ENST00000553437 FAM237AA0A1B0GTK4 181 aa11.15□□□□□ -0.62
CCDC88C-206ENST00000553437 ANO9A1A5B4 782 aa11.15□□□□□ -0.62
CCDC88C-206ENST00000553437 SPDYE4A6NLX3 237 aa11.15□□□□□ -0.62
CCDC88C-206ENST00000553437 PIRO00625 290 aa11.15□□□□□ -0.62
CCDC88C-206ENST00000553437 ACTN4O43707 911 aaKnown RBP11.15□□□□□ -0.62
CCDC88C-206ENST00000553437 N4BP1O75113 896 aaKnown RBP11.15□□□□□ -0.62
CCDC88C-206ENST00000553437 ABLIM3O94929 683 aa11.15□□□□□ -0.62
CCDC88C-206ENST00000553437 SLFN14P0C7P3 912 aa11.15□□□□□ -0.62
CCDC88C-206ENST00000553437 GARTP22102 1010 aa11.15□□□□□ -0.62
CCDC88C-206ENST00000553437 MCM4P33991 863 aa11.15□□□□□ -0.62
CCDC88C-206ENST00000553437 KRT85P78386 507 aa11.15□□□□□ -0.62
CCDC88C-206ENST00000553437 ZXDAP98168 799 aa11.15□□□□□ -0.62
CCDC88C-206ENST00000553437 CUL4BQ13620 913 aa11.15□□□□□ -0.62
CCDC88C-206ENST00000553437 CCDC149Q6ZUS6 474 aa11.15□□□□□ -0.62
CCDC88C-206ENST00000553437 UNC13DQ70J99 1090 aa11.15□□□□□ -0.62
CCDC88C-206ENST00000553437 GRAMD1CQ8IYS0 662 aa11.15□□□□□ -0.62
CCDC88C-206ENST00000553437 SYCP3Q8IZU3 236 aa11.15□□□□□ -0.62
CCDC88C-206ENST00000553437 BEST2Q8NFU1 509 aa11.15□□□□□ -0.62
CCDC88C-206ENST00000553437 SMG7Q92540 1137 aaKnown RBP11.15□□□□□ -0.62
CCDC88C-206ENST00000553437 EDAQ92838 391 aa11.15□□□□□ -0.62
CCDC88C-206ENST00000553437 SPATA32Q96LK8 384 aa11.15□□□□□ -0.62
CCDC88C-206ENST00000553437 CBWD1Q9BRT8 395 aa11.15□□□□□ -0.62
CCDC88C-206ENST00000553437 FAM213AQ9BRX8 229 aa11.15□□□□□ -0.62
CCDC88C-206ENST00000553437 BLZF1Q9H2G9 400 aa11.15□□□□□ -0.62
CCDC88C-206ENST00000553437 TMEM206Q9H813 350 aa11.15□□□□□ -0.62
CCDC88C-206ENST00000553437 SERTAD1Q9UHV2 236 aa11.15□□□□□ -0.62
CCDC88C-206ENST00000553437 FBXL5Q9UKA1 691 aa11.15□□□□□ -0.62
CCDC88C-206ENST00000553437 PCDHB8Q9UN66 801 aa11.15□□□□□ -0.62
CCDC88C-206ENST00000553437 C2CD2Q9Y426 696 aa11.15□□□□□ -0.62
CCDC88C-206ENST00000553437 TDRD15B5MCY1 1934 aaKnown RBP11.15□□□□□ -0.62
CCDC88C-206ENST00000553437 USP34Q70CQ2 3546 aa11.14□□□□□ -0.63
CCDC88C-206ENST00000553437 A0A1B0GVL5 298 aa11.14□□□□□ -0.63
CCDC88C-206ENST00000553437 PVALEFA0A1B0GWK0 134 aa11.14□□□□□ -0.63
CCDC88C-206ENST00000553437 PRR33A8MZF0 331 aa11.14□□□□□ -0.63
CCDC88C-206ENST00000553437 H7C4K7 107 aa11.14□□□□□ -0.63
CCDC88C-206ENST00000553437 SPTLC1O15269 473 aa11.14□□□□□ -0.63
CCDC88C-206ENST00000553437 XPOTO43592 962 aaKnown RBP11.14□□□□□ -0.63
CCDC88C-206ENST00000553437 EXTL3O43909 919 aa11.14□□□□□ -0.63
CCDC88C-206ENST00000553437 OAZ2O95190 189 aa11.14□□□□□ -0.63
CCDC88C-206ENST00000553437 IL18RAPO95256 599 aa11.14□□□□□ -0.63
CCDC88C-206ENST00000553437 C8AP07357 584 aa11.14□□□□□ -0.63
CCDC88C-206ENST00000553437 POU2F2P09086 479 aa11.14□□□□□ -0.63
CCDC88C-206ENST00000553437 HNRNPA1P09651 372 aaKnown RBP eCLIP11.14□□□□□ -0.63
CCDC88C-206ENST00000553437 PFKFB1P16118 471 aa11.14□□□□□ -0.63
CCDC88C-206ENST00000553437 HOXA9P31269 272 aa11.14□□□□□ -0.63
CCDC88C-206ENST00000553437 AFMP43652 599 aa11.14□□□□□ -0.63
CCDC88C-206ENST00000553437 LILRA4P59901 499 aa11.14□□□□□ -0.63
CCDC88C-206ENST00000553437 ROR1Q01973 937 aa11.14□□□□□ -0.63
CCDC88C-206ENST00000553437 BECN1Q14457 450 aa11.14□□□□□ -0.63
CCDC88C-206ENST00000553437 TMEM132DQ14C87 1099 aa11.14□□□□□ -0.63
CCDC88C-206ENST00000553437 PTPN21Q16825 1174 aa11.14□□□□□ -0.63
CCDC88C-206ENST00000553437 UVSSAQ2YD98 709 aa11.14□□□□□ -0.63
CCDC88C-206ENST00000553437 FAM26FQ5R3K3 315 aa11.14□□□□□ -0.63
CCDC88C-206ENST00000553437 C9orf57Q5W0N0 161 aa11.14□□□□□ -0.63
CCDC88C-206ENST00000553437 OTOP3Q7RTS5 596 aa11.14□□□□□ -0.63
CCDC88C-206ENST00000553437 BRSK2Q8IWQ3 736 aa11.14□□□□□ -0.63
CCDC88C-206ENST00000553437 EFCAB13Q8IY85 973 aa11.14□□□□□ -0.63
CCDC88C-206ENST00000553437 PLCD3Q8N3E9 789 aa11.14□□□□□ -0.63
CCDC88C-206ENST00000553437 TDRD5Q8NAT2 981 aaKnown RBP11.14□□□□□ -0.63
CCDC88C-206ENST00000553437 APPL2Q8NEU8 664 aa11.14□□□□□ -0.63
CCDC88C-206ENST00000553437 ZNF461Q8TAF7 563 aa11.14□□□□□ -0.63
CCDC88C-206ENST00000553437 ZNF507Q8TCN5 953 aa11.14□□□□□ -0.63
CCDC88C-206ENST00000553437 SCFD1Q8WVM8 642 aa11.14□□□□□ -0.63
CCDC88C-206ENST00000553437 SAAL1Q96ER3 474 aa11.14□□□□□ -0.63
CCDC88C-206ENST00000553437 PAGE5Q96GU1 130 aa11.14□□□□□ -0.63
CCDC88C-206ENST00000553437 PYM1Q9BRP8 204 aaKnown RBP11.14□□□□□ -0.63
CCDC88C-206ENST00000553437 LIMD1Q9UGP4 676 aa11.14□□□□□ -0.63
CCDC88C-206ENST00000553437 CFAP54Q96N23 3096 aa11.14□□□□□ -0.63
CCDC88C-206ENST00000553437 CLUHO75153 1309 aa11.13□□□□□ -0.63
CCDC88C-206ENST00000553437 WDR27A2RRH5 827 aa11.13□□□□□ -0.63
CCDC88C-206ENST00000553437 GOLGA8IPA6NC78 632 aa11.13□□□□□ -0.63
CCDC88C-206ENST00000553437 GOLGA8JA6NMD2 632 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms