RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 TIPINQ9BVW5 301 aa7.77□□□□□ -1.17
DEPDC4-208ENST00000549341 KLF16Q9BXK1 252 aaPredicted RBP7.77□□□□□ -1.17
DEPDC4-208ENST00000549341 ZSWIM4Q9H7M6 989 aa7.77□□□□□ -1.17
DEPDC4-208ENST00000549341 KCNH7Q9NS40 1196 aa7.77□□□□□ -1.17
DEPDC4-208ENST00000549341 BLOC1S4Q9NUP1 217 aa7.77□□□□□ -1.17
DEPDC4-208ENST00000549341 PANK4Q9NVE7 773 aa7.77□□□□□ -1.17
DEPDC4-208ENST00000549341 SPATA6Q9NWH7 488 aaPredicted RBP7.77□□□□□ -1.17
DEPDC4-208ENST00000549341 VAV3Q9UKW4 847 aa7.77□□□□□ -1.17
DEPDC4-208ENST00000549341 SIT1Q9Y3P8 196 aa7.77□□□□□ -1.17
DEPDC4-208ENST00000549341 NFE2L3Q9Y4A8 694 aa7.77□□□□□ -1.17
DEPDC4-208ENST00000549341 PCDHA2Q9Y5H9 948 aa7.77□□□□□ -1.17
DEPDC4-208ENST00000549341 ZZEF1O43149 2961 aa7.77□□□□□ -1.17
DEPDC4-208ENST00000549341 NFASCO94856 1347 aa7.77□□□□□ -1.17
DEPDC4-208ENST00000549341 FLNBO75369 2602 aaKnown RBP7.76□□□□□ -1.17
DEPDC4-208ENST00000549341 SMIM35A0A1B0GVV1 85 aa7.76□□□□□ -1.17
DEPDC4-208ENST00000549341 MYMKA6NI61 221 aa7.76□□□□□ -1.17
DEPDC4-208ENST00000549341 PRR5-ARHGAP8B1AHC4 643 aa7.76□□□□□ -1.17
DEPDC4-208ENST00000549341 GPR182O15218 404 aa7.76□□□□□ -1.17
DEPDC4-208ENST00000549341 SPTLC1O15269 473 aa7.76□□□□□ -1.17
DEPDC4-208ENST00000549341 N4BP1O75113 896 aaKnown RBP7.76□□□□□ -1.17
DEPDC4-208ENST00000549341 MED24O75448 989 aa7.76□□□□□ -1.17
DEPDC4-208ENST00000549341 IGHA1P01876 353 aa7.76□□□□□ -1.17
DEPDC4-208ENST00000549341 PSAPP07602 524 aa7.76□□□□□ -1.17
DEPDC4-208ENST00000549341 TPM1P09493 284 aa7.76□□□□□ -1.17
DEPDC4-208ENST00000549341 ITGB5P18084 799 aa7.76□□□□□ -1.17
DEPDC4-208ENST00000549341 QARSP47897 775 aaKnown RBP7.76□□□□□ -1.17
DEPDC4-208ENST00000549341 ALDH7A1P49419 539 aaKnown RBP7.76□□□□□ -1.17
DEPDC4-208ENST00000549341 UBASH3AP57075 661 aa7.76□□□□□ -1.17
DEPDC4-208ENST00000549341 ARHGAP8P85298 464 aa7.76□□□□□ -1.17
DEPDC4-208ENST00000549341 FANCCQ00597 558 aa7.76□□□□□ -1.17
DEPDC4-208ENST00000549341 CSTF1Q05048 431 aaKnown RBP7.76□□□□□ -1.17
DEPDC4-208ENST00000549341 SPIRE1Q08AE8 756 aa7.76□□□□□ -1.17
DEPDC4-208ENST00000549341 ACAP1Q15027 740 aa7.76□□□□□ -1.17
DEPDC4-208ENST00000549341 LPAL2Q16609 132 aa7.76□□□□□ -1.17
DEPDC4-208ENST00000549341 LINC01559Q495D7 138 aa7.76□□□□□ -1.17
DEPDC4-208ENST00000549341 CLLU1OSQ5K130 101 aa7.76□□□□□ -1.17
DEPDC4-208ENST00000549341 MIS18BP1Q6P0N0 1132 aa7.76□□□□□ -1.17
DEPDC4-208ENST00000549341 FOXR2Q6PJQ5 311 aa7.76□□□□□ -1.17
DEPDC4-208ENST00000549341 OTUD6AQ7L8S5 288 aa7.76□□□□□ -1.17
DEPDC4-208ENST00000549341 DYMQ7RTS9 669 aa7.76□□□□□ -1.17
DEPDC4-208ENST00000549341 GPR149Q86SP6 731 aa7.76□□□□□ -1.17
DEPDC4-208ENST00000549341 HELQQ8TDG4 1101 aa7.76□□□□□ -1.17
DEPDC4-208ENST00000549341 DYDC2Q96IM9 177 aa7.76□□□□□ -1.17
DEPDC4-208ENST00000549341 SCLT1Q96NL6 688 aa7.76□□□□□ -1.17
DEPDC4-208ENST00000549341 PCYT2Q99447 389 aa7.76□□□□□ -1.17
DEPDC4-208ENST00000549341 RTKNQ9BST9 563 aa7.76□□□□□ -1.17
DEPDC4-208ENST00000549341 ZBP1Q9H171 429 aa7.76□□□□□ -1.17
DEPDC4-208ENST00000549341 UNC45AQ9H3U1 944 aa7.76□□□□□ -1.17
DEPDC4-208ENST00000549341 ZHX3Q9H4I2 956 aa7.76□□□□□ -1.17
DEPDC4-208ENST00000549341 RNF19AQ9NV58 838 aa7.76□□□□□ -1.17
DEPDC4-208ENST00000549341 IGSF9Q9P2J2 1179 aa7.76□□□□□ -1.17
DEPDC4-208ENST00000549341 IMPACTQ9P2X3 320 aa7.76□□□□□ -1.17
DEPDC4-208ENST00000549341 SEL1LQ9UBV2 794 aa7.76□□□□□ -1.17
DEPDC4-208ENST00000549341 WNT16Q9UBV4 365 aa7.76□□□□□ -1.17
DEPDC4-208ENST00000549341 KCNG1Q9UIX4 513 aa7.76□□□□□ -1.17
DEPDC4-208ENST00000549341 CTNND2Q9UQB3 1225 aa7.76□□□□□ -1.17
DEPDC4-208ENST00000549341 COL4A3BPQ9Y5P4 624 aa7.76□□□□□ -1.17
DEPDC4-208ENST00000549341 PLXNA4Q9HCM2 1894 aa7.76□□□□□ -1.17
DEPDC4-208ENST00000549341 KIAA1217Q5T5P2 1943 aa7.76□□□□□ -1.17
DEPDC4-208ENST00000549341 ASPMQ8IZT6 3477 aa7.75□□□□□ -1.17
DEPDC4-208ENST00000549341 SPEGQ15772 3267 aa7.75□□□□□ -1.17
DEPDC4-208ENST00000549341 A0A087WWV3 80 aa7.75□□□□□ -1.17
DEPDC4-208ENST00000549341 E9PMD0 336 aa7.75□□□□□ -1.17
DEPDC4-208ENST00000549341 DDX39AO00148 427 aaKnown RBP7.75□□□□□ -1.17
DEPDC4-208ENST00000549341 BACH1O14867 736 aa7.75□□□□□ -1.17
DEPDC4-208ENST00000549341 LAMTOR5O43504 91 aa7.75□□□□□ -1.17
DEPDC4-208ENST00000549341 KLRC4O43908 158 aa7.75□□□□□ -1.17
DEPDC4-208ENST00000549341 FAM13AO94988 1023 aa7.75□□□□□ -1.17
DEPDC4-208ENST00000549341 VTNP04004 478 aa7.75□□□□□ -1.17
DEPDC4-208ENST00000549341 SRFP11831 508 aa7.75□□□□□ -1.17
DEPDC4-208ENST00000549341 PRKCSHP14314 528 aaPredicted RBP7.75□□□□□ -1.17
DEPDC4-208ENST00000549341 GLULP15104 373 aa7.75□□□□□ -1.17
DEPDC4-208ENST00000549341 CCNE1P24864 410 aa7.75□□□□□ -1.17
DEPDC4-208ENST00000549341 KLRC1P26715 233 aa7.75□□□□□ -1.17
DEPDC4-208ENST00000549341 KLRC2P26717 231 aa7.75□□□□□ -1.17
DEPDC4-208ENST00000549341 CASP1P29466 404 aa7.75□□□□□ -1.17
DEPDC4-208ENST00000549341 ABCD1P33897 745 aa7.75□□□□□ -1.17
DEPDC4-208ENST00000549341 CLCN1P35523 988 aa7.75□□□□□ -1.17
DEPDC4-208ENST00000549341 PRCPP42785 496 aa7.75□□□□□ -1.17
DEPDC4-208ENST00000549341 SLC12A3P55017 1021 aa7.75□□□□□ -1.17
DEPDC4-208ENST00000549341 BCAR1P56945 870 aa7.75□□□□□ -1.17
DEPDC4-208ENST00000549341 PSMC5P62195 406 aa7.75□□□□□ -1.17
DEPDC4-208ENST00000549341 CYP4A11Q02928 519 aa7.75□□□□□ -1.17
DEPDC4-208ENST00000549341 LRRC63Q05C16 580 aa7.75□□□□□ -1.17
DEPDC4-208ENST00000549341 ALCAMQ13740 583 aa7.75□□□□□ -1.17
DEPDC4-208ENST00000549341 PTPN14Q15678 1187 aa7.75□□□□□ -1.17
DEPDC4-208ENST00000549341 FAM26FQ5R3K3 315 aa7.75□□□□□ -1.17
DEPDC4-208ENST00000549341 ODR4Q5SWX8 454 aa7.75□□□□□ -1.17
DEPDC4-208ENST00000549341 DCLRE1AQ6PJP8 1040 aa7.75□□□□□ -1.17
DEPDC4-208ENST00000549341 GET4Q7L5D6 327 aaPredicted RBP7.75□□□□□ -1.17
DEPDC4-208ENST00000549341 TRMT1LQ7Z2T5 733 aaKnown RBP7.75□□□□□ -1.17
DEPDC4-208ENST00000549341 NME8Q8N427 588 aa7.75□□□□□ -1.17
DEPDC4-208ENST00000549341 GUF1Q8N442 669 aaKnown RBP7.75□□□□□ -1.17
DEPDC4-208ENST00000549341 METTL13Q8N6R0 699 aa7.75□□□□□ -1.17
DEPDC4-208ENST00000549341 PJA1Q8NG27 643 aa7.75□□□□□ -1.17
DEPDC4-208ENST00000549341 BCL7CQ8WUZ0 217 aaPredicted RBP7.75□□□□□ -1.17
DEPDC4-208ENST00000549341 ATRIPQ8WXE1 791 aa7.75□□□□□ -1.17
DEPDC4-208ENST00000549341 ZNF668Q96K58 619 aaPredicted RBP7.75□□□□□ -1.17
DEPDC4-208ENST00000549341 HSD17B14Q9BPX1 270 aa7.75□□□□□ -1.17
DEPDC4-208ENST00000549341 GBP3Q9H0R5 595 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms