RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 CDC27P30260 824 aa17.04■□□□□ 0.32
CLSTN3-216ENST00000545663 RFC5P40937 340 aa17.04■□□□□ 0.32
CLSTN3-216ENST00000545663 CLCNKBP51801 687 aa17.04■□□□□ 0.32
CLSTN3-216ENST00000545663 CACNB1Q02641 598 aaPredicted RBP17.04■□□□□ 0.32
CLSTN3-216ENST00000545663 TWF1Q12792 350 aa17.04■□□□□ 0.32
CLSTN3-216ENST00000545663 PCBP1Q15365 356 aaKnown RBP eCLIP17.04■□□□□ 0.32
CLSTN3-216ENST00000545663 IQCEQ6IPM2 695 aa17.04■□□□□ 0.32
CLSTN3-216ENST00000545663 SYNE3Q6ZMZ3 975 aa17.04■□□□□ 0.32
CLSTN3-216ENST00000545663 ANKS3Q6ZW76 656 aa17.04■□□□□ 0.32
CLSTN3-216ENST00000545663 RAB44Q7Z6P3 723 aaPredicted RBP17.04■□□□□ 0.32
CLSTN3-216ENST00000545663 LURAP1LQ8IV03 231 aa17.04■□□□□ 0.32
CLSTN3-216ENST00000545663 ARID3BQ8IVW6 561 aaPredicted RBP17.04■□□□□ 0.32
CLSTN3-216ENST00000545663 C3orf58Q8NDZ4 430 aa17.04■□□□□ 0.32
CLSTN3-216ENST00000545663 ASAP3Q8TDY4 903 aa17.04■□□□□ 0.32
CLSTN3-216ENST00000545663 E2F7Q96AV8 911 aa17.04■□□□□ 0.32
CLSTN3-216ENST00000545663 CCDC86Q9H6F5 360 aaKnown RBP17.04■□□□□ 0.32
CLSTN3-216ENST00000545663 NUP205Q92621 2012 aa17.03■□□□□ 0.32
CLSTN3-216ENST00000545663 CCDC194A0A1B0GVG4 234 aa17.03■□□□□ 0.32
CLSTN3-216ENST00000545663 A0A1W2PRU2 124 aa17.03■□□□□ 0.32
CLSTN3-216ENST00000545663 ESYT2A0FGR8 921 aa17.03■□□□□ 0.32
CLSTN3-216ENST00000545663 TBX3O15119 743 aa17.03■□□□□ 0.32
CLSTN3-216ENST00000545663 ATG13O75143 517 aa17.03■□□□□ 0.32
CLSTN3-216ENST00000545663 RNF40O75150 1001 aa17.03■□□□□ 0.32
CLSTN3-216ENST00000545663 TDP2O95551 362 aa17.03■□□□□ 0.32
CLSTN3-216ENST00000545663 EGFP01133 1207 aa17.03■□□□□ 0.32
CLSTN3-216ENST00000545663 PLA2G2AP14555 144 aa17.03■□□□□ 0.32
CLSTN3-216ENST00000545663 BCKDHBP21953 392 aa17.03■□□□□ 0.32
CLSTN3-216ENST00000545663 CHMLP26374 656 aa17.03■□□□□ 0.32
CLSTN3-216ENST00000545663 QARSP47897 775 aaKnown RBP17.03■□□□□ 0.32
CLSTN3-216ENST00000545663 EPHA5P54756 1037 aa17.03■□□□□ 0.32
CLSTN3-216ENST00000545663 NUCB1Q02818 461 aa17.03■□□□□ 0.32
CLSTN3-216ENST00000545663 CAPSQ13938 189 aa17.03■□□□□ 0.32
CLSTN3-216ENST00000545663 TMEM196Q5HYL7 178 aa17.03■□□□□ 0.32
CLSTN3-216ENST00000545663 PMS2CLQ68D20 193 aa17.03■□□□□ 0.32
CLSTN3-216ENST00000545663 CYP2U1Q7Z449 544 aa17.03■□□□□ 0.32
CLSTN3-216ENST00000545663 SMC5Q8IY18 1101 aa17.03■□□□□ 0.32
CLSTN3-216ENST00000545663 TCP11Q8WWU5 503 aa17.03■□□□□ 0.32
CLSTN3-216ENST00000545663 PIGKQ92643 395 aa17.03■□□□□ 0.32
CLSTN3-216ENST00000545663 CHFRQ96EP1 664 aa17.03■□□□□ 0.32
CLSTN3-216ENST00000545663 XPNPEP1Q9NQW7 623 aa17.03■□□□□ 0.32
CLSTN3-216ENST00000545663 ASAH2Q9NR71 780 aa17.03■□□□□ 0.32
CLSTN3-216ENST00000545663 ZMYM2Q9UBW7 1377 aa17.02■□□□□ 0.32
CLSTN3-216ENST00000545663 TTLL13PA6NNM8 815 aa17.02■□□□□ 0.32
CLSTN3-216ENST00000545663 H0Y626 953 aa17.02■□□□□ 0.32
CLSTN3-216ENST00000545663 TRIM16O95361 564 aa17.02■□□□□ 0.32
CLSTN3-216ENST00000545663 GSPT1P15170 499 aaKnown RBP17.02■□□□□ 0.32
CLSTN3-216ENST00000545663 SEMA3BQ13214 749 aa17.02■□□□□ 0.32
CLSTN3-216ENST00000545663 ARHGAP29Q52LW3 1261 aa17.02■□□□□ 0.32
CLSTN3-216ENST00000545663 IFNLR1Q8IU57 520 aaPredicted RBP17.02■□□□□ 0.32
CLSTN3-216ENST00000545663 ELMOD1Q8N336 334 aa17.02■□□□□ 0.32
CLSTN3-216ENST00000545663 GOLGA2P5Q9HBQ8 144 aa17.02■□□□□ 0.32
CLSTN3-216ENST00000545663 FSCN3Q9NQT6 498 aa17.02■□□□□ 0.32
CLSTN3-216ENST00000545663 USP20Q9Y2K6 914 aa17.02■□□□□ 0.32
CLSTN3-216ENST00000545663 KIF26AQ9ULI4 1882 aaPredicted RBP17.01■□□□□ 0.31
CLSTN3-216ENST00000545663 OTOL1A6NHN0 477 aaPredicted RBP17.01■□□□□ 0.31
CLSTN3-216ENST00000545663 RECQL4O94761 1208 aa17.01■□□□□ 0.31
CLSTN3-216ENST00000545663 USP11P51784 963 aa17.01■□□□□ 0.31
CLSTN3-216ENST00000545663 KARSQ15046 597 aaKnown RBP17.01■□□□□ 0.31
CLSTN3-216ENST00000545663 ITPRIPL2Q3MIP1 535 aa17.01■□□□□ 0.31
CLSTN3-216ENST00000545663 Q4G0T1 1027 aa17.01■□□□□ 0.31
CLSTN3-216ENST00000545663 GLRA4Q5JXX5 417 aa17.01■□□□□ 0.31
CLSTN3-216ENST00000545663 NAIF1Q69YI7 327 aaPredicted RBP17.01■□□□□ 0.31
CLSTN3-216ENST00000545663 EXOC8Q8IYI6 725 aa17.01■□□□□ 0.31
CLSTN3-216ENST00000545663 ETNPPLQ8TBG4 499 aa17.01■□□□□ 0.31
CLSTN3-216ENST00000545663 TCEANC2Q96MN5 208 aa17.01■□□□□ 0.31
CLSTN3-216ENST00000545663 LRRC3Q9BY71 257 aa17.01■□□□□ 0.31
CLSTN3-216ENST00000545663 GPR88Q9GZN0 384 aa17.01■□□□□ 0.31
CLSTN3-216ENST00000545663 MBD1Q9UIS9 605 aaPredicted RBP17.01■□□□□ 0.31
CLSTN3-216ENST00000545663 TMEM189-UBE2V1I3L0A0 370 aa17■□□□□ 0.31
CLSTN3-216ENST00000545663 SGSM2O43147 1006 aa17■□□□□ 0.31
CLSTN3-216ENST00000545663 ZBTB43O43298 467 aa17■□□□□ 0.31
CLSTN3-216ENST00000545663 ENGP17813 658 aa17■□□□□ 0.31
CLSTN3-216ENST00000545663 U2AF2P26368 475 aaKnown RBP eCLIP17■□□□□ 0.31
CLSTN3-216ENST00000545663 ADD1P35611 737 aaKnown RBP17■□□□□ 0.31
CLSTN3-216ENST00000545663 DHPSP49366 369 aaPredicted RBP17■□□□□ 0.31
CLSTN3-216ENST00000545663 DGKEP52429 567 aa17■□□□□ 0.31
CLSTN3-216ENST00000545663 GRSF1Q12849 480 aaKnown RBP eCLIP17■□□□□ 0.31
CLSTN3-216ENST00000545663 MXD4Q14582 209 aaPredicted RBP17■□□□□ 0.31
CLSTN3-216ENST00000545663 TRIM61Q5EBN2 209 aa17■□□□□ 0.31
CLSTN3-216ENST00000545663 XKR9Q5GH70 373 aa17■□□□□ 0.31
CLSTN3-216ENST00000545663 ERICH6BQ5W0A0 696 aa17■□□□□ 0.31
CLSTN3-216ENST00000545663 HAUS6Q7Z4H7 955 aa17■□□□□ 0.31
CLSTN3-216ENST00000545663 NOSTRINQ8IVI9 506 aa17■□□□□ 0.31
CLSTN3-216ENST00000545663 PNPLA1Q8N8W4 532 aa17■□□□□ 0.31
CLSTN3-216ENST00000545663 RUFY2Q8WXA3 655 aa17■□□□□ 0.31
CLSTN3-216ENST00000545663 MTRQ99707 1265 aa17■□□□□ 0.31
CLSTN3-216ENST00000545663 TPSD1Q9BZJ3 242 aa17■□□□□ 0.31
CLSTN3-216ENST00000545663 TMEM74BQ9NUR3 256 aa17■□□□□ 0.31
CLSTN3-216ENST00000545663 EBF1Q9UH73 591 aa17■□□□□ 0.31
CLSTN3-216ENST00000545663 FBXL5Q9UKA1 691 aa17■□□□□ 0.31
CLSTN3-216ENST00000545663 GOLGA8AA7E2F4 631 aa16.99■□□□□ 0.31
CLSTN3-216ENST00000545663 GOLGA8BA8MQT2 603 aa16.99■□□□□ 0.31
CLSTN3-216ENST00000545663 PRAMEF12O95522 483 aa16.99■□□□□ 0.31
CLSTN3-216ENST00000545663 APBB3O95704 486 aa16.99■□□□□ 0.31
CLSTN3-216ENST00000545663 YWHABP31946 246 aaKnown RBP16.99■□□□□ 0.31
CLSTN3-216ENST00000545663 RDXP35241 583 aaKnown RBP16.99■□□□□ 0.31
CLSTN3-216ENST00000545663 TFDP1Q14186 410 aa16.99■□□□□ 0.31
CLSTN3-216ENST00000545663 UPP1Q16831 310 aa16.99■□□□□ 0.31
CLSTN3-216ENST00000545663 TMC8Q8IU68 726 aa16.99■□□□□ 0.31
CLSTN3-216ENST00000545663 TBCKQ8TEA7 893 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms