RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 RNF168Q8IYW5 571 aaPredicted RBP5.6□□□□□ -1.51
USP28-213ENST00000544967 ZNF444Q8N0Y2 327 aaPredicted RBP5.6□□□□□ -1.51
USP28-213ENST00000544967 SERPINB12Q96P63 405 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 FMO2Q99518 471 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 C7orf25Q9BPX7 421 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 CENPKQ9BS16 269 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 VPS54Q9P1Q0 977 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 FRMD4AQ9P2Q2 1039 aaPredicted RBP5.6□□□□□ -1.51
USP28-213ENST00000544967 ZNF212Q9UDV6 495 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 NENFQ9UMX5 172 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 ZNF232Q9UNY5 417 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 CNTNAP5Q8WYK1 1306 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 ESYT2A0FGR8 921 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 B4E1Z4 1266 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 TBX3O15119 743 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 GGPS1O95749 300 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 FOSL1P15407 271 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 ZFXP17010 805 aaPredicted RBP5.6□□□□□ -1.51
USP28-213ENST00000544967 TSPAN7P41732 249 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 STAT6P42226 847 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 XIAPP98170 497 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 SPP2Q13103 211 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 MTFR1Q15390 333 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 ZNF568Q3ZCX4 644 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 TMEM67Q5HYA8 995 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 FAM91A1Q658Y4 838 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 DENND2CQ68D51 928 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 DUPD1Q68J44 220 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 KLC3Q6P597 504 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 MAMDC4Q6UXC1 1216 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 USP49Q70CQ1 688 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 TAS1R3Q7RTX0 852 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 CSGALNACT2Q8N6G5 542 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 UBLCP1Q8WVY7 318 aaPredicted RBP5.6□□□□□ -1.51
USP28-213ENST00000544967 CRYGNQ8WXF5 182 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 EPSTI1Q96J88 318 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 MAGEB18Q96M61 343 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 NELL2Q99435 816 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 NOC4LQ9BVI4 516 aaKnown RBP5.6□□□□□ -1.51
USP28-213ENST00000544967 EPB41L4BQ9H329 900 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 MKNK2Q9HBH9 465 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 ZFYVE28Q9HCC9 887 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 SH3GLB2Q9NR46 395 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 DISC1Q9NRI5 854 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 ZDHHC18Q9NUE0 388 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 HOXC10Q9NYD6 342 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 KLHL14Q9P2G3 628 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 STARD13Q9Y3M8 1113 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 PABPN1LA6NDY0 278 aaKnown RBP5.6□□□□□ -1.51
USP28-213ENST00000544967 RGS16O15492 202 aaPredicted RBP5.6□□□□□ -1.51
USP28-213ENST00000544967 SLC26A4O43511 780 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 CSDE1O75534 798 aaKnown RBP5.6□□□□□ -1.51
USP28-213ENST00000544967 PALMO75781 387 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 SLC25A27O95847 323 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 ICAM1P05362 532 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 PABPC4LP0CB38 370 aaKnown RBP5.6□□□□□ -1.51
USP28-213ENST00000544967 EDNRBP24530 442 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 DNAJA1P31689 397 aaKnown RBP5.6□□□□□ -1.51
USP28-213ENST00000544967 HSD17B4P51659 736 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 RAD23BP54727 409 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 PTENP60484 403 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 CYP27A1Q02318 531 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 MAP7Q14244 749 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 COG2Q14746 738 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 LRRC41Q15345 812 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 TRMT10CQ7L0Y3 403 aaKnown RBP5.6□□□□□ -1.51
USP28-213ENST00000544967 LRRC57Q8N9N7 239 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 PXYLP1Q8TE99 480 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 PHKBQ93100 1093 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 ARMC5Q96C12 935 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 ZNF653Q96CK0 615 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 ELAC2Q9BQ52 826 aaKnown RBP5.6□□□□□ -1.51
USP28-213ENST00000544967 SPATA16Q9BXB7 569 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 DDX47Q9H0S4 455 aaKnown RBP5.6□□□□□ -1.51
USP28-213ENST00000544967 MROH8Q9H579 483 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 RPAP3Q9H6T3 665 aaPredicted RBP5.6□□□□□ -1.51
USP28-213ENST00000544967 TMOD4Q9NZQ9 345 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 POLG2Q9UHN1 485 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 RASAL2Q9UJF2 1139 aa5.6□□□□□ -1.51
USP28-213ENST00000544967 A8MXQ7 604 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 MINDY4BA8MYZ0 360 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 M0R2N6 131 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 AP1G1O43747 822 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 NMT2O60551 498 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 E2F6O75461 281 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 GNA14O95837 355 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 BPNT1O95861 308 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 MATR3P43243 847 aaKnown RBP eCLIP5.59□□□□□ -1.51
USP28-213ENST00000544967 PMS2P54278 862 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 HMGCS2P54868 508 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 AP1B1Q10567 949 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 Q3C1V9 767 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 GALNT17Q6IS24 598 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 TMTC3Q6ZXV5 915 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 ADGRG6Q86SQ4 1221 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 SPICE1Q8N0Z3 855 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 RIBC1Q8N443 379 aaPredicted RBP5.59□□□□□ -1.51
USP28-213ENST00000544967 DAGLBQ8NCG7 672 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 CHST13Q8NET6 341 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 CLEC4DQ8WXI8 215 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms