RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 CEP120Q8N960 986 aa14.1□□□□□ -0.15
USP28-212ENST00000544750 ZMAT2Q96NC0 199 aaKnown RBP14.1□□□□□ -0.15
USP28-212ENST00000544750 POLR3CQ9BUI4 534 aaPredicted RBP14.1□□□□□ -0.15
USP28-212ENST00000544750 TMEM60Q9H2L4 133 aa14.1□□□□□ -0.15
USP28-212ENST00000544750 CYP4F11Q9HBI6 524 aa14.1□□□□□ -0.15
USP28-212ENST00000544750 CEP72Q9P209 647 aa14.1□□□□□ -0.15
USP28-212ENST00000544750 FBXL5Q9UKA1 691 aa14.1□□□□□ -0.15
USP28-212ENST00000544750 FRYQ5TBA9 3013 aa14.1□□□□□ -0.15
USP28-212ENST00000544750 CHURC1-FNTBB4DL54 471 aa14.09□□□□□ -0.15
USP28-212ENST00000544750 PRRG1O14668 218 aa14.09□□□□□ -0.15
USP28-212ENST00000544750 TM4SF5O14894 197 aa14.09□□□□□ -0.15
USP28-212ENST00000544750 CCNE1P24864 410 aa14.09□□□□□ -0.15
USP28-212ENST00000544750 CNR2P34972 360 aa14.09□□□□□ -0.15
USP28-212ENST00000544750 VIPR2P41587 438 aa14.09□□□□□ -0.15
USP28-212ENST00000544750 FNTBP49356 437 aa14.09□□□□□ -0.15
USP28-212ENST00000544750 SRSF5Q13243 272 aaKnown RBP14.09□□□□□ -0.15
USP28-212ENST00000544750 C8orf34Q49A92 452 aa14.09□□□□□ -0.15
USP28-212ENST00000544750 ATF7IP2Q5U623 682 aa14.09□□□□□ -0.15
USP28-212ENST00000544750 PADI6Q6TGC4 694 aa14.09□□□□□ -0.15
USP28-212ENST00000544750 PDZD4Q76G19 769 aaPredicted RBP14.09□□□□□ -0.15
USP28-212ENST00000544750 RSPRY1Q96DX4 576 aa14.09□□□□□ -0.15
USP28-212ENST00000544750 NACC1Q96RE7 527 aa14.09□□□□□ -0.15
USP28-212ENST00000544750 KIFC3Q9BVG8 833 aa14.09□□□□□ -0.15
USP28-212ENST00000544750 PTPRHQ9HD43 1115 aa14.09□□□□□ -0.15
USP28-212ENST00000544750 PDRG1Q9NUG6 133 aa14.09□□□□□ -0.15
USP28-212ENST00000544750 C2orf42Q9NWW7 574 aa14.09□□□□□ -0.15
USP28-212ENST00000544750 ORC3Q9UBD5 711 aaPredicted RBP14.09□□□□□ -0.15
USP28-212ENST00000544750 TPCN1Q9ULQ1 816 aa14.09□□□□□ -0.15
USP28-212ENST00000544750 TNFSF13BQ9Y275 285 aa14.09□□□□□ -0.15
USP28-212ENST00000544750 LAMA1P25391 3075 aa14.09□□□□□ -0.15
USP28-212ENST00000544750 FAM208BQ5VWN6 2430 aa14.08□□□□□ -0.16
USP28-212ENST00000544750 BTBD18B2RXH4 712 aa14.08□□□□□ -0.16
USP28-212ENST00000544750 PODXLO00592 558 aa14.08□□□□□ -0.16
USP28-212ENST00000544750 MEFVO15553 781 aaPredicted RBP14.08□□□□□ -0.16
USP28-212ENST00000544750 PMLP29590 882 aa14.08□□□□□ -0.16
USP28-212ENST00000544750 GRM5P41594 1212 aa14.08□□□□□ -0.16
USP28-212ENST00000544750 LIMK1P53667 647 aa14.08□□□□□ -0.16
USP28-212ENST00000544750 PPP2R5AQ15172 486 aa14.08□□□□□ -0.16
USP28-212ENST00000544750 TMEM132AQ24JP5 1023 aa14.08□□□□□ -0.16
USP28-212ENST00000544750 CYP4A22Q5TCH4 519 aa14.08□□□□□ -0.16
USP28-212ENST00000544750 LONP2Q86WA8 852 aa14.08□□□□□ -0.16
USP28-212ENST00000544750 DEPTORQ8TB45 409 aa14.08□□□□□ -0.16
USP28-212ENST00000544750 LRRC3Q9BY71 257 aa14.08□□□□□ -0.16
USP28-212ENST00000544750 RBM12Q9NTZ6 932 aaKnown RBP14.08□□□□□ -0.16
USP28-212ENST00000544750 MAFFQ9ULX9 164 aa14.08□□□□□ -0.16
USP28-212ENST00000544750 ZNF638Q14966 1978 aaKnown RBP14.07□□□□□ -0.16
USP28-212ENST00000544750 HEPACAM2A8MVW5 462 aa14.07□□□□□ -0.16
USP28-212ENST00000544750 H7C4K7 107 aa14.07□□□□□ -0.16
USP28-212ENST00000544750 ABLIM1O14639 778 aa14.07□□□□□ -0.16
USP28-212ENST00000544750 ZNF263O14978 683 aa14.07□□□□□ -0.16
USP28-212ENST00000544750 FOXD2O60548 495 aaPredicted RBP14.07□□□□□ -0.16
USP28-212ENST00000544750 VNN2O95498 520 aa14.07□□□□□ -0.16
USP28-212ENST00000544750 KCNE1P15382 129 aa14.07□□□□□ -0.16
USP28-212ENST00000544750 GJA1P17302 382 aa14.07□□□□□ -0.16
USP28-212ENST00000544750 LIG1P18858 919 aa14.07□□□□□ -0.16
USP28-212ENST00000544750 RPA1P27694 616 aa14.07□□□□□ -0.16
USP28-212ENST00000544750 HOXA6P31267 233 aa14.07□□□□□ -0.16
USP28-212ENST00000544750 HOXC13P31276 330 aa14.07□□□□□ -0.16
USP28-212ENST00000544750 EFNA5P52803 228 aa14.07□□□□□ -0.16
USP28-212ENST00000544750 ARPP19P56211 112 aa14.07□□□□□ -0.16
USP28-212ENST00000544750 FCHO2Q0JRZ9 810 aa14.07□□□□□ -0.16
USP28-212ENST00000544750 TEAD2Q15562 447 aa14.07□□□□□ -0.16
USP28-212ENST00000544750 TXNDC11Q6PKC3 985 aa14.07□□□□□ -0.16
USP28-212ENST00000544750 FAM160A2Q8N612 972 aaPredicted RBP14.07□□□□□ -0.16
USP28-212ENST00000544750 LEMD2Q8NC56 503 aa14.07□□□□□ -0.16
USP28-212ENST00000544750 BEST2Q8NFU1 509 aa14.07□□□□□ -0.16
USP28-212ENST00000544750 SHKBP1Q8TBC3 707 aa14.07□□□□□ -0.16
USP28-212ENST00000544750 ZSCAN18Q8TBC5 510 aaPredicted RBP14.07□□□□□ -0.16
USP28-212ENST00000544750 WASF1Q92558 559 aa14.07□□□□□ -0.16
USP28-212ENST00000544750 MSANTD3Q96H12 275 aa14.07□□□□□ -0.16
USP28-212ENST00000544750 SUSD3Q96L08 255 aa14.07□□□□□ -0.16
USP28-212ENST00000544750 ZNF512Q96ME7 567 aaPredicted RBP14.07□□□□□ -0.16
USP28-212ENST00000544750 CDT1Q9H211 546 aa14.07□□□□□ -0.16
USP28-212ENST00000544750 POLD4Q9HCU8 107 aa14.07□□□□□ -0.16
USP28-212ENST00000544750 AFF4Q9UHB7 1163 aaKnown RBP14.07□□□□□ -0.16
USP28-212ENST00000544750 BAHCC1Q9P281 2608 aa14.07□□□□□ -0.16
USP28-212ENST00000544750 OBSL1O75147 1896 aa14.06□□□□□ -0.16
USP28-212ENST00000544750 MYO16Q9Y6X6 1858 aa14.06□□□□□ -0.16
USP28-212ENST00000544750 CEP295Q9C0D2 2601 aa14.06□□□□□ -0.16
USP28-212ENST00000544750 MYBPHLA2RUH7 354 aa14.06□□□□□ -0.16
USP28-212ENST00000544750 CHADO15335 359 aa14.06□□□□□ -0.16
USP28-212ENST00000544750 ANAPC15P60006 121 aa14.06□□□□□ -0.16
USP28-212ENST00000544750 SHC2P98077 582 aa14.06□□□□□ -0.16
USP28-212ENST00000544750 TWF1Q12792 350 aa14.06□□□□□ -0.16
USP28-212ENST00000544750 IQCEQ6IPM2 695 aa14.06□□□□□ -0.16
USP28-212ENST00000544750 C1orf228Q6PIY5 440 aa14.06□□□□□ -0.16
USP28-212ENST00000544750 Q6ZS52 159 aa14.06□□□□□ -0.16
USP28-212ENST00000544750 TAS1R3Q7RTX0 852 aa14.06□□□□□ -0.16
USP28-212ENST00000544750 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14.06□□□□□ -0.16
USP28-212ENST00000544750 TMC8Q8IU68 726 aa14.06□□□□□ -0.16
USP28-212ENST00000544750 DDX1Q92499 740 aaKnown RBP14.06□□□□□ -0.16
USP28-212ENST00000544750 E2F7Q96AV8 911 aa14.06□□□□□ -0.16
USP28-212ENST00000544750 CHAMP1Q96JM3 812 aa14.06□□□□□ -0.16
USP28-212ENST00000544750 ACO2Q99798 780 aaKnown RBP14.06□□□□□ -0.16
USP28-212ENST00000544750 MKNK1Q9BUB5 465 aa14.06□□□□□ -0.16
USP28-212ENST00000544750 GPR88Q9GZN0 384 aa14.06□□□□□ -0.16
USP28-212ENST00000544750 C8orf33Q9H7E9 229 aaPredicted RBP14.06□□□□□ -0.16
USP28-212ENST00000544750 BRMS1Q9HCU9 246 aa14.06□□□□□ -0.16
USP28-212ENST00000544750 SLC38A7Q9NVC3 462 aa14.06□□□□□ -0.16
USP28-212ENST00000544750 CNTN3Q9P232 1028 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms