RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 TBX20Q9UMR3 447 aa14.29□□□□□ -0.12
RTN3-213ENST00000543552 PCDHB8Q9UN66 801 aa14.29□□□□□ -0.12
RTN3-213ENST00000543552 CFAP54Q96N23 3096 aa14.28□□□□□ -0.12
RTN3-213ENST00000543552 TTC26A0AVF1 554 aa14.28□□□□□ -0.12
RTN3-213ENST00000543552 WDR27A2RRH5 827 aa14.28□□□□□ -0.12
RTN3-213ENST00000543552 ZNF197O14709 1029 aa14.28□□□□□ -0.12
RTN3-213ENST00000543552 OGTO15294 1046 aa14.28□□□□□ -0.12
RTN3-213ENST00000543552 TRAK2O60296 914 aa14.28□□□□□ -0.12
RTN3-213ENST00000543552 TBC1D4O60343 1298 aa14.28□□□□□ -0.12
RTN3-213ENST00000543552 RHOP08100 348 aa14.28□□□□□ -0.12
RTN3-213ENST00000543552 CPB1P15086 417 aa14.28□□□□□ -0.12
RTN3-213ENST00000543552 IGFBP6P24592 240 aaPredicted RBP14.28□□□□□ -0.12
RTN3-213ENST00000543552 LRPAP1P30533 357 aa14.28□□□□□ -0.12
RTN3-213ENST00000543552 YWHAHQ04917 246 aaPredicted RBP14.28□□□□□ -0.12
RTN3-213ENST00000543552 MRPL58Q14197 206 aaKnown RBP14.28□□□□□ -0.12
RTN3-213ENST00000543552 PDCD11Q14690 1871 aaKnown RBP14.28□□□□□ -0.12
RTN3-213ENST00000543552 KARSQ15046 597 aaKnown RBP14.28□□□□□ -0.12
RTN3-213ENST00000543552 ANGPT1Q15389 498 aa14.28□□□□□ -0.12
RTN3-213ENST00000543552 SEZ6Q53EL9 994 aa14.28□□□□□ -0.12
RTN3-213ENST00000543552 IQCEQ6IPM2 695 aa14.28□□□□□ -0.12
RTN3-213ENST00000543552 USP37Q86T82 979 aa14.28□□□□□ -0.12
RTN3-213ENST00000543552 CD302Q8IX05 232 aa14.28□□□□□ -0.12
RTN3-213ENST00000543552 KRI1Q8N9T8 703 aaKnown RBP14.28□□□□□ -0.12
RTN3-213ENST00000543552 LEMD2Q8NC56 503 aa14.28□□□□□ -0.12
RTN3-213ENST00000543552 ITFG1Q8TB96 612 aa14.28□□□□□ -0.12
RTN3-213ENST00000543552 DDX12PQ92771 950 aa14.28□□□□□ -0.12
RTN3-213ENST00000543552 MSTO1Q9BUK6 570 aa14.28□□□□□ -0.12
RTN3-213ENST00000543552 RPF1Q9H9Y2 349 aaKnown RBP14.28□□□□□ -0.12
RTN3-213ENST00000543552 HCFC1R1Q9NWW0 138 aa14.28□□□□□ -0.12
RTN3-213ENST00000543552 DNMT3BQ9UBC3 853 aaKnown RBP14.28□□□□□ -0.12
RTN3-213ENST00000543552 CCDC39Q9UFE4 941 aa14.28□□□□□ -0.12
RTN3-213ENST00000543552 AFF4Q9UHB7 1163 aaKnown RBP14.28□□□□□ -0.12
RTN3-213ENST00000543552 SIT1Q9Y3P8 196 aa14.28□□□□□ -0.12
RTN3-213ENST00000543552 INSL5Q9Y5Q6 135 aa14.28□□□□□ -0.12
RTN3-213ENST00000543552 PI15O43692 258 aa14.27□□□□□ -0.13
RTN3-213ENST00000543552 ECI2O75521 394 aa14.27□□□□□ -0.13
RTN3-213ENST00000543552 MICAL2O94851 1124 aa14.27□□□□□ -0.13
RTN3-213ENST00000543552 PRKCQQ04759 706 aa14.27□□□□□ -0.13
RTN3-213ENST00000543552 PLD1Q13393 1074 aa14.27□□□□□ -0.13
RTN3-213ENST00000543552 CUL4AQ13619 759 aa14.27□□□□□ -0.13
RTN3-213ENST00000543552 MCM6Q14566 821 aa14.27□□□□□ -0.13
RTN3-213ENST00000543552 CYP4A22Q5TCH4 519 aa14.27□□□□□ -0.13
RTN3-213ENST00000543552 PDZD4Q76G19 769 aaPredicted RBP14.27□□□□□ -0.13
RTN3-213ENST00000543552 MAP4K3Q8IVH8 894 aa14.27□□□□□ -0.13
RTN3-213ENST00000543552 BEST2Q8NFU1 509 aa14.27□□□□□ -0.13
RTN3-213ENST00000543552 NKD2Q969F2 451 aaPredicted RBP14.27□□□□□ -0.13
RTN3-213ENST00000543552 CCSER1Q9C0I3 900 aa14.27□□□□□ -0.13
RTN3-213ENST00000543552 BLOC1S4Q9NUP1 217 aa14.27□□□□□ -0.13
RTN3-213ENST00000543552 STK17AQ9UEE5 414 aa14.27□□□□□ -0.13
RTN3-213ENST00000543552 A0A0B4J269 797 aa14.26□□□□□ -0.13
RTN3-213ENST00000543552 M0QZQ0 153 aa14.26□□□□□ -0.13
RTN3-213ENST00000543552 MEFVO15553 781 aaPredicted RBP14.26□□□□□ -0.13
RTN3-213ENST00000543552 DDIT3P35638 169 aa14.26□□□□□ -0.13
RTN3-213ENST00000543552 STARD6P59095 220 aa14.26□□□□□ -0.13
RTN3-213ENST00000543552 GPC5P78333 572 aa14.26□□□□□ -0.13
RTN3-213ENST00000543552 ENOX2Q16206 610 aaKnown RBP14.26□□□□□ -0.13
RTN3-213ENST00000543552 SLFN12LQ6IEE8 588 aa14.26□□□□□ -0.13
RTN3-213ENST00000543552 DSTYKQ6XUX3 929 aa14.26□□□□□ -0.13
RTN3-213ENST00000543552 PJA1Q8NG27 643 aa14.26□□□□□ -0.13
RTN3-213ENST00000543552 ING5Q8WYH8 240 aa14.26□□□□□ -0.13
RTN3-213ENST00000543552 HVCN1Q96D96 273 aa14.26□□□□□ -0.13
RTN3-213ENST00000543552 ZNF512Q96ME7 567 aaPredicted RBP14.26□□□□□ -0.13
RTN3-213ENST00000543552 KXD1Q9BQD3 176 aa14.26□□□□□ -0.13
RTN3-213ENST00000543552 CORO1BQ9BR76 489 aa14.26□□□□□ -0.13
RTN3-213ENST00000543552 SEL1LQ9UBV2 794 aa14.26□□□□□ -0.13
RTN3-213ENST00000543552 DERAQ9Y315 318 aa14.26□□□□□ -0.13
RTN3-213ENST00000543552 MYH15Q9Y2K3 1946 aa14.25□□□□□ -0.13
RTN3-213ENST00000543552 PRR23AA6NEV1 266 aa14.25□□□□□ -0.13
RTN3-213ENST00000543552 OR6C75A6NL08 312 aa14.25□□□□□ -0.13
RTN3-213ENST00000543552 LACTBL1A8MY62 500 aa14.25□□□□□ -0.13
RTN3-213ENST00000543552 FAM189A1O60320 539 aa14.25□□□□□ -0.13
RTN3-213ENST00000543552 OAZ2O95190 189 aa14.25□□□□□ -0.13
RTN3-213ENST00000543552 ODC1P11926 461 aa14.25□□□□□ -0.13
RTN3-213ENST00000543552 TNFSF9P41273 254 aa14.25□□□□□ -0.13
RTN3-213ENST00000543552 MAGEA9P43362 315 aa14.25□□□□□ -0.13
RTN3-213ENST00000543552 AARSP49588 968 aaKnown RBP eCLIP14.25□□□□□ -0.13
RTN3-213ENST00000543552 GTF2BQ00403 316 aa14.25□□□□□ -0.13
RTN3-213ENST00000543552 SPAG1Q07617 926 aa14.25□□□□□ -0.13
RTN3-213ENST00000543552 ADCY1Q08828 1119 aa14.25□□□□□ -0.13
RTN3-213ENST00000543552 MLF2Q15773 248 aaPredicted RBP14.25□□□□□ -0.13
RTN3-213ENST00000543552 ZBTB6Q15916 424 aa14.25□□□□□ -0.13
RTN3-213ENST00000543552 ZC3H14Q6PJT7 736 aaKnown RBP14.25□□□□□ -0.13
RTN3-213ENST00000543552 FRMD5Q7Z6J6 570 aa14.25□□□□□ -0.13
RTN3-213ENST00000543552 ELSPBP1Q96BH3 223 aa14.25□□□□□ -0.13
RTN3-213ENST00000543552 FAM212AQ96EL1 285 aa14.25□□□□□ -0.13
RTN3-213ENST00000543552 HAPLN2Q9GZV7 340 aa14.25□□□□□ -0.13
RTN3-213ENST00000543552 SEMA4AQ9H3S1 761 aa14.25□□□□□ -0.13
RTN3-213ENST00000543552 ST6GALNAC4Q9H4F1 302 aa14.25□□□□□ -0.13
RTN3-213ENST00000543552 ASAH2Q9NR71 780 aa14.25□□□□□ -0.13
RTN3-213ENST00000543552 DOCK6Q96HP0 2047 aa14.24□□□□□ -0.13
RTN3-213ENST00000543552 KANSL1LA0AUZ9 987 aa14.24□□□□□ -0.13
RTN3-213ENST00000543552 ADRB2P07550 413 aa14.24□□□□□ -0.13
RTN3-213ENST00000543552 CEBPBP17676 345 aa14.24□□□□□ -0.13
RTN3-213ENST00000543552 GAP43P17677 238 aa14.24□□□□□ -0.13
RTN3-213ENST00000543552 TYMPP19971 482 aa14.24□□□□□ -0.13
RTN3-213ENST00000543552 POU5F1Q01860 360 aaKnown RBP14.24□□□□□ -0.13
RTN3-213ENST00000543552 GRIN1Q05586 938 aa14.24□□□□□ -0.13
RTN3-213ENST00000543552 TWF1Q12792 350 aa14.24□□□□□ -0.13
RTN3-213ENST00000543552 TMEM132DQ14C87 1099 aa14.24□□□□□ -0.13
RTN3-213ENST00000543552 SLC5A9Q2M3M2 681 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms