RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 MTAPQ13126 283 aa16.92■□□□□ 0.3
CLSTN3-213ENST00000541953 DMP1Q13316 513 aaPredicted RBP16.92■□□□□ 0.3
CLSTN3-213ENST00000541953 ZNF528Q3MIS6 628 aa16.92■□□□□ 0.3
CLSTN3-213ENST00000541953 ZBTB41Q5SVQ8 909 aa16.92■□□□□ 0.3
CLSTN3-213ENST00000541953 DGLUCYQ7Z3D6 616 aa16.92■□□□□ 0.3
CLSTN3-213ENST00000541953 LRRC15Q8TF66 581 aa16.92■□□□□ 0.3
CLSTN3-213ENST00000541953 SUSD3Q96L08 255 aa16.92■□□□□ 0.3
CLSTN3-213ENST00000541953 TBC1D32Q96NH3 1257 aa16.92■□□□□ 0.3
CLSTN3-213ENST00000541953 ASB16Q96NS5 453 aa16.92■□□□□ 0.3
CLSTN3-213ENST00000541953 ACAP3Q96P50 834 aa16.92■□□□□ 0.3
CLSTN3-213ENST00000541953 PNMA5Q96PV4 448 aa16.92■□□□□ 0.3
CLSTN3-213ENST00000541953 LLPHQ9BRT6 129 aaKnown RBP16.92■□□□□ 0.3
CLSTN3-213ENST00000541953 PRMT8Q9NR22 394 aaPredicted RBP16.92■□□□□ 0.3
CLSTN3-213ENST00000541953 TOPORSQ9NS56 1045 aaPredicted RBP16.92■□□□□ 0.3
CLSTN3-213ENST00000541953 ANKFY1Q9P2R3 1169 aa16.92■□□□□ 0.3
CLSTN3-213ENST00000541953 NDRG2Q9UN36 371 aaKnown RBP16.92■□□□□ 0.3
CLSTN3-213ENST00000541953 TIMM13Q9Y5L4 95 aaPredicted RBP16.92■□□□□ 0.3
CLSTN3-213ENST00000541953 ZFHX4Q86UP3 3567 aa16.91■□□□□ 0.3
CLSTN3-213ENST00000541953 NPHP3-ACAD11A0A0J9YXS1 232 aa16.91■□□□□ 0.3
CLSTN3-213ENST00000541953 SYN3O14994 580 aa16.91■□□□□ 0.3
CLSTN3-213ENST00000541953 LILRB5O75023 590 aa16.91■□□□□ 0.3
CLSTN3-213ENST00000541953 CXCL8P10145 99 aa16.91■□□□□ 0.3
CLSTN3-213ENST00000541953 HOXC13P31276 330 aa16.91■□□□□ 0.3
CLSTN3-213ENST00000541953 CACNB1Q02641 598 aaPredicted RBP16.91■□□□□ 0.3
CLSTN3-213ENST00000541953 ADCY1Q08828 1119 aa16.91■□□□□ 0.3
CLSTN3-213ENST00000541953 TWF1Q12792 350 aa16.91■□□□□ 0.3
CLSTN3-213ENST00000541953 PDIA5Q14554 519 aa16.91■□□□□ 0.3
CLSTN3-213ENST00000541953 RSPO4Q2I0M5 234 aaPredicted RBP16.91■□□□□ 0.3
CLSTN3-213ENST00000541953 CTXN3Q4LDR2 81 aa16.91■□□□□ 0.3
CLSTN3-213ENST00000541953 WDR44Q5JSH3 913 aa16.91■□□□□ 0.3
CLSTN3-213ENST00000541953 RNF19BQ6ZMZ0 732 aa16.91■□□□□ 0.3
CLSTN3-213ENST00000541953 RTL10Q7L3V2 364 aa16.91■□□□□ 0.3
CLSTN3-213ENST00000541953 TMEM161BQ8NDZ6 487 aa16.91■□□□□ 0.3
CLSTN3-213ENST00000541953 DDX12PQ92771 950 aa16.91■□□□□ 0.3
CLSTN3-213ENST00000541953 PLIN2Q99541 437 aa16.91■□□□□ 0.3
CLSTN3-213ENST00000541953 SLC38A7Q9NVC3 462 aa16.91■□□□□ 0.3
CLSTN3-213ENST00000541953 NUB1Q9Y5A7 615 aa16.91■□□□□ 0.3
CLSTN3-213ENST00000541953 PPEF2O14830 753 aa16.9■□□□□ 0.3
CLSTN3-213ENST00000541953 ELF1P32519 619 aa16.9■□□□□ 0.3
CLSTN3-213ENST00000541953 MCM4P33991 863 aa16.9■□□□□ 0.3
CLSTN3-213ENST00000541953 TNFSF9P41273 254 aa16.9■□□□□ 0.3
CLSTN3-213ENST00000541953 GNL2Q13823 731 aaKnown RBP16.9■□□□□ 0.3
CLSTN3-213ENST00000541953 NOLC1Q14978 699 aaKnown RBP eCLIP16.9■□□□□ 0.3
CLSTN3-213ENST00000541953 TEAD2Q15562 447 aa16.9■□□□□ 0.3
CLSTN3-213ENST00000541953 ZRSR1Q15695 479 aaKnown RBP16.9■□□□□ 0.3
CLSTN3-213ENST00000541953 STXBP5Q5T5C0 1151 aa16.9■□□□□ 0.3
CLSTN3-213ENST00000541953 GPIHBP1Q8IV16 184 aa16.9■□□□□ 0.3
CLSTN3-213ENST00000541953 MAP4K3Q8IVH8 894 aa16.9■□□□□ 0.3
CLSTN3-213ENST00000541953 SHKBP1Q8TBC3 707 aa16.9■□□□□ 0.3
CLSTN3-213ENST00000541953 TCHPQ9BT92 498 aa16.9■□□□□ 0.3
CLSTN3-213ENST00000541953 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.9■□□□□ 0.3
CLSTN3-213ENST00000541953 NOL7Q9UMY1 257 aaKnown RBP16.9■□□□□ 0.3
CLSTN3-213ENST00000541953 SMG5Q9UPR3 1016 aaKnown RBP16.9■□□□□ 0.3
CLSTN3-213ENST00000541953 DNM3Q9UQ16 869 aa16.9■□□□□ 0.3
CLSTN3-213ENST00000541953 PCDHGA2Q9Y5H1 932 aa16.9■□□□□ 0.3
CLSTN3-213ENST00000541953 ARNTLO00327 626 aa16.89■□□□□ 0.29
CLSTN3-213ENST00000541953 SPTLC1O15269 473 aa16.89■□□□□ 0.29
CLSTN3-213ENST00000541953 MAPTP10636 758 aaKnown RBP16.89■□□□□ 0.29
CLSTN3-213ENST00000541953 MYL4P12829 197 aa16.89■□□□□ 0.29
CLSTN3-213ENST00000541953 TGM1P22735 817 aa16.89■□□□□ 0.29
CLSTN3-213ENST00000541953 GDI1P31150 447 aa16.89■□□□□ 0.29
CLSTN3-213ENST00000541953 RPS9P46781 194 aaKnown RBP16.89■□□□□ 0.29
CLSTN3-213ENST00000541953 CDR1P51861 262 aa16.89■□□□□ 0.29
CLSTN3-213ENST00000541953 GAS6Q14393 721 aa16.89■□□□□ 0.29
CLSTN3-213ENST00000541953 ZNF280DQ6N043 979 aa16.89■□□□□ 0.29
CLSTN3-213ENST00000541953 ZNF852Q6ZMS4 543 aa16.89■□□□□ 0.29
CLSTN3-213ENST00000541953 PDZD4Q76G19 769 aaPredicted RBP16.89■□□□□ 0.29
CLSTN3-213ENST00000541953 TMC8Q8IU68 726 aa16.89■□□□□ 0.29
CLSTN3-213ENST00000541953 TTC9BQ8N6N2 239 aa16.89■□□□□ 0.29
CLSTN3-213ENST00000541953 DNASE1L2Q92874 299 aa16.89■□□□□ 0.29
CLSTN3-213ENST00000541953 DRC1Q96MC2 740 aa16.89■□□□□ 0.29
CLSTN3-213ENST00000541953 PGLYRP2Q96PD5 576 aa16.89■□□□□ 0.29
CLSTN3-213ENST00000541953 LRRC3Q9BY71 257 aa16.89■□□□□ 0.29
CLSTN3-213ENST00000541953 DNAJC25Q9H1X3 360 aa16.89■□□□□ 0.29
CLSTN3-213ENST00000541953 EPC1Q9H2F5 836 aa16.89■□□□□ 0.29
CLSTN3-213ENST00000541953 BRD9Q9H8M2 597 aa16.89■□□□□ 0.29
CLSTN3-213ENST00000541953 ZFP14Q9HCL3 533 aa16.89■□□□□ 0.29
CLSTN3-213ENST00000541953 ZNF334Q9HCZ1 680 aaPredicted RBP16.89■□□□□ 0.29
CLSTN3-213ENST00000541953 PARD6AQ9NPB6 346 aa16.89■□□□□ 0.29
CLSTN3-213ENST00000541953 ZSCAN32Q9NX65 697 aa16.89■□□□□ 0.29
CLSTN3-213ENST00000541953 AFF4Q9UHB7 1163 aaKnown RBP16.89■□□□□ 0.29
CLSTN3-213ENST00000541953 YIPF1Q9Y548 306 aa16.89■□□□□ 0.29
CLSTN3-213ENST00000541953 TOM1L1O75674 476 aa16.88■□□□□ 0.29
CLSTN3-213ENST00000541953 CPB1P15086 417 aa16.88■□□□□ 0.29
CLSTN3-213ENST00000541953 GUCY2CP25092 1073 aa16.88■□□□□ 0.29
CLSTN3-213ENST00000541953 RPL9P32969 192 aaKnown RBP16.88■□□□□ 0.29
CLSTN3-213ENST00000541953 EPHA5P54756 1037 aa16.88■□□□□ 0.29
CLSTN3-213ENST00000541953 HMGN5P82970 282 aaKnown RBP16.88■□□□□ 0.29
CLSTN3-213ENST00000541953 PUM1Q14671 1186 aaKnown RBP eCLIP16.88■□□□□ 0.29
CLSTN3-213ENST00000541953 LPAL2Q16609 132 aa16.88■□□□□ 0.29
CLSTN3-213ENST00000541953 KRT79Q5XKE5 535 aa16.88■□□□□ 0.29
CLSTN3-213ENST00000541953 TPGS2Q68CL5 300 aa16.88■□□□□ 0.29
CLSTN3-213ENST00000541953 APBB1IPQ7Z5R6 666 aaPredicted RBP16.88■□□□□ 0.29
CLSTN3-213ENST00000541953 FAM184AQ8NB25 1140 aa16.88■□□□□ 0.29
CLSTN3-213ENST00000541953 BEST2Q8NFU1 509 aa16.88■□□□□ 0.29
CLSTN3-213ENST00000541953 SMARCD2Q92925 531 aa16.88■□□□□ 0.29
CLSTN3-213ENST00000541953 TMEM209Q96SK2 561 aa16.88■□□□□ 0.29
CLSTN3-213ENST00000541953 TRMT61BQ9BVS5 477 aaKnown RBP16.88■□□□□ 0.29
CLSTN3-213ENST00000541953 CHRDQ9H2X0 955 aa16.88■□□□□ 0.29
CLSTN3-213ENST00000541953 C2orf42Q9NWW7 574 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms