RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 SATB1Q01826 763 aa8.02□□□□□ -1.13
YBX3-209ENST00000540747 DMWDQ09019 674 aa8.02□□□□□ -1.13
YBX3-209ENST00000540747 PTGDRQ13258 359 aa8.02□□□□□ -1.13
YBX3-209ENST00000540747 PPP2R5AQ15172 486 aa8.02□□□□□ -1.13
YBX3-209ENST00000540747 ME3Q16798 604 aa8.02□□□□□ -1.13
YBX3-209ENST00000540747 TMC8Q8IU68 726 aa8.02□□□□□ -1.13
YBX3-209ENST00000540747 HS6ST3Q8IZP7 471 aa8.02□□□□□ -1.13
YBX3-209ENST00000540747 DEPTORQ8TB45 409 aa8.02□□□□□ -1.13
YBX3-209ENST00000540747 SHKBP1Q8TBC3 707 aa8.02□□□□□ -1.13
YBX3-209ENST00000540747 NETO1Q8TDF5 533 aa8.02□□□□□ -1.13
YBX3-209ENST00000540747 DEPDC1BQ8WUY9 529 aa8.02□□□□□ -1.13
YBX3-209ENST00000540747 FAM3CQ92520 227 aa8.02□□□□□ -1.13
YBX3-209ENST00000540747 KIFAP3Q92845 792 aa8.02□□□□□ -1.13
YBX3-209ENST00000540747 IRF7Q92985 503 aa8.02□□□□□ -1.13
YBX3-209ENST00000540747 SUSD3Q96L08 255 aa8.02□□□□□ -1.13
YBX3-209ENST00000540747 ACO2Q99798 780 aaKnown RBP8.02□□□□□ -1.13
YBX3-209ENST00000540747 CORO1BQ9BR76 489 aa8.02□□□□□ -1.13
YBX3-209ENST00000540747 TRMT61BQ9BVS5 477 aaKnown RBP8.02□□□□□ -1.13
YBX3-209ENST00000540747 BRD9Q9H8M2 597 aa8.02□□□□□ -1.13
YBX3-209ENST00000540747 BRMS1Q9HCU9 246 aa8.02□□□□□ -1.13
YBX3-209ENST00000540747 CNTN3Q9P232 1028 aa8.02□□□□□ -1.13
YBX3-209ENST00000540747 ARHGAP28Q9P2N2 729 aa8.02□□□□□ -1.13
YBX3-209ENST00000540747 AFF4Q9UHB7 1163 aaKnown RBP8.02□□□□□ -1.13
YBX3-209ENST00000540747 GMEB2Q9UKD1 530 aa8.02□□□□□ -1.13
YBX3-209ENST00000540747 MAFFQ9ULX9 164 aa8.02□□□□□ -1.13
YBX3-209ENST00000540747 USP18Q9UMW8 372 aa8.02□□□□□ -1.13
YBX3-209ENST00000540747 NDRG2Q9UN36 371 aaKnown RBP8.02□□□□□ -1.13
YBX3-209ENST00000540747 DYNC1LI1Q9Y6G9 523 aaKnown RBP8.02□□□□□ -1.13
YBX3-209ENST00000540747 PIAS3Q9Y6X2 628 aa8.02□□□□□ -1.13
YBX3-209ENST00000540747 SPEGQ15772 3267 aa8.02□□□□□ -1.13
YBX3-209ENST00000540747 PHLPP2Q6ZVD8 1323 aa8.02□□□□□ -1.13
YBX3-209ENST00000540747 TICRRQ7Z2Z1 1910 aa8.01□□□□□ -1.13
YBX3-209ENST00000540747 ARHGEF35A5YM69 484 aa8.01□□□□□ -1.13
YBX3-209ENST00000540747 PRRG1O14668 218 aa8.01□□□□□ -1.13
YBX3-209ENST00000540747 HRO43593 1189 aa8.01□□□□□ -1.13
YBX3-209ENST00000540747 JAK2O60674 1132 aa8.01□□□□□ -1.13
YBX3-209ENST00000540747 GDI1P31150 447 aa8.01□□□□□ -1.13
YBX3-209ENST00000540747 RPL9P32969 192 aaKnown RBP8.01□□□□□ -1.13
YBX3-209ENST00000540747 VIPR2P41587 438 aa8.01□□□□□ -1.13
YBX3-209ENST00000540747 AARSP49588 968 aaKnown RBP eCLIP8.01□□□□□ -1.13
YBX3-209ENST00000540747 ANAPC15P60006 121 aa8.01□□□□□ -1.13
YBX3-209ENST00000540747 FCHO2Q0JRZ9 810 aa8.01□□□□□ -1.13
YBX3-209ENST00000540747 SPEM2Q0P670 501 aa8.01□□□□□ -1.13
YBX3-209ENST00000540747 MAPK7Q13164 816 aa8.01□□□□□ -1.13
YBX3-209ENST00000540747 ORC2Q13416 577 aaPredicted RBP8.01□□□□□ -1.13
YBX3-209ENST00000540747 CSRP2Q16527 193 aa8.01□□□□□ -1.13
YBX3-209ENST00000540747 PDZD4Q76G19 769 aaPredicted RBP8.01□□□□□ -1.13
YBX3-209ENST00000540747 MFSD6LQ8IWD5 586 aa8.01□□□□□ -1.13
YBX3-209ENST00000540747 SPEM1Q8N4L4 309 aa8.01□□□□□ -1.13
YBX3-209ENST00000540747 C4orf32Q8N8J7 132 aa8.01□□□□□ -1.13
YBX3-209ENST00000540747 NECAB1Q8N987 351 aa8.01□□□□□ -1.13
YBX3-209ENST00000540747 LEMD2Q8NC56 503 aa8.01□□□□□ -1.13
YBX3-209ENST00000540747 C18orf25Q96B23 403 aaPredicted RBP8.01□□□□□ -1.13
YBX3-209ENST00000540747 MSANTD3Q96H12 275 aa8.01□□□□□ -1.13
YBX3-209ENST00000540747 LRRC3BQ96PB8 259 aa8.01□□□□□ -1.13
YBX3-209ENST00000540747 MKNK1Q9BUB5 465 aa8.01□□□□□ -1.13
YBX3-209ENST00000540747 DNAJC25Q9H1X3 360 aa8.01□□□□□ -1.13
YBX3-209ENST00000540747 TMEM134Q9H6X4 195 aa8.01□□□□□ -1.13
YBX3-209ENST00000540747 LMAN1LQ9HAT1 526 aa8.01□□□□□ -1.13
YBX3-209ENST00000540747 CYP4F11Q9HBI6 524 aa8.01□□□□□ -1.13
YBX3-209ENST00000540747 POLD4Q9HCU8 107 aa8.01□□□□□ -1.13
YBX3-209ENST00000540747 SEMA4GQ9NTN9 838 aa8.01□□□□□ -1.13
YBX3-209ENST00000540747 SLC38A7Q9NVC3 462 aa8.01□□□□□ -1.13
YBX3-209ENST00000540747 C2orf42Q9NWW7 574 aa8.01□□□□□ -1.13
YBX3-209ENST00000540747 BAHCC1Q9P281 2608 aa8.01□□□□□ -1.13
YBX3-209ENST00000540747 SDK1Q7Z5N4 2213 aa8.01□□□□□ -1.13
YBX3-209ENST00000540747 ANKRD11Q6UB99 2663 aaPredicted RBP8□□□□□ -1.13
YBX3-209ENST00000540747 PKD1L2Q7Z442 2459 aa8□□□□□ -1.13
YBX3-209ENST00000540747 HEPACAM2A8MVW5 462 aa8□□□□□ -1.13
YBX3-209ENST00000540747 H7C4K7 107 aa8□□□□□ -1.13
YBX3-209ENST00000540747 M0QZQ0 153 aa8□□□□□ -1.13
YBX3-209ENST00000540747 TM4SF5O14894 197 aa8□□□□□ -1.13
YBX3-209ENST00000540747 CHADO15335 359 aa8□□□□□ -1.13
YBX3-209ENST00000540747 OAZ2O95190 189 aa8□□□□□ -1.13
YBX3-209ENST00000540747 OR52Z1P0C646 297 aa8□□□□□ -1.13
YBX3-209ENST00000540747 MCF2P10911 925 aa8□□□□□ -1.13
YBX3-209ENST00000540747 LIG1P18858 919 aa8□□□□□ -1.13
YBX3-209ENST00000540747 HOXC13P31276 330 aa8□□□□□ -1.13
YBX3-209ENST00000540747 ELF1P32519 619 aa8□□□□□ -1.13
YBX3-209ENST00000540747 MCM7P33993 719 aa8□□□□□ -1.13
YBX3-209ENST00000540747 CNR2P34972 360 aa8□□□□□ -1.13
YBX3-209ENST00000540747 NPTX2P47972 431 aa8□□□□□ -1.13
YBX3-209ENST00000540747 CXCL12P48061 93 aa8□□□□□ -1.13
YBX3-209ENST00000540747 FXR2P51116 673 aaKnown RBP eCLIP8□□□□□ -1.13
YBX3-209ENST00000540747 TWF1Q12792 350 aa8□□□□□ -1.13
YBX3-209ENST00000540747 ANKRD1Q15327 319 aa8□□□□□ -1.13
YBX3-209ENST00000540747 LPAL2Q16609 132 aa8□□□□□ -1.13
YBX3-209ENST00000540747 TMEM132AQ24JP5 1023 aa8□□□□□ -1.13
YBX3-209ENST00000540747 ZNF568Q3ZCX4 644 aa8□□□□□ -1.13
YBX3-209ENST00000540747 PPM1JQ5JR12 505 aa8□□□□□ -1.13
YBX3-209ENST00000540747 ZNF280DQ6N043 979 aa8□□□□□ -1.13
YBX3-209ENST00000540747 TXNDC11Q6PKC3 985 aa8□□□□□ -1.13
YBX3-209ENST00000540747 RNF19BQ6ZMZ0 732 aa8□□□□□ -1.13
YBX3-209ENST00000540747 PRR23CQ6ZRP0 262 aa8□□□□□ -1.13
YBX3-209ENST00000540747 Q6ZS52 159 aa8□□□□□ -1.13
YBX3-209ENST00000540747 TMEM130Q8N3G9 435 aa8□□□□□ -1.13
YBX3-209ENST00000540747 ZSCAN18Q8TBC5 510 aaPredicted RBP8□□□□□ -1.13
YBX3-209ENST00000540747 IFT74Q96LB3 600 aa8□□□□□ -1.13
YBX3-209ENST00000540747 CCDC94Q9BW85 323 aaPredicted RBP8□□□□□ -1.13
YBX3-209ENST00000540747 BHMT2Q9H2M3 363 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms