RNA–Protein interactions for RNA: ENST00000540475.5

SEMA4D-223, Transcript of semaphorin 4D, humanhuman

TSL 3

Gene SEMA4D, Length 826 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-223ENST00000540475 FBXL5Q9UKA1 691 aa14.28□□□□□ -0.12
SEMA4D-223ENST00000540475 CPSF3Q9UKF6 684 aaKnown RBP14.28□□□□□ -0.12
SEMA4D-223ENST00000540475 UBQLN1Q9UMX0 589 aaKnown RBP14.28□□□□□ -0.12
SEMA4D-223ENST00000540475 PCDHB8Q9UN66 801 aa14.28□□□□□ -0.12
SEMA4D-223ENST00000540475 MTMR6Q9Y217 621 aa14.28□□□□□ -0.12
SEMA4D-223ENST00000540475 NUB1Q9Y5A7 615 aa14.28□□□□□ -0.12
SEMA4D-223ENST00000540475 TSC2P49815 1807 aa14.27□□□□□ -0.12
SEMA4D-223ENST00000540475 CFAP54Q96N23 3096 aa14.27□□□□□ -0.12
SEMA4D-223ENST00000540475 KRBA1A5PL33 1030 aa14.27□□□□□ -0.13
SEMA4D-223ENST00000540475 LACTBL1A8MY62 500 aa14.27□□□□□ -0.13
SEMA4D-223ENST00000540475 PROB1E7EW31 1015 aa14.27□□□□□ -0.13
SEMA4D-223ENST00000540475 K7ENM7 598 aa14.27□□□□□ -0.13
SEMA4D-223ENST00000540475 HNRNPDLO14979 420 aaKnown RBP14.27□□□□□ -0.13
SEMA4D-223ENST00000540475 DHX8Q14562 1220 aaKnown RBP14.27□□□□□ -0.13
SEMA4D-223ENST00000540475 SLC39A14Q15043 492 aa14.27□□□□□ -0.13
SEMA4D-223ENST00000540475 ZBTB41Q5SVQ8 909 aa14.27□□□□□ -0.13
SEMA4D-223ENST00000540475 SPATA1Q5VX52 437 aa14.27□□□□□ -0.13
SEMA4D-223ENST00000540475 PHLDB3Q6NSJ2 640 aa14.27□□□□□ -0.13
SEMA4D-223ENST00000540475 APPL2Q8NEU8 664 aa14.27□□□□□ -0.13
SEMA4D-223ENST00000540475 ITFG1Q8TB96 612 aa14.27□□□□□ -0.13
SEMA4D-223ENST00000540475 FGF14Q92915 247 aa14.27□□□□□ -0.13
SEMA4D-223ENST00000540475 HVCN1Q96D96 273 aa14.27□□□□□ -0.13
SEMA4D-223ENST00000540475 DNAJC19Q96DA6 116 aa14.27□□□□□ -0.13
SEMA4D-223ENST00000540475 RTP3Q9BQQ7 232 aa14.27□□□□□ -0.13
SEMA4D-223ENST00000540475 ZSCAN16Q9H4T2 348 aaPredicted RBP14.27□□□□□ -0.13
SEMA4D-223ENST00000540475 CCDC39Q9UFE4 941 aa14.27□□□□□ -0.13
SEMA4D-223ENST00000540475 DERAQ9Y315 318 aa14.27□□□□□ -0.13
SEMA4D-223ENST00000540475 NUMBLQ9Y6R0 609 aa14.27□□□□□ -0.13
SEMA4D-223ENST00000540475 TCHHQ07283 1943 aa14.26□□□□□ -0.13
SEMA4D-223ENST00000540475 XPOTO43592 962 aaKnown RBP14.26□□□□□ -0.13
SEMA4D-223ENST00000540475 PI15O43692 258 aa14.26□□□□□ -0.13
SEMA4D-223ENST00000540475 SEC24AO95486 1093 aa14.26□□□□□ -0.13
SEMA4D-223ENST00000540475 PTPN2P17706 415 aa14.26□□□□□ -0.13
SEMA4D-223ENST00000540475 MARCKSP29966 332 aaPredicted RBP14.26□□□□□ -0.13
SEMA4D-223ENST00000540475 NMT1P30419 496 aaKnown RBP14.26□□□□□ -0.13
SEMA4D-223ENST00000540475 PPP2R3AQ06190 1150 aa14.26□□□□□ -0.13
SEMA4D-223ENST00000540475 PABPC1LQ4VXU2 614 aaKnown RBP14.26□□□□□ -0.13
SEMA4D-223ENST00000540475 SPECC1Q5M775 1068 aa14.26□□□□□ -0.13
SEMA4D-223ENST00000540475 SLFN12LQ6IEE8 588 aa14.26□□□□□ -0.13
SEMA4D-223ENST00000540475 FAM173BQ6P4H8 233 aa14.26□□□□□ -0.13
SEMA4D-223ENST00000540475 POTEHQ6S545 545 aa14.26□□□□□ -0.13
SEMA4D-223ENST00000540475 PARM1Q6UWI2 310 aa14.26□□□□□ -0.13
SEMA4D-223ENST00000540475 MTSS1LQ765P7 747 aa14.26□□□□□ -0.13
SEMA4D-223ENST00000540475 NPAS3Q8IXF0 933 aa14.26□□□□□ -0.13
SEMA4D-223ENST00000540475 SIX5Q8N196 739 aa14.26□□□□□ -0.13
SEMA4D-223ENST00000540475 KRI1Q8N9T8 703 aaKnown RBP14.26□□□□□ -0.13
SEMA4D-223ENST00000540475 BICD1Q96G01 975 aa14.26□□□□□ -0.13
SEMA4D-223ENST00000540475 CLIC6Q96NY7 704 aa14.26□□□□□ -0.13
SEMA4D-223ENST00000540475 RPP25Q9BUL9 199 aaKnown RBP14.26□□□□□ -0.13
SEMA4D-223ENST00000540475 MFSD1Q9H3U5 465 aa14.26□□□□□ -0.13
SEMA4D-223ENST00000540475 RPF1Q9H9Y2 349 aaKnown RBP14.26□□□□□ -0.13
SEMA4D-223ENST00000540475 HCFC1R1Q9NWW0 138 aa14.26□□□□□ -0.13
SEMA4D-223ENST00000540475 GDE1Q9NZC3 331 aa14.26□□□□□ -0.13
SEMA4D-223ENST00000540475 SEL1LQ9UBV2 794 aa14.26□□□□□ -0.13
SEMA4D-223ENST00000540475 AFF4Q9UHB7 1163 aaKnown RBP14.26□□□□□ -0.13
SEMA4D-223ENST00000540475 MIA3Q5JRA6 1907 aa14.25□□□□□ -0.13
SEMA4D-223ENST00000540475 ANO9A1A5B4 782 aa14.25□□□□□ -0.13
SEMA4D-223ENST00000540475 FRMD3A2A2Y4 597 aa14.25□□□□□ -0.13
SEMA4D-223ENST00000540475 MYMKA6NI61 221 aa14.25□□□□□ -0.13
SEMA4D-223ENST00000540475 ANKRD63C9JTQ0 380 aa14.25□□□□□ -0.13
SEMA4D-223ENST00000540475 K7ELQ4 463 aaPredicted RBP14.25□□□□□ -0.13
SEMA4D-223ENST00000540475 PIRO00625 290 aa14.25□□□□□ -0.13
SEMA4D-223ENST00000540475 TBCAO75347 108 aaKnown RBP14.25□□□□□ -0.13
SEMA4D-223ENST00000540475 KRT18P05783 430 aaKnown RBP14.25□□□□□ -0.13
SEMA4D-223ENST00000540475 CFHP08603 1231 aa14.25□□□□□ -0.13
SEMA4D-223ENST00000540475 MCM4P33991 863 aa14.25□□□□□ -0.13
SEMA4D-223ENST00000540475 MATR3P43243 847 aaKnown RBP eCLIP14.25□□□□□ -0.13
SEMA4D-223ENST00000540475 NASPP49321 788 aaPredicted RBP14.25□□□□□ -0.13
SEMA4D-223ENST00000540475 SPAG1Q07617 926 aa14.25□□□□□ -0.13
SEMA4D-223ENST00000540475 CTXN3Q4LDR2 81 aa14.25□□□□□ -0.13
SEMA4D-223ENST00000540475 ZC2HC1CQ53FD0 456 aaPredicted RBP14.25□□□□□ -0.13
SEMA4D-223ENST00000540475 PRSS36Q5K4E3 855 aa14.25□□□□□ -0.13
SEMA4D-223ENST00000540475 ZNF280DQ6N043 979 aa14.25□□□□□ -0.13
SEMA4D-223ENST00000540475 CCDC105Q8IYK2 499 aa14.25□□□□□ -0.13
SEMA4D-223ENST00000540475 TMEM130Q8N3G9 435 aa14.25□□□□□ -0.13
SEMA4D-223ENST00000540475 SNX21Q969T3 373 aa14.25□□□□□ -0.13
SEMA4D-223ENST00000540475 KIF12Q96FN5 646 aa14.25□□□□□ -0.13
SEMA4D-223ENST00000540475 USP28Q96RU2 1077 aa14.25□□□□□ -0.13
SEMA4D-223ENST00000540475 MSTO1Q9BUK6 570 aa14.25□□□□□ -0.13
SEMA4D-223ENST00000540475 ASB7Q9H672 318 aa14.25□□□□□ -0.13
SEMA4D-223ENST00000540475 FBXL21Q9UKT6 434 aa14.25□□□□□ -0.13
SEMA4D-223ENST00000540475 FANCMQ8IYD8 2048 aa14.25□□□□□ -0.13
SEMA4D-223ENST00000540475 STX6O43752 255 aa14.24□□□□□ -0.13
SEMA4D-223ENST00000540475 VNN2O95498 520 aa14.24□□□□□ -0.13
SEMA4D-223ENST00000540475 RHOP08100 348 aa14.24□□□□□ -0.13
SEMA4D-223ENST00000540475 GAP43P17677 238 aa14.24□□□□□ -0.13
SEMA4D-223ENST00000540475 TYMPP19971 482 aa14.24□□□□□ -0.13
SEMA4D-223ENST00000540475 ADSSP30520 456 aa14.24□□□□□ -0.13
SEMA4D-223ENST00000540475 ELF1P32519 619 aa14.24□□□□□ -0.13
SEMA4D-223ENST00000540475 NBL1P41271 181 aa14.24□□□□□ -0.13
SEMA4D-223ENST00000540475 EPHA5P54756 1037 aa14.24□□□□□ -0.13
SEMA4D-223ENST00000540475 STARD6P59095 220 aa14.24□□□□□ -0.13
SEMA4D-223ENST00000540475 LILRA4P59901 499 aa14.24□□□□□ -0.13
SEMA4D-223ENST00000540475 YWHAHQ04917 246 aaPredicted RBP14.24□□□□□ -0.13
SEMA4D-223ENST00000540475 SLC5A9Q2M3M2 681 aa14.24□□□□□ -0.13
SEMA4D-223ENST00000540475 RRAGBQ5VZM2 374 aa14.24□□□□□ -0.13
SEMA4D-223ENST00000540475 CRELD2Q6UXH1 353 aaPredicted RBP14.24□□□□□ -0.13
SEMA4D-223ENST00000540475 CCDC73Q6ZRK6 1079 aa14.24□□□□□ -0.13
SEMA4D-223ENST00000540475 SV2BQ7L1I2 683 aa14.24□□□□□ -0.13
SEMA4D-223ENST00000540475 FLCNQ8NFG4 579 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 76.7 ms