RNA–Protein interactions for RNA: ENST00000533643.1

COMMD9-208, Transcript of COMM domain containing 9, human

TSL 2

Gene COMMD9, Length 580 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COMMD9-208	ENST00000533643	SLC11A1	P49279	550 aa		12.84	□□□□□ -0.35
COMMD9-208	ENST00000533643	BCAR1	P56945	870 aa		12.84	□□□□□ -0.35
COMMD9-208	ENST00000533643	UBASH3A	P57075	661 aa		12.84	□□□□□ -0.35
COMMD9-208	ENST00000533643	MYL6	P60660	151 aa		12.84	□□□□□ -0.35
COMMD9-208	ENST00000533643	UBXN1	Q04323	297 aa		12.84	□□□□□ -0.35
COMMD9-208	ENST00000533643	TRPC3	Q13507	836 aa		12.84	□□□□□ -0.35
COMMD9-208	ENST00000533643	NR1I3	Q14994	352 aa		12.84	□□□□□ -0.35
COMMD9-208	ENST00000533643	FILIP1L	Q4L180	1135 aa		12.84	□□□□□ -0.35
COMMD9-208	ENST00000533643	DCLRE1A	Q6PJP8	1040 aa		12.84	□□□□□ -0.35
COMMD9-208	ENST00000533643	SARM1	Q6SZW1	724 aa		12.84	□□□□□ -0.35
COMMD9-208	ENST00000533643	CD300LG	Q6UXG3	332 aa		12.84	□□□□□ -0.35
COMMD9-208	ENST00000533643	EHBP1	Q8NDI1	1231 aa		12.84	□□□□□ -0.35
COMMD9-208	ENST00000533643	C3orf58	Q8NDZ4	430 aa		12.84	□□□□□ -0.35
COMMD9-208	ENST00000533643	FBXL13	Q8NEE6	735 aa		12.84	□□□□□ -0.35
COMMD9-208	ENST00000533643	LMO3	Q8TAP4	145 aa		12.84	□□□□□ -0.35
COMMD9-208	ENST00000533643	ELMO3	Q96BJ8	720 aa		12.84	□□□□□ -0.35
COMMD9-208	ENST00000533643	CRACR2A	Q9BSW2	395 aa		12.84	□□□□□ -0.35
COMMD9-208	ENST00000533643	XYLT2	Q9H1B5	865 aa		12.84	□□□□□ -0.35
COMMD9-208	ENST00000533643	RAB20	Q9NX57	234 aa		12.84	□□□□□ -0.35
COMMD9-208	ENST00000533643	YBX2	Q9Y2T7	364 aa	Known RBP	12.84	□□□□□ -0.35
COMMD9-208	ENST00000533643	PCDHA11	Q9Y5I1	949 aa		12.84	□□□□□ -0.35
COMMD9-208	ENST00000533643	LAMA2	P24043	3122 aa	Known RBP	12.84	□□□□□ -0.35
COMMD9-208	ENST00000533643	PDCD11	Q14690	1871 aa	Known RBP	12.83	□□□□□ -0.36
COMMD9-208	ENST00000533643	GTPBP10	A4D1E9	387 aa	Known RBP	12.83	□□□□□ -0.36
COMMD9-208	ENST00000533643	NRP1	O14786	923 aa		12.83	□□□□□ -0.36
COMMD9-208	ENST00000533643	SPTLC1	O15269	473 aa		12.83	□□□□□ -0.36
COMMD9-208	ENST00000533643	ARHGEF15	O94989	841 aa		12.83	□□□□□ -0.36
COMMD9-208	ENST00000533643	LINC00271	P0C7V0	271 aa		12.83	□□□□□ -0.36
COMMD9-208	ENST00000533643	PBX2	P40425	430 aa		12.83	□□□□□ -0.36
COMMD9-208	ENST00000533643	PBX3	P40426	434 aa		12.83	□□□□□ -0.36
COMMD9-208	ENST00000533643	KCNMA1	Q12791	1236 aa		12.83	□□□□□ -0.36
COMMD9-208	ENST00000533643	SPOUT1	Q5T280	376 aa	Known RBP	12.83	□□□□□ -0.36
COMMD9-208	ENST00000533643	KCNT2	Q6UVM3	1135 aa		12.83	□□□□□ -0.36
COMMD9-208	ENST00000533643	GBP6	Q6ZN66	633 aa		12.83	□□□□□ -0.36
COMMD9-208	ENST00000533643	LRRC52	Q8N7C0	313 aa		12.83	□□□□□ -0.36
COMMD9-208	ENST00000533643	COLGALT1	Q8NBJ5	622 aa		12.83	□□□□□ -0.36
COMMD9-208	ENST00000533643	CLP1	Q92989	425 aa	Known RBP	12.83	□□□□□ -0.36
COMMD9-208	ENST00000533643	HPDL	Q96IR7	371 aa		12.83	□□□□□ -0.36
COMMD9-208	ENST00000533643	PI4K2A	Q9BTU6	479 aa		12.83	□□□□□ -0.36
COMMD9-208	ENST00000533643	COLEC11	Q9BWP8	271 aa		12.83	□□□□□ -0.36
COMMD9-208	ENST00000533643	XPO4	Q9C0E2	1151 aa	Known RBP	12.83	□□□□□ -0.36
COMMD9-208	ENST00000533643	INTS2	Q9H0H0	1204 aa	Known RBP	12.83	□□□□□ -0.36
COMMD9-208	ENST00000533643	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	12.83	□□□□□ -0.36
COMMD9-208	ENST00000533643	FAN1	Q9Y2M0	1017 aa		12.83	□□□□□ -0.36
COMMD9-208	ENST00000533643	PRG3	Q9Y2Y8	225 aa	Predicted RBP	12.83	□□□□□ -0.36
COMMD9-208	ENST00000533643	LINC01553	A4QN01	128 aa		12.82	□□□□□ -0.36
COMMD9-208	ENST00000533643	GOLGA6L3	A6NEY3	463 aa		12.82	□□□□□ -0.36
COMMD9-208	ENST00000533643	NT5C1B-RDH14	C9J2C7	533 aa		12.82	□□□□□ -0.36
COMMD9-208	ENST00000533643	KIF4A	O95239	1232 aa		12.82	□□□□□ -0.36
COMMD9-208	ENST00000533643	STAU1	O95793	577 aa	Known RBP	12.82	□□□□□ -0.36
COMMD9-208	ENST00000533643	ASS1	P00966	412 aa	Known RBP	12.82	□□□□□ -0.36
COMMD9-208	ENST00000533643	ITGB1	P05556	798 aa		12.82	□□□□□ -0.36
COMMD9-208	ENST00000533643	LAG3	P18627	525 aa		12.82	□□□□□ -0.36
COMMD9-208	ENST00000533643	SLC9A1	P19634	815 aa		12.82	□□□□□ -0.36
COMMD9-208	ENST00000533643	PON1	P27169	355 aa		12.82	□□□□□ -0.36
COMMD9-208	ENST00000533643	ATIC	P31939	592 aa		12.82	□□□□□ -0.36
COMMD9-208	ENST00000533643	ALDH7A1	P49419	539 aa	Known RBP	12.82	□□□□□ -0.36
COMMD9-208	ENST00000533643	LILRA4	P59901	499 aa		12.82	□□□□□ -0.36
COMMD9-208	ENST00000533643	PLCB2	Q00722	1185 aa		12.82	□□□□□ -0.36
COMMD9-208	ENST00000533643	CETN1	Q12798	172 aa		12.82	□□□□□ -0.36
COMMD9-208	ENST00000533643	SYCP1	Q15431	976 aa		12.82	□□□□□ -0.36
COMMD9-208	ENST00000533643	PTPN21	Q16825	1174 aa		12.82	□□□□□ -0.36
COMMD9-208	ENST00000533643	EXOC3L4	Q17RC7	722 aa		12.82	□□□□□ -0.36
COMMD9-208	ENST00000533643	SGSM1	Q2NKQ1	1148 aa		12.82	□□□□□ -0.36
COMMD9-208	ENST00000533643	FKBP15	Q5T1M5	1219 aa		12.82	□□□□□ -0.36
COMMD9-208	ENST00000533643	DPY19L2P1	Q6NXN4	242 aa		12.82	□□□□□ -0.36
COMMD9-208	ENST00000533643	BCL7C	Q8WUZ0	217 aa	Predicted RBP	12.82	□□□□□ -0.36
COMMD9-208	ENST00000533643	TAF4B	Q92750	862 aa		12.82	□□□□□ -0.36
COMMD9-208	ENST00000533643	ZNF558	Q96NG5	402 aa		12.82	□□□□□ -0.36
COMMD9-208	ENST00000533643	ERGIC2	Q96RQ1	377 aa		12.82	□□□□□ -0.36
COMMD9-208	ENST00000533643	PBX4	Q9BYU1	374 aa		12.82	□□□□□ -0.36
COMMD9-208	ENST00000533643	APOBEC3G	Q9HC16	384 aa	Known RBP	12.82	□□□□□ -0.36
COMMD9-208	ENST00000533643	MARCH5	Q9NX47	278 aa		12.82	□□□□□ -0.36
COMMD9-208	ENST00000533643	GCNT4	Q9P109	453 aa		12.82	□□□□□ -0.36
COMMD9-208	ENST00000533643	SIK3	Q9Y2K2	1263 aa		12.82	□□□□□ -0.36
COMMD9-208	ENST00000533643	R3HCC1	Q9Y3T6	440 aa	Known RBP	12.82	□□□□□ -0.36
COMMD9-208	ENST00000533643	TMEM189-UBE2V1	I3L0A0	370 aa		12.81	□□□□□ -0.36
COMMD9-208	ENST00000533643	CBFA2T2	O43439	604 aa		12.81	□□□□□ -0.36
COMMD9-208	ENST00000533643	B3GAT3	O94766	335 aa		12.81	□□□□□ -0.36
COMMD9-208	ENST00000533643	CA3	P07451	260 aa		12.81	□□□□□ -0.36
COMMD9-208	ENST00000533643	PNPLA4	P41247	253 aa		12.81	□□□□□ -0.36
COMMD9-208	ENST00000533643	TAF6	P49848	677 aa		12.81	□□□□□ -0.36
COMMD9-208	ENST00000533643	KLK7	P49862	253 aa		12.81	□□□□□ -0.36
COMMD9-208	ENST00000533643	APBA1	Q02410	837 aa		12.81	□□□□□ -0.36
COMMD9-208	ENST00000533643	MYO1E	Q12965	1108 aa		12.81	□□□□□ -0.36
COMMD9-208	ENST00000533643	ZNF699	Q32M78	642 aa		12.81	□□□□□ -0.36
COMMD9-208	ENST00000533643	SV2C	Q496J9	727 aa		12.81	□□□□□ -0.36
COMMD9-208	ENST00000533643	WDR44	Q5JSH3	913 aa		12.81	□□□□□ -0.36
COMMD9-208	ENST00000533643	SPOPL	Q6IQ16	392 aa		12.81	□□□□□ -0.36
COMMD9-208	ENST00000533643	TMEM173	Q86WV6	379 aa	Predicted RBP	12.81	□□□□□ -0.36
COMMD9-208	ENST00000533643	SLC39A11	Q8N1S5	342 aa		12.81	□□□□□ -0.36
COMMD9-208	ENST00000533643	HASPIN	Q8TF76	798 aa		12.81	□□□□□ -0.36
COMMD9-208	ENST00000533643	TATDN2	Q93075	761 aa		12.81	□□□□□ -0.36
COMMD9-208	ENST00000533643	IGSF21	Q96ID5	467 aa		12.81	□□□□□ -0.36
COMMD9-208	ENST00000533643	ZNF560	Q96MR9	790 aa		12.81	□□□□□ -0.36
COMMD9-208	ENST00000533643	VRTN	Q9H8Y1	702 aa		12.81	□□□□□ -0.36
COMMD9-208	ENST00000533643	SIX2	Q9NPC8	291 aa		12.81	□□□□□ -0.36
COMMD9-208	ENST00000533643	AAAS	Q9NRG9	546 aa		12.81	□□□□□ -0.36
COMMD9-208	ENST00000533643	SPG21	Q9NZD8	308 aa		12.81	□□□□□ -0.36
COMMD9-208	ENST00000533643	MSRA	Q9UJ68	235 aa		12.81	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 117.2 ms