RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 ZNF516Q92618 1163 aa20.29■□□□□ 0.84
VPS28-207ENST00000526977 SEMA4DQ92854 862 aa20.29■□□□□ 0.84
VPS28-207ENST00000526977 FAM212AQ96EL1 285 aa20.29■□□□□ 0.84
VPS28-207ENST00000526977 SYT11Q9BT88 431 aa20.29■□□□□ 0.84
VPS28-207ENST00000526977 TMEM106CQ9BVX2 250 aa20.29■□□□□ 0.84
VPS28-207ENST00000526977 BTNL10A8MVZ5 291 aa20.29■□□□□ 0.84
VPS28-207ENST00000526977 C4BPAP04003 597 aaKnown RBP20.29■□□□□ 0.84
VPS28-207ENST00000526977 COL6A1P12109 1028 aa20.29■□□□□ 0.84
VPS28-207ENST00000526977 PRLRP16471 622 aa20.29■□□□□ 0.84
VPS28-207ENST00000526977 NAP1L1P55209 391 aaKnown RBP20.29■□□□□ 0.84
VPS28-207ENST00000526977 WNT7BP56706 349 aa20.29■□□□□ 0.84
VPS28-207ENST00000526977 TUBB4BP68371 445 aa20.29■□□□□ 0.84
VPS28-207ENST00000526977 ZACNQ401N2 412 aa20.29■□□□□ 0.84
VPS28-207ENST00000526977 ANKRD33Q7Z3H0 272 aa20.29■□□□□ 0.84
VPS28-207ENST00000526977 FMNL3Q8IVF7 1028 aa20.29■□□□□ 0.84
VPS28-207ENST00000526977 TOX2Q96NM4 488 aa20.29■□□□□ 0.84
VPS28-207ENST00000526977 EIF2AQ9BY44 585 aaKnown RBP20.29■□□□□ 0.84
VPS28-207ENST00000526977 PLEKHA5Q9HAU0 1116 aa20.29■□□□□ 0.84
VPS28-207ENST00000526977 SNX12Q9UMY4 172 aa20.29■□□□□ 0.84
VPS28-207ENST00000526977 CCDC172P0C7W6 258 aa20.28■□□□□ 0.84
VPS28-207ENST00000526977 CXCL8P10145 99 aa20.28■□□□□ 0.84
VPS28-207ENST00000526977 PAK2Q13177 524 aa20.28■□□□□ 0.84
VPS28-207ENST00000526977 DUOXA2Q1HG44 320 aa20.28■□□□□ 0.84
VPS28-207ENST00000526977 TWF2Q6IBS0 349 aaKnown RBP20.28■□□□□ 0.84
VPS28-207ENST00000526977 DNAAF5Q86Y56 855 aa20.28■□□□□ 0.84
VPS28-207ENST00000526977 TMEM192Q8IY95 271 aa20.28■□□□□ 0.84
VPS28-207ENST00000526977 AGO3Q9H9G7 860 aaKnown RBP20.28■□□□□ 0.84
VPS28-207ENST00000526977 ERVK-5Q9HDB9 667 aa20.28■□□□□ 0.84
VPS28-207ENST00000526977 TOPORSQ9NS56 1045 aaPredicted RBP20.28■□□□□ 0.84
VPS28-207ENST00000526977 PADI3Q9ULW8 664 aa20.28■□□□□ 0.84
VPS28-207ENST00000526977 ZNF185O15231 689 aa20.27■□□□□ 0.84
VPS28-207ENST00000526977 YARSP54577 528 aaKnown RBP20.27■□□□□ 0.84
VPS28-207ENST00000526977 LPIN1Q14693 890 aa20.27■□□□□ 0.84
VPS28-207ENST00000526977 LNX1Q8TBB1 728 aaPredicted RBP20.27■□□□□ 0.84
VPS28-207ENST00000526977 MMS19Q96T76 1030 aa20.27■□□□□ 0.84
VPS28-207ENST00000526977 RAB20Q9NX57 234 aa20.27■□□□□ 0.84
VPS28-207ENST00000526977 GHRP10912 638 aa20.27■□□□□ 0.84
VPS28-207ENST00000526977 SELPP16109 830 aa20.27■□□□□ 0.84
VPS28-207ENST00000526977 SLC10A6Q3KNW5 377 aa20.27■□□□□ 0.84
VPS28-207ENST00000526977 UBXN11Q5T124 520 aa20.27■□□□□ 0.84
VPS28-207ENST00000526977 TRAF7Q6Q0C0 670 aa20.27■□□□□ 0.84
VPS28-207ENST00000526977 PARD6BQ9BYG5 372 aa20.27■□□□□ 0.84
VPS28-207ENST00000526977 LACTBL1A8MY62 500 aa20.26■□□□□ 0.83
VPS28-207ENST00000526977 DCDC2CA8MYV0 355 aa20.26■□□□□ 0.83
VPS28-207ENST00000526977 PITPNM1O00562 1244 aa20.26■□□□□ 0.83
VPS28-207ENST00000526977 PQBP1O60828 265 aaKnown RBP20.26■□□□□ 0.83
VPS28-207ENST00000526977 PALMO75781 387 aa20.26■□□□□ 0.83
VPS28-207ENST00000526977 CD52P31358 61 aa20.26■□□□□ 0.83
VPS28-207ENST00000526977 ATN1P54259 1190 aaPredicted RBP20.26■□□□□ 0.83
VPS28-207ENST00000526977 FAM43BQ6ZT52 329 aaPredicted RBP20.26■□□□□ 0.83
VPS28-207ENST00000526977 NT5DC4Q86YG4 428 aa20.26■□□□□ 0.83
VPS28-207ENST00000526977 GLYCTKQ8IVS8 523 aa20.26■□□□□ 0.83
VPS28-207ENST00000526977 KAT5Q92993 513 aa20.26■□□□□ 0.83
VPS28-207ENST00000526977 CAPZA3Q96KX2 299 aa20.26■□□□□ 0.83
VPS28-207ENST00000526977 TLR10Q9BXR5 811 aa20.26■□□□□ 0.83
VPS28-207ENST00000526977 SNTG2Q9NY99 539 aa20.26■□□□□ 0.83
VPS28-207ENST00000526977 PCDHGC5Q9Y5F6 944 aa20.26■□□□□ 0.83
VPS28-207ENST00000526977 CLCN6P51797 869 aa20.26■□□□□ 0.83
VPS28-207ENST00000526977 BIRC3Q13489 604 aa20.26■□□□□ 0.83
VPS28-207ENST00000526977 LMBRD2Q68DH5 695 aaPredicted RBP20.26■□□□□ 0.83
VPS28-207ENST00000526977 LRRC8DQ7L1W4 858 aa20.26■□□□□ 0.83
VPS28-207ENST00000526977 CREG2Q8IUH2 290 aa20.26■□□□□ 0.83
VPS28-207ENST00000526977 TAS1R2Q8TE23 839 aa20.26■□□□□ 0.83
VPS28-207ENST00000526977 ANKRD36BP1Q96IX9 119 aa20.26■□□□□ 0.83
VPS28-207ENST00000526977 ARID3AQ99856 593 aa20.26■□□□□ 0.83
VPS28-207ENST00000526977 TRAIPQ9BWF2 469 aa20.26■□□□□ 0.83
VPS28-207ENST00000526977 UTP3Q9NQZ2 479 aaKnown RBP eCLIP20.26■□□□□ 0.831e-6■■■■■ 37.9
VPS28-207ENST00000526977 MYH10P35580 1976 aa20.25■□□□□ 0.83
VPS28-207ENST00000526977 PTPRJQ12913 1337 aa20.25■□□□□ 0.83
VPS28-207ENST00000526977 PDE2AO00408 941 aaPredicted RBP20.25■□□□□ 0.83
VPS28-207ENST00000526977 NCK2O43639 380 aa20.25■□□□□ 0.83
VPS28-207ENST00000526977 ZC3H11AO75152 810 aaKnown RBP eCLIP20.25■□□□□ 0.837e-6■■■■■ 33.7
VPS28-207ENST00000526977 H2AFZP0C0S5 128 aa20.25■□□□□ 0.83
VPS28-207ENST00000526977 TDRD10Q5VZ19 366 aaKnown RBP20.25■□□□□ 0.83
VPS28-207ENST00000526977 H2AFVQ71UI9 128 aa20.25■□□□□ 0.83
VPS28-207ENST00000526977 NOA1Q8NC60 698 aaKnown RBP20.25■□□□□ 0.83
VPS28-207ENST00000526977 OR5B17Q8NGF7 314 aa20.25■□□□□ 0.83
VPS28-207ENST00000526977 KREMEN1Q96MU8 473 aa20.25■□□□□ 0.83
VPS28-207ENST00000526977 ANKZF1Q9H8Y5 726 aa20.25■□□□□ 0.83
VPS28-207ENST00000526977 INTUQ9ULD6 942 aa20.25■□□□□ 0.83
VPS28-207ENST00000526977 C2CD2Q9Y426 696 aa20.25■□□□□ 0.83
VPS28-207ENST00000526977 ATP8B3O60423 1300 aa20.25■□□□□ 0.83
VPS28-207ENST00000526977 PHACTR2O75167 634 aa20.24■□□□□ 0.83
VPS28-207ENST00000526977 TNNC2P02585 160 aa20.24■□□□□ 0.83
VPS28-207ENST00000526977 TMEM191BP0C7N4 346 aa20.24■□□□□ 0.83
VPS28-207ENST00000526977 TNFAIP3P21580 790 aa20.24■□□□□ 0.83
VPS28-207ENST00000526977 TFAMQ00059 246 aaKnown RBP20.24■□□□□ 0.83
VPS28-207ENST00000526977 HACE1Q8IYU2 909 aa20.24■□□□□ 0.83
VPS28-207ENST00000526977 COG1Q8WTW3 980 aa20.24■□□□□ 0.83
VPS28-207ENST00000526977 TSPAN18Q96SJ8 248 aa20.24■□□□□ 0.83
VPS28-207ENST00000526977 OSBPL9Q96SU4 736 aa20.24■□□□□ 0.83
VPS28-207ENST00000526977 C11orf49Q9H6J7 331 aa20.24■□□□□ 0.83
VPS28-207ENST00000526977 ZNF446Q9NWS9 450 aa20.24■□□□□ 0.83
VPS28-207ENST00000526977 DERAQ9Y315 318 aa20.24■□□□□ 0.83
VPS28-207ENST00000526977 IPPQ9Y573 584 aa20.24■□□□□ 0.83
VPS28-207ENST00000526977 CKAP4Q07065 602 aaKnown RBP20.24■□□□□ 0.83
VPS28-207ENST00000526977 HELQQ8TDG4 1101 aa20.24■□□□□ 0.83
VPS28-207ENST00000526977 DIS3LQ8TF46 1054 aaKnown RBP20.24■□□□□ 0.83
VPS28-207ENST00000526977 FAM81BQ96LP2 452 aa20.24■□□□□ 0.83
VPS28-207ENST00000526977 AGPAT1Q99943 283 aa20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms