RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 SLC12A1Q13621 1099 aa12.35□□□□□ -0.43
SYNPO-204ENST00000519664 CBWD6Q4V339 395 aa12.35□□□□□ -0.43
SYNPO-204ENST00000519664 CBWD3Q5JTY5 395 aa12.35□□□□□ -0.43
SYNPO-204ENST00000519664 CBWD5Q5RIA9 395 aa12.35□□□□□ -0.43
SYNPO-204ENST00000519664 AADACL2Q6P093 401 aa12.35□□□□□ -0.43
SYNPO-204ENST00000519664 TMEM139Q8IV31 216 aa12.35□□□□□ -0.43
SYNPO-204ENST00000519664 MORC4Q8TE76 937 aa12.35□□□□□ -0.43
SYNPO-204ENST00000519664 AKT1S1Q96B36 256 aa12.35□□□□□ -0.43
SYNPO-204ENST00000519664 PPWD1Q96BP3 646 aaKnown RBP12.35□□□□□ -0.43
SYNPO-204ENST00000519664 KCNN4O15554 427 aa12.35□□□□□ -0.43
SYNPO-204ENST00000519664 HUS1O60921 280 aa12.35□□□□□ -0.43
SYNPO-204ENST00000519664 RBP3P10745 1247 aa12.35□□□□□ -0.43
SYNPO-204ENST00000519664 PRLRP16471 622 aa12.35□□□□□ -0.43
SYNPO-204ENST00000519664 ERVK-9P63128 1117 aa12.35□□□□□ -0.43
SYNPO-204ENST00000519664 MEA1Q16626 185 aa12.35□□□□□ -0.43
SYNPO-204ENST00000519664 NBPF12Q5TAG4 269 aaPredicted RBP12.35□□□□□ -0.43
SYNPO-204ENST00000519664 TMCO4Q5TGY1 634 aa12.35□□□□□ -0.43
SYNPO-204ENST00000519664 TRIM72Q6ZMU5 477 aa12.35□□□□□ -0.43
SYNPO-204ENST00000519664 OTOP1Q7RTM1 612 aa12.35□□□□□ -0.43
SYNPO-204ENST00000519664 ATP11CQ8NB49 1132 aa12.35□□□□□ -0.43
SYNPO-204ENST00000519664 ATP8B4Q8TF62 1192 aa12.35□□□□□ -0.43
SYNPO-204ENST00000519664 YIPF3Q9GZM5 350 aa12.35□□□□□ -0.43
SYNPO-204ENST00000519664 VCX3AQ9NNX9 186 aa12.35□□□□□ -0.43
SYNPO-204ENST00000519664 DLG5Q8TDM6 1919 aa12.35□□□□□ -0.43
SYNPO-204ENST00000519664 KRT38O76015 456 aa12.35□□□□□ -0.43
SYNPO-204ENST00000519664 AGTP01019 485 aa12.35□□□□□ -0.43
SYNPO-204ENST00000519664 ITIH2P19823 946 aa12.35□□□□□ -0.43
SYNPO-204ENST00000519664 ROR1Q01973 937 aa12.35□□□□□ -0.43
SYNPO-204ENST00000519664 CRYMQ14894 314 aa12.35□□□□□ -0.43
SYNPO-204ENST00000519664 ECM1Q16610 540 aa12.35□□□□□ -0.43
SYNPO-204ENST00000519664 HEATR6Q6AI08 1181 aaKnown RBP12.35□□□□□ -0.43
SYNPO-204ENST00000519664 SPATA21Q7Z572 469 aa12.35□□□□□ -0.43
SYNPO-204ENST00000519664 CRLF3Q8IUI8 442 aa12.35□□□□□ -0.43
SYNPO-204ENST00000519664 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.35□□□□□ -0.43
SYNPO-204ENST00000519664 MYCBPAPQ8TBZ2 947 aa12.35□□□□□ -0.43
SYNPO-204ENST00000519664 CCDC124Q96CT7 223 aaKnown RBP12.35□□□□□ -0.43
SYNPO-204ENST00000519664 PURBQ96QR8 312 aaKnown RBP12.35□□□□□ -0.43
SYNPO-204ENST00000519664 MMP19Q99542 508 aa12.35□□□□□ -0.43
SYNPO-204ENST00000519664 FGFBP2Q9BYJ0 223 aa12.35□□□□□ -0.43
SYNPO-204ENST00000519664 CYP4F11Q9HBI6 524 aa12.35□□□□□ -0.43
SYNPO-204ENST00000519664 LRRC4BQ9NT99 713 aa12.35□□□□□ -0.43
SYNPO-204ENST00000519664 HACL1Q9UJ83 578 aa12.35□□□□□ -0.43
SYNPO-204ENST00000519664 GTF3C4Q9UKN8 822 aa12.35□□□□□ -0.43
SYNPO-204ENST00000519664 REXO2Q9Y3B8 237 aaKnown RBP12.35□□□□□ -0.43
SYNPO-204ENST00000519664 PFDN1O60925 122 aa12.35□□□□□ -0.43
SYNPO-204ENST00000519664 FAM107AO95990 144 aa12.35□□□□□ -0.43
SYNPO-204ENST00000519664 RARBP10826 455 aa12.35□□□□□ -0.43
SYNPO-204ENST00000519664 DNAJC3Q13217 504 aa12.35□□□□□ -0.43
SYNPO-204ENST00000519664 SCN4BQ8IWT1 228 aa12.35□□□□□ -0.43
SYNPO-204ENST00000519664 GSDMBQ8TAX9 411 aa12.35□□□□□ -0.43
SYNPO-204ENST00000519664 GMCL1Q96IK5 515 aa12.35□□□□□ -0.43
SYNPO-204ENST00000519664 PABPC3Q9H361 631 aaKnown RBP12.35□□□□□ -0.43
SYNPO-204ENST00000519664 SH3BP5O60239 455 aa12.34□□□□□ -0.43
SYNPO-204ENST00000519664 MYL3P08590 195 aa12.34□□□□□ -0.43
SYNPO-204ENST00000519664 MYBL1P10243 752 aa12.34□□□□□ -0.43
SYNPO-204ENST00000519664 MAGEA4P43358 317 aa12.34□□□□□ -0.43
SYNPO-204ENST00000519664 CXCL9Q07325 125 aa12.34□□□□□ -0.43
SYNPO-204ENST00000519664 KCNMA1Q12791 1236 aa12.34□□□□□ -0.43
SYNPO-204ENST00000519664 PRPSAP1Q14558 356 aa12.34□□□□□ -0.43
SYNPO-204ENST00000519664 C3orf62Q6ZUJ4 267 aa12.34□□□□□ -0.43
SYNPO-204ENST00000519664 DNAJC19Q96DA6 116 aa12.34□□□□□ -0.43
SYNPO-204ENST00000519664 PPP1R36Q96LQ0 422 aa12.34□□□□□ -0.43
SYNPO-204ENST00000519664 TTC1Q99614 292 aa12.34□□□□□ -0.43
SYNPO-204ENST00000519664 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.34□□□□□ -0.43
SYNPO-204ENST00000519664 IGSF9BQ9UPX0 1349 aa12.34□□□□□ -0.43
SYNPO-204ENST00000519664 DCTN3O75935 186 aa12.34□□□□□ -0.43
SYNPO-204ENST00000519664 ANXA13P27216 316 aa12.34□□□□□ -0.43
SYNPO-204ENST00000519664 CASP2P42575 452 aa12.34□□□□□ -0.43
SYNPO-204ENST00000519664 RARRES1P49788 294 aa12.34□□□□□ -0.43
SYNPO-204ENST00000519664 ARFIP2P53365 341 aa12.34□□□□□ -0.43
SYNPO-204ENST00000519664 TMEM119Q4V9L6 283 aa12.34□□□□□ -0.43
SYNPO-204ENST00000519664 LRRC55Q6ZSA7 311 aa12.34□□□□□ -0.43
SYNPO-204ENST00000519664 PID1Q7Z2X4 250 aa12.34□□□□□ -0.43
SYNPO-204ENST00000519664 SPATA20Q8TB22 786 aa12.34□□□□□ -0.43
SYNPO-204ENST00000519664 SPATA18Q8TC71 538 aa12.34□□□□□ -0.43
SYNPO-204ENST00000519664 SKA2Q8WVK7 121 aaPredicted RBP12.34□□□□□ -0.43
SYNPO-204ENST00000519664 TTC25Q96NG3 672 aa12.34□□□□□ -0.43
SYNPO-204ENST00000519664 GLIS2Q9BZE0 524 aaPredicted RBP12.34□□□□□ -0.43
SYNPO-204ENST00000519664 HSD3B7Q9H2F3 369 aa12.34□□□□□ -0.43
SYNPO-204ENST00000519664 NPHS2Q9NP85 383 aa12.34□□□□□ -0.43
SYNPO-204ENST00000519664 AIPL1Q9NZN9 384 aa12.34□□□□□ -0.43
SYNPO-204ENST00000519664 ATP9BO43861 1147 aa12.34□□□□□ -0.43
SYNPO-204ENST00000519664 MOCS2O96007 188 aaPredicted RBP12.34□□□□□ -0.43
SYNPO-204ENST00000519664 PGK2P07205 417 aa12.34□□□□□ -0.43
SYNPO-204ENST00000519664 SLC1A1P43005 524 aa12.34□□□□□ -0.43
SYNPO-204ENST00000519664 EFNA5P52803 228 aa12.34□□□□□ -0.43
SYNPO-204ENST00000519664 LRRC34Q8IZ02 419 aa12.34□□□□□ -0.43
SYNPO-204ENST00000519664 SYTL5Q8TDW5 730 aaPredicted RBP12.34□□□□□ -0.43
SYNPO-204ENST00000519664 ARHGEF26Q96DR7 871 aa12.34□□□□□ -0.43
SYNPO-204ENST00000519664 MTMR12Q9C0I1 747 aa12.34□□□□□ -0.43
SYNPO-204ENST00000519664 CYP26B1Q9NR63 512 aa12.34□□□□□ -0.43
SYNPO-204ENST00000519664 BNIP3LO60238 219 aa12.33□□□□□ -0.43
SYNPO-204ENST00000519664 DIAPH2O60879 1101 aa12.33□□□□□ -0.43
SYNPO-204ENST00000519664 PPFIA2O75334 1257 aa12.33□□□□□ -0.43
SYNPO-204ENST00000519664 PPATQ06203 517 aa12.33□□□□□ -0.43
SYNPO-204ENST00000519664 TRADDQ15628 312 aa12.33□□□□□ -0.43
SYNPO-204ENST00000519664 AMHR2Q16671 573 aa12.33□□□□□ -0.43
SYNPO-204ENST00000519664 NUDCD3Q8IVD9 361 aa12.33□□□□□ -0.43
SYNPO-204ENST00000519664 ARHGEF19Q8IW93 802 aa12.33□□□□□ -0.43
SYNPO-204ENST00000519664 WDR75Q8IWA0 830 aaKnown RBP12.33□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms