RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 CAPN3P20807 821 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 GPD1P21695 349 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 RRM1P23921 792 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 FPR2P25090 351 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 PSMA3P25788 255 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 CD40P25942 277 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 SMARCA1P28370 1054 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 TKTP29401 623 aaKnown RBP0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 OAS2P29728 719 aaKnown RBP0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 ATICP31939 592 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 ELF1P32519 619 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 CSF2RBP32927 897 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 LSP1P33241 339 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 HOXD12P35452 270 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 KRT9P35527 623 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 ADD2P35612 726 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 CHKAP35790 457 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 PPM1AP35813 382 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 BMPR1AP36894 532 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 IARSP41252 1262 aaKnown RBP0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 ADCYAP1R1P41586 468 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 TSPAN7P41732 249 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 GRIA2P42262 883 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 IL12RB1P42701 662 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 MAPK9P45984 424 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 ID4P47928 161 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 CLK1P49759 484 aaKnown RBP0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 MRE11P49959 708 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 MMP14P50281 582 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 KPNA1P52294 538 aaPredicted RBP0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 ADKP55263 362 aaKnown RBP0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 GFRA1P56159 465 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 PER3P56645 1201 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 C21orf58P58505 322 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 BPIFB4P59827 614 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 KRT83P78385 493 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 MPP1Q00013 466 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 ROR1Q01973 937 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 DSG1Q02413 1049 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 CREMQ03060 361 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 TNFAIP2Q03169 654 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 ICA1Q05084 483 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 GRIN1Q05586 938 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 FOXO1Q12778 655 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 SLC10A2Q12908 348 aaPredicted RBP0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 MAPK7Q13164 816 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 G3BP1Q13283 466 aaKnown RBP eCLIP0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 ADAM9Q13443 819 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 TOP3AQ13472 1001 aaPredicted RBP0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 SEMA5AQ13591 1074 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 RIN1Q13671 783 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 MOGSQ13724 837 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 LAMB3Q13751 1172 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 BLMHQ13867 455 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 TRIM14Q14142 442 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 DCTN1Q14203 1278 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 GALEQ14376 348 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 LRRC32Q14392 662 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 ZNF460Q14592 562 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 SMC1AQ14683 1233 aaKnown RBP0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 RRP1BQ14684 758 aaKnown RBP0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 ODF1Q14990 250 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 TMEM132BQ14DG7 1078 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 PSMD6Q15008 389 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 SEPT2Q15019 361 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 PCBP2Q15366 365 aaKnown RBP eCLIP0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 TOMM20Q15388 145 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 GPR162Q16538 588 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 CCNG2Q16589 344 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 SRSF7Q16629 238 aaKnown RBP eCLIP0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 KIAA0753Q2KHM9 967 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 ABCB5Q2M3G0 1257 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 TTC31Q49AM3 519 aaPredicted RBP0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 CERKLQ49MI3 558 aaPredicted RBP0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 ANO6Q4KMQ2 910 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 CCDC38Q502W7 563 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 CCDC184Q52MB2 194 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 PITRM1Q5JRX3 1037 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 SPECC1Q5M775 1068 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 PRR31Q5SQ13 230 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 ATAT1Q5SQI0 421 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 IFIT1BQ5T764 474 aaKnown RBP0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 C1QTNF12Q5T7M4 302 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 TEDDM1Q5T9Z0 273 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 MFSD4BQ5TF39 518 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 VPS53Q5VIR6 699 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 RNF220Q5VTB9 566 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 BROXQ5VW32 411 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 IZUMO3Q5VZ72 239 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 ITPRIPL1Q6GPH6 555 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 STYK1Q6J9G0 422 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 SWSAP1Q6NVH7 229 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 EFCAB12Q6NXP0 572 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 XRRA1Q6P2D8 792 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 C16orf54Q6UWD8 224 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 B3GNT9Q6UX72 402 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 MAMDC4Q6UXC1 1216 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 DSTYKQ6XUX3 929 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 ARHGAP36Q6ZRI8 547 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 CCDC149Q6ZUS6 474 aa0.67□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms