RNA–Protein interactions for RNA: ENST00000515035.5

TCOF1-214, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,240 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-214ENST00000515035 MANSC1Q9H8J5 431 aa13.96□□□□□ -0.18
TCOF1-214ENST00000515035 PCDHGB4Q9UN71 923 aa13.96□□□□□ -0.18
TCOF1-214ENST00000515035 AGLP35573 1532 aa13.95□□□□□ -0.18
TCOF1-214ENST00000515035 RFX7Q2KHR2 1363 aa13.95□□□□□ -0.18
TCOF1-214ENST00000515035 REREQ9P2R6 1566 aa13.95□□□□□ -0.18
TCOF1-214ENST00000515035 SETBP1Q9Y6X0 1596 aa13.95□□□□□ -0.18
TCOF1-214ENST00000515035 NMT2O60551 498 aa13.95□□□□□ -0.18
TCOF1-214ENST00000515035 MLH1P40692 756 aa13.95□□□□□ -0.18
TCOF1-214ENST00000515035 SERPINB9P50453 376 aa13.95□□□□□ -0.18
TCOF1-214ENST00000515035 MKRN4PQ13434 485 aaPredicted RBP13.95□□□□□ -0.18
TCOF1-214ENST00000515035 NAB2Q15742 525 aa13.95□□□□□ -0.18
TCOF1-214ENST00000515035 EPHA10Q5JZY3 1008 aa13.95□□□□□ -0.18
TCOF1-214ENST00000515035 PRUNE1Q86TP1 453 aa13.95□□□□□ -0.18
TCOF1-214ENST00000515035 RIBC1Q8N443 379 aaPredicted RBP13.95□□□□□ -0.18
TCOF1-214ENST00000515035 CNBD2Q96M20 576 aa13.95□□□□□ -0.18
TCOF1-214ENST00000515035 BARHL2Q9NY43 387 aa13.95□□□□□ -0.18
TCOF1-214ENST00000515035 PRKAG2Q9UGJ0 569 aa13.95□□□□□ -0.18
TCOF1-214ENST00000515035 FBXO40Q9UH90 709 aa13.95□□□□□ -0.18
TCOF1-214ENST00000515035 DIP2CQ9Y2E4 1556 aa13.95□□□□□ -0.18
TCOF1-214ENST00000515035 LAMC1P11047 1609 aa13.95□□□□□ -0.18
TCOF1-214ENST00000515035 PDXKO00764 312 aa13.95□□□□□ -0.18
TCOF1-214ENST00000515035 GH2P01242 217 aa13.95□□□□□ -0.18
TCOF1-214ENST00000515035 UCHL3P15374 230 aa13.95□□□□□ -0.18
TCOF1-214ENST00000515035 CIITAP33076 1130 aa13.95□□□□□ -0.18
TCOF1-214ENST00000515035 HSPA13P48723 471 aa13.95□□□□□ -0.18
TCOF1-214ENST00000515035 DPYDQ12882 1025 aa13.95□□□□□ -0.18
TCOF1-214ENST00000515035 TSGA10IPQ3SY00 556 aa13.95□□□□□ -0.18
TCOF1-214ENST00000515035 EFHC2Q5JST6 749 aa13.95□□□□□ -0.18
TCOF1-214ENST00000515035 WDR93Q6P2C0 686 aa13.95□□□□□ -0.18
TCOF1-214ENST00000515035 RCOR2Q8IZ40 523 aa13.95□□□□□ -0.18
TCOF1-214ENST00000515035 NDUFAF2Q8N183 169 aa13.95□□□□□ -0.18
TCOF1-214ENST00000515035 L1RE1Q9UN81 338 aa13.95□□□□□ -0.18
TCOF1-214ENST00000515035 SPATA31A1Q5TZJ5 1347 aa13.95□□□□□ -0.18
TCOF1-214ENST00000515035 APOL1O14791 398 aa13.95□□□□□ -0.18
TCOF1-214ENST00000515035 KCNN4O15554 427 aa13.95□□□□□ -0.18
TCOF1-214ENST00000515035 TDP2O95551 362 aa13.95□□□□□ -0.18
TCOF1-214ENST00000515035 RBBP7Q16576 425 aa13.95□□□□□ -0.18
TCOF1-214ENST00000515035 COBLL1Q53SF7 1204 aa13.95□□□□□ -0.18
TCOF1-214ENST00000515035 PLEKHM3Q6ZWE6 761 aa13.95□□□□□ -0.18
TCOF1-214ENST00000515035 REXO1L1PQ8IX06 675 aa13.95□□□□□ -0.18
TCOF1-214ENST00000515035 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.95□□□□□ -0.18
TCOF1-214ENST00000515035 DDI1Q8WTU0 396 aa13.95□□□□□ -0.18
TCOF1-214ENST00000515035 PGBD4Q96DM1 585 aa13.95□□□□□ -0.18
TCOF1-214ENST00000515035 STK33Q9BYT3 514 aa13.95□□□□□ -0.18
TCOF1-214ENST00000515035 MAD2L2Q9UI95 211 aa13.95□□□□□ -0.18
TCOF1-214ENST00000515035 CAMSAP1Q5T5Y3 1602 aa13.95□□□□□ -0.18
TCOF1-214ENST00000515035 RIMBP3CA6NJZ7 1639 aa13.95□□□□□ -0.18
TCOF1-214ENST00000515035 RIMBP3BA6NNM3 1639 aa13.95□□□□□ -0.18
TCOF1-214ENST00000515035 RIMBP3Q9UFD9 1639 aa13.95□□□□□ -0.18
TCOF1-214ENST00000515035 CLTCQ00610 1675 aaKnown RBP13.95□□□□□ -0.18
TCOF1-214ENST00000515035 MYO1DO94832 1006 aa13.95□□□□□ -0.18
TCOF1-214ENST00000515035 MTMR1Q13613 665 aa13.95□□□□□ -0.18
TCOF1-214ENST00000515035 PTK2BQ14289 1009 aa13.95□□□□□ -0.18
TCOF1-214ENST00000515035 RINLQ6ZS11 566 aa13.95□□□□□ -0.18
TCOF1-214ENST00000515035 ANKS1AQ92625 1134 aa13.95□□□□□ -0.18
TCOF1-214ENST00000515035 RAB6BQ9NRW1 208 aa13.95□□□□□ -0.18
TCOF1-214ENST00000515035 IQCA1LA6NCM1 817 aa13.94□□□□□ -0.18
TCOF1-214ENST00000515035 HNRNPRO43390 633 aaKnown RBP13.94□□□□□ -0.18
TCOF1-214ENST00000515035 ITIH4Q14624 930 aa13.94□□□□□ -0.18
TCOF1-214ENST00000515035 SETD3Q86TU7 594 aaPredicted RBP13.94□□□□□ -0.18
TCOF1-214ENST00000515035 CCDC103Q8IW40 242 aa13.94□□□□□ -0.18
TCOF1-214ENST00000515035 B4GALNT2Q8NHY0 566 aa13.94□□□□□ -0.18
TCOF1-214ENST00000515035 RFWD2Q8NHY2 731 aa13.94□□□□□ -0.18
TCOF1-214ENST00000515035 SH3RF3Q8TEJ3 882 aaPredicted RBP13.94□□□□□ -0.18
TCOF1-214ENST00000515035 E2F7Q96AV8 911 aa13.94□□□□□ -0.18
TCOF1-214ENST00000515035 AP4S1Q9Y587 144 aa13.94□□□□□ -0.18
TCOF1-214ENST00000515035 WEE2P0C1S8 567 aa13.94□□□□□ -0.18
TCOF1-214ENST00000515035 STAT3P40763 770 aa13.94□□□□□ -0.18
TCOF1-214ENST00000515035 KRT72Q14CN4 511 aa13.94□□□□□ -0.18
TCOF1-214ENST00000515035 ZNF568Q3ZCX4 644 aa13.94□□□□□ -0.18
TCOF1-214ENST00000515035 PPP1R18Q6NYC8 613 aa13.94□□□□□ -0.18
TCOF1-214ENST00000515035 ARID3BQ8IVW6 561 aaPredicted RBP13.94□□□□□ -0.18
TCOF1-214ENST00000515035 EPAS1Q99814 870 aa13.94□□□□□ -0.18
TCOF1-214ENST00000515035 TMEM245Q9H330 911 aa13.94□□□□□ -0.18
TCOF1-214ENST00000515035 TDRD3Q9H7E2 651 aaKnown RBP13.94□□□□□ -0.18
TCOF1-214ENST00000515035 ZHX2Q9Y6X8 837 aa13.94□□□□□ -0.18
TCOF1-214ENST00000515035 SNRPAP09012 282 aaKnown RBP13.94□□□□□ -0.18
TCOF1-214ENST00000515035 KCNJ1P48048 391 aa13.94□□□□□ -0.18
TCOF1-214ENST00000515035 COL23A1Q86Y22 540 aaPredicted RBP13.94□□□□□ -0.18
TCOF1-214ENST00000515035 TUBGCP3Q96CW5 907 aa13.94□□□□□ -0.18
TCOF1-214ENST00000515035 CCSER1Q9C0I3 900 aa13.94□□□□□ -0.18
TCOF1-214ENST00000515035 BRD8Q9H0E9 1235 aa13.94□□□□□ -0.18
TCOF1-214ENST00000515035 HAO1Q9UJM8 370 aa13.94□□□□□ -0.18
TCOF1-214ENST00000515035 CAB39Q9Y376 341 aaPredicted RBP13.94□□□□□ -0.18
TCOF1-214ENST00000515035 CDC42BPBQ9Y5S2 1711 aa13.94□□□□□ -0.18
TCOF1-214ENST00000515035 LRRIQ3A6PVS8 624 aaPredicted RBP13.94□□□□□ -0.18
TCOF1-214ENST00000515035 COPAP53621 1224 aa13.94□□□□□ -0.18
TCOF1-214ENST00000515035 NUP107P57740 925 aa13.94□□□□□ -0.18
TCOF1-214ENST00000515035 C3orf62Q6ZUJ4 267 aa13.94□□□□□ -0.18
TCOF1-214ENST00000515035 SCN3BQ9NY72 215 aa13.94□□□□□ -0.18
TCOF1-214ENST00000515035 HOXC10Q9NYD6 342 aa13.94□□□□□ -0.18
TCOF1-214ENST00000515035 LMCD1Q9NZU5 365 aa13.94□□□□□ -0.18
TCOF1-214ENST00000515035 XPO7Q9UIA9 1087 aaKnown RBP13.94□□□□□ -0.18
TCOF1-214ENST00000515035 STRNO43815 780 aa13.93□□□□□ -0.18
TCOF1-214ENST00000515035 DGKIO75912 1065 aa13.93□□□□□ -0.18
TCOF1-214ENST00000515035 DLGAP3O95886 979 aa13.93□□□□□ -0.18
TCOF1-214ENST00000515035 PRDX5P30044 214 aa13.93□□□□□ -0.18
TCOF1-214ENST00000515035 SSTR3P32745 418 aaPredicted RBP13.93□□□□□ -0.18
TCOF1-214ENST00000515035 SOX11P35716 441 aa13.93□□□□□ -0.18
TCOF1-214ENST00000515035 GPC3P51654 580 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms