RNA–Protein interactions for RNA: ENST00000513341.5

PDLIM5-218, Transcript of PDZ and LIM domain 5, humanhuman

TSL 3

Gene PDLIM5, Length 794 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-218ENST00000513341 CLEC4DQ8WXI8 215 aa4.53□□□□□ -1.68
PDLIM5-218ENST00000513341 DNAAF4Q8WXU2 420 aa4.53□□□□□ -1.68
PDLIM5-218ENST00000513341 TRIM43Q96BQ3 446 aaPredicted RBP4.53□□□□□ -1.68
PDLIM5-218ENST00000513341 ZNF764Q96H86 408 aaPredicted RBP4.53□□□□□ -1.68
PDLIM5-218ENST00000513341 CCSER2Q9H7U1 834 aa4.53□□□□□ -1.68
PDLIM5-218ENST00000513341 XPO5Q9HAV4 1204 aaKnown RBP eCLIP4.53□□□□□ -1.68
PDLIM5-218ENST00000513341 GINM1Q9NU53 330 aa4.53□□□□□ -1.68
PDLIM5-218ENST00000513341 MSRAQ9UJ68 235 aa4.53□□□□□ -1.68
PDLIM5-218ENST00000513341 EPB41L3Q9Y2J2 1087 aaPredicted RBP4.53□□□□□ -1.68
PDLIM5-218ENST00000513341 GIT1Q9Y2X7 761 aa4.53□□□□□ -1.68
PDLIM5-218ENST00000513341 NPFFR2Q9Y5X5 522 aa4.53□□□□□ -1.68
PDLIM5-218ENST00000513341 CACNA1AO00555 2505 aa4.53□□□□□ -1.68
PDLIM5-218ENST00000513341 FRMPD3Q5JV73 1810 aa4.52□□□□□ -1.69
PDLIM5-218ENST00000513341 INO80B-WBP1J3KQ70 363 aa4.52□□□□□ -1.69
PDLIM5-218ENST00000513341 ARHGAP6O43182 974 aa4.52□□□□□ -1.69
PDLIM5-218ENST00000513341 STRNO43815 780 aa4.52□□□□□ -1.69
PDLIM5-218ENST00000513341 RHOBTB3O94955 611 aa4.52□□□□□ -1.69
PDLIM5-218ENST00000513341 CLTBP09497 229 aa4.52□□□□□ -1.69
PDLIM5-218ENST00000513341 CNGA1P29973 690 aa4.52□□□□□ -1.69
PDLIM5-218ENST00000513341 ZEB1P37275 1124 aaPredicted RBP4.52□□□□□ -1.69
PDLIM5-218ENST00000513341 ETV4P43268 484 aa4.52□□□□□ -1.69
PDLIM5-218ENST00000513341 RGS3P49796 1198 aa4.52□□□□□ -1.69
PDLIM5-218ENST00000513341 BACE1P56817 501 aa4.52□□□□□ -1.69
PDLIM5-218ENST00000513341 HERVK_113P62684 666 aa4.52□□□□□ -1.69
PDLIM5-218ENST00000513341 IRX3P78415 501 aaPredicted RBP4.52□□□□□ -1.69
PDLIM5-218ENST00000513341 MRPS21P82921 87 aaKnown RBP4.52□□□□□ -1.69
PDLIM5-218ENST00000513341 PFKPQ01813 784 aa4.52□□□□□ -1.69
PDLIM5-218ENST00000513341 CHAF1AQ13111 956 aaPredicted RBP4.52□□□□□ -1.69
PDLIM5-218ENST00000513341 RAB30Q15771 203 aa4.52□□□□□ -1.69
PDLIM5-218ENST00000513341 CCL14Q16627 93 aa4.52□□□□□ -1.69
PDLIM5-218ENST00000513341 PAN2Q504Q3 1202 aaKnown RBP4.52□□□□□ -1.69
PDLIM5-218ENST00000513341 PHF19Q5T6S3 580 aa4.52□□□□□ -1.69
PDLIM5-218ENST00000513341 CD276Q5ZPR3 534 aa4.52□□□□□ -1.69
PDLIM5-218ENST00000513341 LAIR1Q6GTX8 287 aa4.52□□□□□ -1.69
PDLIM5-218ENST00000513341 MFSD5Q6N075 450 aa4.52□□□□□ -1.69
PDLIM5-218ENST00000513341 VHLLQ6RSH7 139 aa4.52□□□□□ -1.69
PDLIM5-218ENST00000513341 C8orf58Q8NAV2 365 aa4.52□□□□□ -1.69
PDLIM5-218ENST00000513341 CFHR4Q92496 578 aa4.52□□□□□ -1.69
PDLIM5-218ENST00000513341 INO80BQ9C086 356 aaPredicted RBP4.52□□□□□ -1.69
PDLIM5-218ENST00000513341 PRDM12Q9H4Q4 367 aa4.52□□□□□ -1.69
PDLIM5-218ENST00000513341 SLC28A3Q9HAS3 691 aa4.52□□□□□ -1.69
PDLIM5-218ENST00000513341 PLA2G3Q9NZ20 509 aa4.52□□□□□ -1.69
PDLIM5-218ENST00000513341 RABGAP1Q9Y3P9 1069 aa4.52□□□□□ -1.69
PDLIM5-218ENST00000513341 NR2E1Q9Y466 385 aa4.52□□□□□ -1.69
PDLIM5-218ENST00000513341 NUB1Q9Y5A7 615 aa4.52□□□□□ -1.69
PDLIM5-218ENST00000513341 PCDHA2Q9Y5H9 948 aa4.52□□□□□ -1.69
PDLIM5-218ENST00000513341 DOCK1Q14185 1865 aa4.52□□□□□ -1.69
PDLIM5-218ENST00000513341 PLXNA1Q9UIW2 1896 aa4.52□□□□□ -1.69
PDLIM5-218ENST00000513341 SALL1Q9NSC2 1324 aa4.51□□□□□ -1.69
PDLIM5-218ENST00000513341 LOC285556D6RIA3 1793 aa4.51□□□□□ -1.69
PDLIM5-218ENST00000513341 SEPT4O43236 478 aa4.51□□□□□ -1.69
PDLIM5-218ENST00000513341 TIMP1P01033 207 aa4.51□□□□□ -1.69
PDLIM5-218ENST00000513341 ASNSP08243 561 aa4.51□□□□□ -1.69
PDLIM5-218ENST00000513341 IFIT1P09914 478 aaKnown RBP4.51□□□□□ -1.69
PDLIM5-218ENST00000513341 ALADP13716 330 aa4.51□□□□□ -1.69
PDLIM5-218ENST00000513341 SLC5A1P13866 664 aa4.51□□□□□ -1.69
PDLIM5-218ENST00000513341 ITGB6P18564 788 aa4.51□□□□□ -1.69
PDLIM5-218ENST00000513341 PROZP22891 400 aa4.51□□□□□ -1.69
PDLIM5-218ENST00000513341 ADCYAP1R1P41586 468 aa4.51□□□□□ -1.69
PDLIM5-218ENST00000513341 HMGCS2P54868 508 aa4.51□□□□□ -1.69
PDLIM5-218ENST00000513341 HHEXQ03014 270 aa4.51□□□□□ -1.69
PDLIM5-218ENST00000513341 PPIGQ13427 754 aaKnown RBP eCLIP4.51□□□□□ -1.69
PDLIM5-218ENST00000513341 RALBP1Q15311 655 aa4.51□□□□□ -1.69
PDLIM5-218ENST00000513341 TRIM60Q495X7 471 aa4.51□□□□□ -1.69
PDLIM5-218ENST00000513341 ZNF394Q53GI3 561 aa4.51□□□□□ -1.69
PDLIM5-218ENST00000513341 GJC2Q5T442 439 aaPredicted RBP4.51□□□□□ -1.69
PDLIM5-218ENST00000513341 CCDC81Q6ZN84 652 aa4.51□□□□□ -1.69
PDLIM5-218ENST00000513341 CCDC129Q6ZRS4 1044 aa4.51□□□□□ -1.69
PDLIM5-218ENST00000513341 ANKRD33Q7Z3H0 272 aa4.51□□□□□ -1.69
PDLIM5-218ENST00000513341 RPUSD2Q8IZ73 545 aaKnown RBP4.51□□□□□ -1.69
PDLIM5-218ENST00000513341 ZGPATQ8N5A5 531 aaKnown RBP4.51□□□□□ -1.69
PDLIM5-218ENST00000513341 SLC44A5Q8NCS7 719 aa4.51□□□□□ -1.69
PDLIM5-218ENST00000513341 BUD13Q9BRD0 619 aaKnown RBP eCLIP4.51□□□□□ -1.699e-7■□□□□ 10.7
PDLIM5-218ENST00000513341 MTIF3Q9H2K0 278 aaKnown RBP4.51□□□□□ -1.69
PDLIM5-218ENST00000513341 TXNRD2Q9NNW7 524 aa4.51□□□□□ -1.69
PDLIM5-218ENST00000513341 GNL3LQ9NVN8 582 aaKnown RBP4.51□□□□□ -1.69
PDLIM5-218ENST00000513341 SLC5A4Q9NY91 659 aa4.51□□□□□ -1.69
PDLIM5-218ENST00000513341 TMOD4Q9NZQ9 345 aa4.51□□□□□ -1.69
PDLIM5-218ENST00000513341 NRBP1Q9UHY1 535 aa4.51□□□□□ -1.69
PDLIM5-218ENST00000513341 HERC5Q9UII4 1024 aaKnown RBP4.51□□□□□ -1.69
PDLIM5-218ENST00000513341 REXO2Q9Y3B8 237 aaKnown RBP4.51□□□□□ -1.69
PDLIM5-218ENST00000513341 DOCK2Q92608 1830 aa4.51□□□□□ -1.69
PDLIM5-218ENST00000513341 ZNF521Q96K83 1311 aa4.5□□□□□ -1.69
PDLIM5-218ENST00000513341 DDTLA6NHG4 134 aaPredicted RBP4.5□□□□□ -1.69
PDLIM5-218ENST00000513341 GRM8O00222 908 aa4.5□□□□□ -1.69
PDLIM5-218ENST00000513341 SLC27A2O14975 620 aa4.5□□□□□ -1.69
PDLIM5-218ENST00000513341 LMNAP02545 664 aaKnown RBP4.5□□□□□ -1.69
PDLIM5-218ENST00000513341 CYBAP13498 195 aa4.5□□□□□ -1.69
PDLIM5-218ENST00000513341 FGFR2P21802 821 aa4.5□□□□□ -1.69
PDLIM5-218ENST00000513341 ITGB8P26012 769 aa4.5□□□□□ -1.69
PDLIM5-218ENST00000513341 MSX2P35548 267 aaPredicted RBP4.5□□□□□ -1.69
PDLIM5-218ENST00000513341 GLRBP48167 497 aa4.5□□□□□ -1.69
PDLIM5-218ENST00000513341 RACK1P63244 317 aaKnown RBP4.5□□□□□ -1.69
PDLIM5-218ENST00000513341 NHLH1Q02575 133 aa4.5□□□□□ -1.69
PDLIM5-218ENST00000513341 GRB14Q14449 540 aa4.5□□□□□ -1.69
PDLIM5-218ENST00000513341 NCAPHQ15003 741 aa4.5□□□□□ -1.69
PDLIM5-218ENST00000513341 LRRC41Q15345 812 aa4.5□□□□□ -1.69
PDLIM5-218ENST00000513341 TMEM240Q5SV17 173 aa4.5□□□□□ -1.69
PDLIM5-218ENST00000513341 BEND3Q5T5X7 828 aa4.5□□□□□ -1.69
PDLIM5-218ENST00000513341 PSRC1Q6PGN9 363 aaPredicted RBP4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms