RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 FAM171A2A8MVW0 826 aa4.03□□□□□ -1.76
NUP54-208ENST00000508604 GCOM1H8Y6P7 765 aaPredicted RBP4.03□□□□□ -1.76
NUP54-208ENST00000508604 KIAA0391O15091 583 aaKnown RBP4.03□□□□□ -1.76
NUP54-208ENST00000508604 RPS7P62081 194 aaKnown RBP4.03□□□□□ -1.76
NUP54-208ENST00000508604 PTPRRQ15256 657 aa4.03□□□□□ -1.76
NUP54-208ENST00000508604 DHCR24Q15392 516 aa4.03□□□□□ -1.76
NUP54-208ENST00000508604 PREPLQ4J6C6 727 aaPredicted RBP4.03□□□□□ -1.76
NUP54-208ENST00000508604 MTX3Q5HYI7 312 aa4.03□□□□□ -1.76
NUP54-208ENST00000508604 SUMO4Q6EEV6 95 aa4.03□□□□□ -1.76
NUP54-208ENST00000508604 AMIGO2Q86SJ2 522 aa4.03□□□□□ -1.76
NUP54-208ENST00000508604 CCHCR1Q8TD31 782 aa4.03□□□□□ -1.76
NUP54-208ENST00000508604 HAPLN3Q96S86 360 aa4.03□□□□□ -1.76
NUP54-208ENST00000508604 MYOCQ99972 504 aa4.03□□□□□ -1.76
NUP54-208ENST00000508604 MANSC1Q9H8J5 431 aa4.03□□□□□ -1.76
NUP54-208ENST00000508604 NRIP3Q9NQ35 241 aa4.03□□□□□ -1.76
NUP54-208ENST00000508604 RUVBL1Q9Y265 456 aaKnown RBP4.03□□□□□ -1.76
NUP54-208ENST00000508604 PRAMEF33A0A0G2JMD5 474 aa4.03□□□□□ -1.76
NUP54-208ENST00000508604 A0A1W2PS29 197 aa4.03□□□□□ -1.76
NUP54-208ENST00000508604 PROM1O43490 865 aa4.03□□□□□ -1.76
NUP54-208ENST00000508604 PRAMEF10O60809 474 aa4.03□□□□□ -1.76
NUP54-208ENST00000508604 GSPT1P15170 499 aaKnown RBP4.03□□□□□ -1.76
NUP54-208ENST00000508604 BPIP17213 487 aa4.03□□□□□ -1.76
NUP54-208ENST00000508604 FPR1P21462 350 aa4.03□□□□□ -1.76
NUP54-208ENST00000508604 ZNF844Q08AG5 666 aa4.03□□□□□ -1.76
NUP54-208ENST00000508604 NPM2Q86SE8 214 aaKnown RBP4.03□□□□□ -1.76
NUP54-208ENST00000508604 VGLL2Q8N8G2 317 aa4.03□□□□□ -1.76
NUP54-208ENST00000508604 CLRN3Q8NCR9 226 aa4.03□□□□□ -1.76
NUP54-208ENST00000508604 DPF1Q92782 380 aa4.03□□□□□ -1.76
NUP54-208ENST00000508604 FCRL4Q96PJ5 515 aa4.03□□□□□ -1.76
NUP54-208ENST00000508604 SCOCQ9UIL1 159 aa4.03□□□□□ -1.76
NUP54-208ENST00000508604 MAPRE3Q9UPY8 281 aa4.03□□□□□ -1.76
NUP54-208ENST00000508604 TCRBV7S2A1N4TA0A589 114 aa4.02□□□□□ -1.77
NUP54-208ENST00000508604 WIPF3A6NGB9 483 aa4.02□□□□□ -1.77
NUP54-208ENST00000508604 WNT10BO00744 389 aa4.02□□□□□ -1.77
NUP54-208ENST00000508604 CHRM2P08172 466 aa4.02□□□□□ -1.77
NUP54-208ENST00000508604 KCNA2P16389 499 aa4.02□□□□□ -1.77
NUP54-208ENST00000508604 ITPKBP27987 946 aa4.02□□□□□ -1.77
NUP54-208ENST00000508604 SLC5A3P53794 718 aa4.02□□□□□ -1.77
NUP54-208ENST00000508604 MALLQ13021 153 aa4.02□□□□□ -1.77
NUP54-208ENST00000508604 EIF2B5Q13144 721 aaKnown RBP4.02□□□□□ -1.77
NUP54-208ENST00000508604 DALRD3Q5D0E6 543 aaKnown RBP4.02□□□□□ -1.77
NUP54-208ENST00000508604 TAF7LQ5H9L4 462 aa4.02□□□□□ -1.77
NUP54-208ENST00000508604 TGFBRAP1Q8WUH2 860 aa4.02□□□□□ -1.77
NUP54-208ENST00000508604 DMRT3Q9NQL9 472 aa4.02□□□□□ -1.77
NUP54-208ENST00000508604 APOBEC2Q9Y235 224 aaKnown RBP4.02□□□□□ -1.77
NUP54-208ENST00000508604 PDE8AO60658 829 aa4.01□□□□□ -1.77
NUP54-208ENST00000508604 HAUS5O94927 633 aa4.01□□□□□ -1.77
NUP54-208ENST00000508604 IGKV2-30P06310 120 aa4.01□□□□□ -1.77
NUP54-208ENST00000508604 PCSK1P29120 753 aa4.01□□□□□ -1.77
NUP54-208ENST00000508604 MCAMP43121 646 aa4.01□□□□□ -1.77
NUP54-208ENST00000508604 DDX46Q7L014 1031 aaKnown RBP4.01□□□□□ -1.77
NUP54-208ENST00000508604 B3GALNT2Q8NCR0 500 aa4.01□□□□□ -1.77
NUP54-208ENST00000508604 DDX55Q8NHQ9 600 aaKnown RBP eCLIP4.01□□□□□ -1.77
NUP54-208ENST00000508604 SLC30A5Q8TAD4 765 aa4.01□□□□□ -1.77
NUP54-208ENST00000508604 HOXB13Q92826 284 aaPredicted RBP4.01□□□□□ -1.77
NUP54-208ENST00000508604 ZBTB9Q96C00 473 aa4.01□□□□□ -1.77
NUP54-208ENST00000508604 KRTAP1-5Q9BYS1 174 aa4.01□□□□□ -1.77
NUP54-208ENST00000508604 SEMA4CQ9C0C4 833 aa4.01□□□□□ -1.77
NUP54-208ENST00000508604 PADI4Q9UM07 663 aa4.01□□□□□ -1.77
NUP54-208ENST00000508604 LINC01548A6NM66 108 aa4□□□□□ -1.77
NUP54-208ENST00000508604 TTLL1O95922 423 aa4□□□□□ -1.77
NUP54-208ENST00000508604 FCER1AP12319 257 aa4□□□□□ -1.77
NUP54-208ENST00000508604 MYCLP1P12525 358 aaPredicted RBP4□□□□□ -1.77
NUP54-208ENST00000508604 DDCP20711 480 aa4□□□□□ -1.77
NUP54-208ENST00000508604 KELP23276 732 aa4□□□□□ -1.77
NUP54-208ENST00000508604 NXPH1P58417 271 aa4□□□□□ -1.77
NUP54-208ENST00000508604 TUBA4AP68366 448 aa4□□□□□ -1.77
NUP54-208ENST00000508604 PPP3CAQ08209 521 aa4□□□□□ -1.77
NUP54-208ENST00000508604 SLFN5Q08AF3 891 aa4□□□□□ -1.77
NUP54-208ENST00000508604 MGAT2Q10469 447 aa4□□□□□ -1.77
NUP54-208ENST00000508604 FAPQ12884 760 aa4□□□□□ -1.77
NUP54-208ENST00000508604 TOR2AQ5JU69 321 aa4□□□□□ -1.77
NUP54-208ENST00000508604 TSHZ1Q6ZSZ6 1077 aa4□□□□□ -1.77
NUP54-208ENST00000508604 Q8NA96 180 aa4□□□□□ -1.77
NUP54-208ENST00000508604 SEMA6DQ8NFY4 1073 aa4□□□□□ -1.77
NUP54-208ENST00000508604 RPL36ALQ969Q0 106 aaKnown RBP4□□□□□ -1.77
NUP54-208ENST00000508604 C11orf54Q9H0W9 315 aaPredicted RBP4□□□□□ -1.77
NUP54-208ENST00000508604 ST3GAL5Q9UNP4 418 aa4□□□□□ -1.77
NUP54-208ENST00000508604 AOX1Q06278 1338 aa4□□□□□ -1.77
NUP54-208ENST00000508604 LINC00473A8K010 186 aa4□□□□□ -1.77
NUP54-208ENST00000508604 ADM5C9JUS6 153 aa4□□□□□ -1.77
NUP54-208ENST00000508604 NEMP1O14524 444 aa4□□□□□ -1.77
NUP54-208ENST00000508604 PRR35P0CG20 571 aa4□□□□□ -1.77
NUP54-208ENST00000508604 CCT4P50991 539 aaKnown RBP4□□□□□ -1.77
NUP54-208ENST00000508604 ITIH3Q06033 890 aa4□□□□□ -1.77
NUP54-208ENST00000508604 MTM1Q13496 603 aa4□□□□□ -1.77
NUP54-208ENST00000508604 GPR162Q16538 588 aa4□□□□□ -1.77
NUP54-208ENST00000508604 TXNRD1Q16881 649 aa4□□□□□ -1.77
NUP54-208ENST00000508604 DACT2Q5SW24 774 aa4□□□□□ -1.77
NUP54-208ENST00000508604 RASAL3Q86YV0 1011 aa4□□□□□ -1.77
NUP54-208ENST00000508604 LPIN2Q92539 896 aa4□□□□□ -1.77
NUP54-208ENST00000508604 SNX19Q92543 992 aa4□□□□□ -1.77
NUP54-208ENST00000508604 DNM3Q9UQ16 869 aa4□□□□□ -1.77
NUP54-208ENST00000508604 CDYLQ9Y232 598 aa4□□□□□ -1.77
NUP54-208ENST00000508604 TBC1D30Q9Y2I9 924 aa4□□□□□ -1.77
NUP54-208ENST00000508604 MYBBP1AQ9BQG0 1328 aaKnown RBP3.99□□□□□ -1.77
NUP54-208ENST00000508604 TOR1BO14657 336 aa3.99□□□□□ -1.77
NUP54-208ENST00000508604 URI1O94763 535 aaPredicted RBP3.99□□□□□ -1.77
NUP54-208ENST00000508604 MTHFD1P11586 935 aaKnown RBP3.99□□□□□ -1.77
NUP54-208ENST00000508604 SCAND1P57086 179 aa3.99□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms