RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 SLITRK6Q9H5Y7 841 aa22.96■■□□□ 1.27
SQSTM1-210ENST00000506042 FBXL5Q9UKA1 691 aa22.96■■□□□ 1.27
SQSTM1-210ENST00000506042 PRR5-ARHGAP8B1AHC4 643 aa22.95■■□□□ 1.26
SQSTM1-210ENST00000506042 FGF19O95750 216 aa22.95■■□□□ 1.26
SQSTM1-210ENST00000506042 EDN1P05305 212 aa22.95■■□□□ 1.26
SQSTM1-210ENST00000506042 PSMC3P17980 439 aa22.95■■□□□ 1.26
SQSTM1-210ENST00000506042 U2AF2P26368 475 aaKnown RBP eCLIP22.95■■□□□ 1.26
SQSTM1-210ENST00000506042 ARHGAP8P85298 464 aa22.95■■□□□ 1.26
SQSTM1-210ENST00000506042 YWHAHQ04917 246 aaPredicted RBP22.95■■□□□ 1.26
SQSTM1-210ENST00000506042 RILPL1Q5EBL4 403 aa22.95■■□□□ 1.26
SQSTM1-210ENST00000506042 CEP120Q8N960 986 aa22.95■■□□□ 1.26
SQSTM1-210ENST00000506042 C3orf58Q8NDZ4 430 aa22.95■■□□□ 1.26
SQSTM1-210ENST00000506042 PATJQ8NI35 1801 aa22.95■■□□□ 1.26
SQSTM1-210ENST00000506042 CSGALNACT1Q8TDX6 532 aa22.95■■□□□ 1.26
SQSTM1-210ENST00000506042 SMARCD2Q92925 531 aa22.95■■□□□ 1.26
SQSTM1-210ENST00000506042 NTPCRQ9BSD7 190 aaKnown RBP22.95■■□□□ 1.26
SQSTM1-210ENST00000506042 PTPRHQ9HD43 1115 aa22.95■■□□□ 1.26
SQSTM1-210ENST00000506042 TRPV5Q9NQA5 729 aa22.95■■□□□ 1.26
SQSTM1-210ENST00000506042 HEBP1Q9NRV9 189 aa22.95■■□□□ 1.26
SQSTM1-210ENST00000506042 PCDHB8Q9UN66 801 aa22.95■■□□□ 1.26
SQSTM1-210ENST00000506042 E9PMD0 336 aa22.94■■□□□ 1.26
SQSTM1-210ENST00000506042 ZNF263O14978 683 aa22.94■■□□□ 1.26
SQSTM1-210ENST00000506042 CEBPBP17676 345 aa22.94■■□□□ 1.26
SQSTM1-210ENST00000506042 LMNB2Q03252 620 aa22.94■■□□□ 1.26
SQSTM1-210ENST00000506042 PPP2R3AQ06190 1150 aa22.94■■□□□ 1.26
SQSTM1-210ENST00000506042 ZRSR1Q15695 479 aaKnown RBP22.94■■□□□ 1.26
SQSTM1-210ENST00000506042 RINT1Q6NUQ1 792 aa22.94■■□□□ 1.26
SQSTM1-210ENST00000506042 FAM200AQ8TCP9 573 aa22.94■■□□□ 1.26
SQSTM1-210ENST00000506042 RMDN1Q96DB5 314 aa22.94■■□□□ 1.26
SQSTM1-210ENST00000506042 CXCL16Q9H2A7 254 aa22.94■■□□□ 1.26
SQSTM1-210ENST00000506042 TRIP11Q15643 1979 aa22.94■■□□□ 1.26
SQSTM1-210ENST00000506042 SLC16A4O15374 487 aa22.93■■□□□ 1.26
SQSTM1-210ENST00000506042 LRRN2O75325 713 aa22.93■■□□□ 1.26
SQSTM1-210ENST00000506042 CLTAP09496 248 aa22.93■■□□□ 1.26
SQSTM1-210ENST00000506042 PLS3P13797 630 aa22.93■■□□□ 1.26
SQSTM1-210ENST00000506042 PROZP22891 400 aa22.93■■□□□ 1.26
SQSTM1-210ENST00000506042 TARSP26639 723 aaKnown RBP22.93■■□□□ 1.26
SQSTM1-210ENST00000506042 ALDH1A3P47895 512 aa22.93■■□□□ 1.26
SQSTM1-210ENST00000506042 CCR3P51677 355 aa22.93■■□□□ 1.26
SQSTM1-210ENST00000506042 EPHB3P54753 998 aa22.93■■□□□ 1.26
SQSTM1-210ENST00000506042 SOX4Q06945 474 aaPredicted RBP22.93■■□□□ 1.26
SQSTM1-210ENST00000506042 SLC5A9Q2M3M2 681 aa22.93■■□□□ 1.26
SQSTM1-210ENST00000506042 TANGO2Q6ICL3 276 aa22.93■■□□□ 1.26
SQSTM1-210ENST00000506042 DDX12PQ92771 950 aa22.93■■□□□ 1.26
SQSTM1-210ENST00000506042 TBC1D32Q96NH3 1257 aa22.93■■□□□ 1.26
SQSTM1-210ENST00000506042 ASB16Q96NS5 453 aa22.93■■□□□ 1.26
SQSTM1-210ENST00000506042 POLD4Q9HCU8 107 aa22.93■■□□□ 1.26
SQSTM1-210ENST00000506042 UBQLN1Q9UMX0 589 aaKnown RBP22.93■■□□□ 1.26
SQSTM1-210ENST00000506042 OR6C75A6NL08 312 aa22.92■■□□□ 1.26
SQSTM1-210ENST00000506042 SLC26A4O43511 780 aa22.92■■□□□ 1.26
SQSTM1-210ENST00000506042 MYL4P12829 197 aa22.92■■□□□ 1.26
SQSTM1-210ENST00000506042 CD72P21854 359 aa22.92■■□□□ 1.26
SQSTM1-210ENST00000506042 TWF1Q12792 350 aa22.92■■□□□ 1.26
SQSTM1-210ENST00000506042 MRPL58Q14197 206 aaKnown RBP22.92■■□□□ 1.26
SQSTM1-210ENST00000506042 LRRC32Q14392 662 aa22.92■■□□□ 1.26
SQSTM1-210ENST00000506042 ECM1Q16610 540 aa22.92■■□□□ 1.26
SQSTM1-210ENST00000506042 MCTP1Q6DN14 999 aa22.92■■□□□ 1.26
SQSTM1-210ENST00000506042 C1orf186Q6ZWK4 172 aa22.92■■□□□ 1.26
SQSTM1-210ENST00000506042 HAUS6Q7Z4H7 955 aa22.92■■□□□ 1.26
SQSTM1-210ENST00000506042 C4orf32Q8N8J7 132 aa22.92■■□□□ 1.26
SQSTM1-210ENST00000506042 SUMF1Q8NBK3 374 aa22.92■■□□□ 1.26
SQSTM1-210ENST00000506042 ZBTB44Q8NCP5 570 aa22.92■■□□□ 1.26
SQSTM1-210ENST00000506042 FAM3CQ92520 227 aa22.92■■□□□ 1.26
SQSTM1-210ENST00000506042 EPC1Q9H2F5 836 aa22.92■■□□□ 1.26
SQSTM1-210ENST00000506042 NDRG2Q9UN36 371 aaKnown RBP22.92■■□□□ 1.26
SQSTM1-210ENST00000506042 SMG5Q9UPR3 1016 aaKnown RBP22.92■■□□□ 1.26
SQSTM1-210ENST00000506042 CYP3A5P20815 502 aa22.91■■□□□ 1.26
SQSTM1-210ENST00000506042 GDI1P31150 447 aa22.91■■□□□ 1.26
SQSTM1-210ENST00000506042 MLLT6P55198 1093 aaPredicted RBP22.91■■□□□ 1.26
SQSTM1-210ENST00000506042 ARHGAP15Q53QZ3 475 aa22.91■■□□□ 1.26
SQSTM1-210ENST00000506042 FAM78AQ5JUQ0 283 aa22.91■■□□□ 1.26
SQSTM1-210ENST00000506042 PRSS36Q5K4E3 855 aa22.91■■□□□ 1.26
SQSTM1-210ENST00000506042 ARMCX5Q6P1M9 558 aa22.91■■□□□ 1.26
SQSTM1-210ENST00000506042 DSTYKQ6XUX3 929 aa22.91■■□□□ 1.26
SQSTM1-210ENST00000506042 ZMAT2Q96NC0 199 aaKnown RBP22.91■■□□□ 1.26
SQSTM1-210ENST00000506042 RUSC1Q9BVN2 902 aa22.91■■□□□ 1.26
SQSTM1-210ENST00000506042 CDV3Q9UKY7 258 aaKnown RBP22.91■■□□□ 1.26
SQSTM1-210ENST00000506042 ASB3Q9Y575 518 aa22.91■■□□□ 1.26
SQSTM1-210ENST00000506042 PCDHB6Q9Y5E3 794 aa22.91■■□□□ 1.26
SQSTM1-210ENST00000506042 DOCK6Q96HP0 2047 aa22.91■■□□□ 1.26
SQSTM1-210ENST00000506042 DPYSL4O14531 572 aa22.9■■□□□ 1.26
SQSTM1-210ENST00000506042 LIG4P49917 911 aa22.9■■□□□ 1.26
SQSTM1-210ENST00000506042 MCL1Q07820 350 aa22.9■■□□□ 1.26
SQSTM1-210ENST00000506042 GRM2Q14416 872 aa22.9■■□□□ 1.26
SQSTM1-210ENST00000506042 CD300LGQ6UXG3 332 aa22.9■■□□□ 1.26
SQSTM1-210ENST00000506042 MAMSTRQ6ZN01 415 aa22.9■■□□□ 1.26
SQSTM1-210ENST00000506042 ITIH5Q86UX2 942 aa22.9■■□□□ 1.26
SQSTM1-210ENST00000506042 CD302Q8IX05 232 aa22.9■■□□□ 1.26
SQSTM1-210ENST00000506042 MAML2Q8IZL2 1156 aaPredicted RBP22.9■■□□□ 1.26
SQSTM1-210ENST00000506042 KIF12Q96FN5 646 aa22.9■■□□□ 1.26
SQSTM1-210ENST00000506042 CHRDQ9H2X0 955 aa22.9■■□□□ 1.26
SQSTM1-210ENST00000506042 PRMT8Q9NR22 394 aaPredicted RBP22.9■■□□□ 1.26
SQSTM1-210ENST00000506042 ODF2LQ9ULJ1 636 aa22.9■■□□□ 1.26
SQSTM1-210ENST00000506042 MTF2Q9Y483 593 aaPredicted RBP22.9■■□□□ 1.26
SQSTM1-210ENST00000506042 PIAS3Q9Y6X2 628 aa22.9■■□□□ 1.26
SQSTM1-210ENST00000506042 MYH11P35749 1972 aa22.9■■□□□ 1.26
SQSTM1-210ENST00000506042 SPTBN4Q9H254 2564 aa22.9■■□□□ 1.26
SQSTM1-210ENST00000506042 H3BQV1 296 aa22.89■■□□□ 1.25
SQSTM1-210ENST00000506042 FOXD2O60548 495 aaPredicted RBP22.89■■□□□ 1.25
SQSTM1-210ENST00000506042 ST3GAL1Q11201 340 aa22.89■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms