RNA–Protein interactions for RNA: ENST00000494623.1

CHMP3-209, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 2,724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-209ENST00000494623 PROSCO94903 275 aa11.94□□□□□ -0.5
CHMP3-209ENST00000494623 CST3P01034 146 aaPredicted RBP11.94□□□□□ -0.5
CHMP3-209ENST00000494623 CLTAP09496 248 aa11.94□□□□□ -0.5
CHMP3-209ENST00000494623 VPS41P49754 854 aa11.94□□□□□ -0.5
CHMP3-209ENST00000494623 IFT88Q13099 833 aa11.94□□□□□ -0.5
CHMP3-209ENST00000494623 NCOA4Q13772 614 aa11.94□□□□□ -0.5
CHMP3-209ENST00000494623 CAPSQ13938 189 aa11.94□□□□□ -0.5
CHMP3-209ENST00000494623 MMS22LQ6ZRQ5 1243 aa11.94□□□□□ -0.5
CHMP3-209ENST00000494623 MICALCLQ6ZW33 695 aa11.94□□□□□ -0.5
CHMP3-209ENST00000494623 EPS8L3Q8TE67 593 aaKnown RBP11.94□□□□□ -0.5
CHMP3-209ENST00000494623 PRPF31Q8WWY3 499 aaKnown RBP11.94□□□□□ -0.5
CHMP3-209ENST00000494623 DDX27Q96GQ7 796 aaKnown RBP11.94□□□□□ -0.5
CHMP3-209ENST00000494623 CCDC114Q96M63 670 aa11.94□□□□□ -0.5
CHMP3-209ENST00000494623 CGRRF1Q99675 332 aa11.94□□□□□ -0.5
CHMP3-209ENST00000494623 R3HDM2Q9Y2K5 976 aaKnown RBP11.94□□□□□ -0.5
CHMP3-209ENST00000494623 MYH9P35579 1960 aaKnown RBP11.93□□□□□ -0.5
CHMP3-209ENST00000494623 MEFVO15553 781 aaPredicted RBP11.93□□□□□ -0.5
CHMP3-209ENST00000494623 FARP2O94887 1054 aaPredicted RBP11.93□□□□□ -0.5
CHMP3-209ENST00000494623 PIGRP01833 764 aa11.93□□□□□ -0.5
CHMP3-209ENST00000494623 SRGAP2CP0DJJ0 459 aa11.93□□□□□ -0.5
CHMP3-209ENST00000494623 RALAP11233 206 aa11.93□□□□□ -0.5
CHMP3-209ENST00000494623 MARK3P27448 753 aa11.93□□□□□ -0.5
CHMP3-209ENST00000494623 TNFSF9P41273 254 aa11.93□□□□□ -0.5
CHMP3-209ENST00000494623 CDR1P51861 262 aa11.93□□□□□ -0.5
CHMP3-209ENST00000494623 TAS2R40P59535 323 aa11.93□□□□□ -0.5
CHMP3-209ENST00000494623 NOP14P78316 857 aaKnown RBP11.93□□□□□ -0.5
CHMP3-209ENST00000494623 MAMLD1Q13495 774 aa11.93□□□□□ -0.5
CHMP3-209ENST00000494623 QPCTQ16769 361 aa11.93□□□□□ -0.5
CHMP3-209ENST00000494623 C6orf118Q5T5N4 469 aa11.93□□□□□ -0.5
CHMP3-209ENST00000494623 DNAJC17Q9NVM6 304 aaKnown RBP11.93□□□□□ -0.5
CHMP3-209ENST00000494623 CNTNAP2Q9UHC6 1331 aa11.93□□□□□ -0.5
CHMP3-209ENST00000494623 ZNFX1Q9P2E3 1918 aaKnown RBP11.93□□□□□ -0.5
CHMP3-209ENST00000494623 SOWAHBA6NEL2 793 aa11.93□□□□□ -0.5
CHMP3-209ENST00000494623 TLR3O15455 904 aaKnown RBP11.93□□□□□ -0.5
CHMP3-209ENST00000494623 ADCY3O60266 1144 aa11.93□□□□□ -0.5
CHMP3-209ENST00000494623 NOMO3P69849 1222 aa11.93□□□□□ -0.5
CHMP3-209ENST00000494623 LY6KQ17RY6 165 aa11.93□□□□□ -0.5
CHMP3-209ENST00000494623 ZNF394Q53GI3 561 aa11.93□□□□□ -0.5
CHMP3-209ENST00000494623 CHADLQ6NUI6 762 aa11.93□□□□□ -0.5
CHMP3-209ENST00000494623 PACS2Q86VP3 889 aa11.93□□□□□ -0.5
CHMP3-209ENST00000494623 SPATS2Q86XZ4 545 aaKnown RBP11.93□□□□□ -0.5
CHMP3-209ENST00000494623 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.93□□□□□ -0.5
CHMP3-209ENST00000494623 PGM2Q96G03 612 aa11.93□□□□□ -0.5
CHMP3-209ENST00000494623 DDX23Q9BUQ8 820 aaKnown RBP11.93□□□□□ -0.5
CHMP3-209ENST00000494623 CCDC113Q9H0I3 377 aa11.93□□□□□ -0.5
CHMP3-209ENST00000494623 CNOT10Q9H9A5 744 aaKnown RBP11.93□□□□□ -0.5
CHMP3-209ENST00000494623 MRPL47Q9HD33 250 aaKnown RBP11.93□□□□□ -0.5
CHMP3-209ENST00000494623 GPRC5DQ9NZD1 345 aa11.93□□□□□ -0.5
CHMP3-209ENST00000494623 DDX20Q9UHI6 824 aaKnown RBP11.93□□□□□ -0.5
CHMP3-209ENST00000494623 ARID2Q68CP9 1835 aa11.92□□□□□ -0.5
CHMP3-209ENST00000494623 IGKV6D-21A0A0A0MT36 114 aa11.92□□□□□ -0.5
CHMP3-209ENST00000494623 SRRM3A6NNA2 597 aaPredicted RBP11.92□□□□□ -0.5
CHMP3-209ENST00000494623 RASGRF2O14827 1237 aa11.92□□□□□ -0.5
CHMP3-209ENST00000494623 ACSL3O95573 720 aa11.92□□□□□ -0.5
CHMP3-209ENST00000494623 CHN1P15882 459 aa11.92□□□□□ -0.5
CHMP3-209ENST00000494623 CD58P19256 250 aa11.92□□□□□ -0.5
CHMP3-209ENST00000494623 CHKAP35790 457 aa11.92□□□□□ -0.5
CHMP3-209ENST00000494623 TCF7P36402 384 aaPredicted RBP11.92□□□□□ -0.5
CHMP3-209ENST00000494623 ADCY8P40145 1251 aa11.92□□□□□ -0.5
CHMP3-209ENST00000494623 RFC5P40937 340 aa11.92□□□□□ -0.5
CHMP3-209ENST00000494623 ADCY2Q08462 1091 aa11.92□□□□□ -0.5
CHMP3-209ENST00000494623 VGLL4Q14135 290 aa11.92□□□□□ -0.5
CHMP3-209ENST00000494623 TTC31Q49AM3 519 aaPredicted RBP11.92□□□□□ -0.5
CHMP3-209ENST00000494623 ZFYVE27Q5T4F4 411 aa11.92□□□□□ -0.5
CHMP3-209ENST00000494623 LBX2Q6XYB7 198 aa11.92□□□□□ -0.5
CHMP3-209ENST00000494623 RHOT1Q8IXI2 618 aa11.92□□□□□ -0.5
CHMP3-209ENST00000494623 MAIP1Q8WWC4 291 aa11.92□□□□□ -0.5
CHMP3-209ENST00000494623 SCLT1Q96NL6 688 aa11.92□□□□□ -0.5
CHMP3-209ENST00000494623 PAGR1Q9BTK6 254 aa11.92□□□□□ -0.5
CHMP3-209ENST00000494623 DCLK3Q9C098 648 aa11.92□□□□□ -0.5
CHMP3-209ENST00000494623 TMEM134Q9H6X4 195 aa11.92□□□□□ -0.5
CHMP3-209ENST00000494623 TMEM51Q9NW97 253 aa11.92□□□□□ -0.5
CHMP3-209ENST00000494623 ADGRA2Q96PE1 1338 aa11.92□□□□□ -0.5
CHMP3-209ENST00000494623 ITIH2P19823 946 aa11.92□□□□□ -0.5
CHMP3-209ENST00000494623 TBXAS1P24557 533 aaPredicted RBP11.92□□□□□ -0.5
CHMP3-209ENST00000494623 TARBP2Q15633 366 aaKnown RBP11.92□□□□□ -0.5
CHMP3-209ENST00000494623 CCDC38Q502W7 563 aa11.92□□□□□ -0.5
CHMP3-209ENST00000494623 NOL9Q5SY16 702 aaKnown RBP11.92□□□□□ -0.5
CHMP3-209ENST00000494623 TRIM72Q6ZMU5 477 aa11.92□□□□□ -0.5
CHMP3-209ENST00000494623 GADL1Q6ZQY3 521 aa11.92□□□□□ -0.5
CHMP3-209ENST00000494623 CPLX4Q7Z7G2 160 aa11.92□□□□□ -0.5
CHMP3-209ENST00000494623 PIAS4Q8N2W9 510 aaPredicted RBP11.92□□□□□ -0.5
CHMP3-209ENST00000494623 ATL2Q8NHH9 583 aa11.92□□□□□ -0.5
CHMP3-209ENST00000494623 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.92□□□□□ -0.5
CHMP3-209ENST00000494623 ZNF606Q8WXB4 792 aa11.92□□□□□ -0.5
CHMP3-209ENST00000494623 ZNF668Q96K58 619 aaPredicted RBP11.92□□□□□ -0.5
CHMP3-209ENST00000494623 MTFR1LQ9H019 292 aa11.92□□□□□ -0.5
CHMP3-209ENST00000494623 CDC42EP4Q9H3Q1 356 aaKnown RBP11.92□□□□□ -0.5
CHMP3-209ENST00000494623 R3HDMLQ9H3Y0 253 aa11.92□□□□□ -0.5
CHMP3-209ENST00000494623 KLHL11Q9NVR0 708 aa11.92□□□□□ -0.5
CHMP3-209ENST00000494623 WHRNQ9P202 907 aa11.92□□□□□ -0.5
CHMP3-209ENST00000494623 TP73O15350 636 aa11.91□□□□□ -0.5
CHMP3-209ENST00000494623 ITGA8P53708 1063 aa11.91□□□□□ -0.5
CHMP3-209ENST00000494623 SF3A3Q12874 501 aaKnown RBP eCLIP11.91□□□□□ -0.5
CHMP3-209ENST00000494623 ATP13A4Q4VNC1 1196 aa11.91□□□□□ -0.5
CHMP3-209ENST00000494623 SH3D19Q5HYK7 790 aa11.91□□□□□ -0.5
CHMP3-209ENST00000494623 FAM160B1Q5W0V3 765 aa11.91□□□□□ -0.5
CHMP3-209ENST00000494623 SEPT1Q8WYJ6 367 aa11.91□□□□□ -0.5
CHMP3-209ENST00000494623 PWWP2AQ96N64 755 aa11.91□□□□□ -0.5
CHMP3-209ENST00000494623 XPO6Q96QU8 1125 aaKnown RBP11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms