RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 MEA1Q16626 185 aa17.21■□□□□ 0.35
CCDC88B-209ENST00000494080 NXNQ6DKJ4 435 aa17.21■□□□□ 0.35
CCDC88B-209ENST00000494080 WDR59Q6PJI9 974 aa17.21■□□□□ 0.35
CCDC88B-209ENST00000494080 C15orf52Q6ZUT6 534 aaKnown RBP17.21■□□□□ 0.35
CCDC88B-209ENST00000494080 PDIK1LQ8N165 341 aa17.21■□□□□ 0.35
CCDC88B-209ENST00000494080 SIX6OS1Q8N1H7 587 aa17.21■□□□□ 0.35
CCDC88B-209ENST00000494080 HSD3B7Q9H2F3 369 aa17.21■□□□□ 0.35
CCDC88B-209ENST00000494080 REXO2Q9Y3B8 237 aaKnown RBP17.21■□□□□ 0.35
CCDC88B-209ENST00000494080 ZBED1O96006 694 aa17.21■□□□□ 0.35
CCDC88B-209ENST00000494080 EFNA5P52803 228 aa17.21■□□□□ 0.35
CCDC88B-209ENST00000494080 SLC12A2P55011 1212 aa17.21■□□□□ 0.35
CCDC88B-209ENST00000494080 TMPRSS15P98073 1019 aa17.21■□□□□ 0.35
CCDC88B-209ENST00000494080 TRIM42Q8IWZ5 723 aa17.21■□□□□ 0.35
CCDC88B-209ENST00000494080 RBM41Q96IZ5 413 aaKnown RBP17.21■□□□□ 0.35
CCDC88B-209ENST00000494080 EML1O00423 815 aa17.21■□□□□ 0.35
CCDC88B-209ENST00000494080 ITGA4P13612 1032 aa17.21■□□□□ 0.35
CCDC88B-209ENST00000494080 PGM1P36871 562 aa17.21■□□□□ 0.35
CCDC88B-209ENST00000494080 PDE1BQ01064 536 aa17.21■□□□□ 0.35
CCDC88B-209ENST00000494080 CAV1Q03135 178 aa17.21■□□□□ 0.35
CCDC88B-209ENST00000494080 DNAJC3Q13217 504 aa17.21■□□□□ 0.35
CCDC88B-209ENST00000494080 NCOA4Q13772 614 aa17.21■□□□□ 0.35
CCDC88B-209ENST00000494080 TRMT10CQ7L0Y3 403 aaKnown RBP17.21■□□□□ 0.35
CCDC88B-209ENST00000494080 C4orf33Q8N1A6 199 aa17.21■□□□□ 0.35
CCDC88B-209ENST00000494080 TPCN2Q8NHX9 752 aa17.21■□□□□ 0.35
CCDC88B-209ENST00000494080 SNF8Q96H20 258 aa17.21■□□□□ 0.35
CCDC88B-209ENST00000494080 WNT8AQ9H1J5 351 aa17.21■□□□□ 0.35
CCDC88B-209ENST00000494080 NPHS2Q9NP85 383 aa17.21■□□□□ 0.35
CCDC88B-209ENST00000494080 TOPORSQ9NS56 1045 aaPredicted RBP17.21■□□□□ 0.35
CCDC88B-209ENST00000494080 PIK3R2O00459 728 aa17.21■□□□□ 0.34
CCDC88B-209ENST00000494080 TOM1L1O75674 476 aa17.21■□□□□ 0.34
CCDC88B-209ENST00000494080 PAPOLAP51003 745 aaKnown RBP17.21■□□□□ 0.34
CCDC88B-209ENST00000494080 Q4G0T1 1027 aa17.21■□□□□ 0.34
CCDC88B-209ENST00000494080 FASTKD5Q7L8L6 764 aaKnown RBP17.21■□□□□ 0.34
CCDC88B-209ENST00000494080 SYTL5Q8TDW5 730 aaPredicted RBP17.21■□□□□ 0.34
CCDC88B-209ENST00000494080 FZD1Q9UP38 647 aa17.21■□□□□ 0.34
CCDC88B-209ENST00000494080 TMEM150BA6NC51 233 aa17.2■□□□□ 0.34
CCDC88B-209ENST00000494080 F8VZ95 297 aa17.2■□□□□ 0.34
CCDC88B-209ENST00000494080 UBTFL6P0CB48 400 aaPredicted RBP17.2■□□□□ 0.34
CCDC88B-209ENST00000494080 LRRC36Q1X8D7 754 aa17.2■□□□□ 0.34
CCDC88B-209ENST00000494080 SHROOM1Q2M3G4 852 aaPredicted RBP17.2■□□□□ 0.34
CCDC88B-209ENST00000494080 TMCO4Q5TGY1 634 aa17.2■□□□□ 0.34
CCDC88B-209ENST00000494080 MEI1Q5TIA1 1274 aa17.2■□□□□ 0.34
CCDC88B-209ENST00000494080 TRABDQ9H4I3 376 aa17.2■□□□□ 0.34
CCDC88B-209ENST00000494080 ANKEF1Q9NU02 776 aa17.2■□□□□ 0.34
CCDC88B-209ENST00000494080 ALG6Q9Y672 507 aa17.2■□□□□ 0.34
CCDC88B-209ENST00000494080 MAFGO15525 162 aa17.2■□□□□ 0.34
CCDC88B-209ENST00000494080 HLA-DRAP01903 254 aa17.2■□□□□ 0.34
CCDC88B-209ENST00000494080 RHOT1Q8IXI2 618 aa17.2■□□□□ 0.34
CCDC88B-209ENST00000494080 MTMR9Q96QG7 549 aa17.2■□□□□ 0.34
CCDC88B-209ENST00000494080 UBN1Q9NPG3 1134 aa17.2■□□□□ 0.34
CCDC88B-209ENST00000494080 GDF3Q9NR23 364 aa17.2■□□□□ 0.34
CCDC88B-209ENST00000494080 TBX20Q9UMR3 447 aa17.2■□□□□ 0.34
CCDC88B-209ENST00000494080 SOX10P56693 466 aa17.2■□□□□ 0.34
CCDC88B-209ENST00000494080 AP2B1P63010 937 aa17.2■□□□□ 0.34
CCDC88B-209ENST00000494080 TNFAIP2Q03169 654 aa17.2■□□□□ 0.34
CCDC88B-209ENST00000494080 ITGB3BPQ13352 177 aaPredicted RBP17.2■□□□□ 0.34
CCDC88B-209ENST00000494080 SPDYE2Q495Y8 402 aa17.2■□□□□ 0.34
CCDC88B-209ENST00000494080 ZNF720Q7Z2F6 126 aa17.2■□□□□ 0.34
CCDC88B-209ENST00000494080 DNAAF3Q8N9W5 541 aa17.2■□□□□ 0.34
CCDC88B-209ENST00000494080 PDCD2LQ9BRP1 358 aa17.2■□□□□ 0.34
CCDC88B-209ENST00000494080 HAO1Q9UJM8 370 aa17.2■□□□□ 0.34
CCDC88B-209ENST00000494080 ABT1Q9ULW3 272 aaKnown RBP17.2■□□□□ 0.34
CCDC88B-209ENST00000494080 HNRNPCP07910 306 aaKnown RBP eCLIP17.2■□□□□ 0.34
CCDC88B-209ENST00000494080 CRY2Q49AN0 593 aa17.2■□□□□ 0.34
CCDC88B-209ENST00000494080 IZUMO3Q5VZ72 239 aa17.2■□□□□ 0.34
CCDC88B-209ENST00000494080 RGS9BPQ6ZS82 235 aa17.2■□□□□ 0.34
CCDC88B-209ENST00000494080 DNAJC8O75937 253 aaPredicted RBP17.19■□□□□ 0.34
CCDC88B-209ENST00000494080 GABPAQ06546 454 aa17.19■□□□□ 0.34
CCDC88B-209ENST00000494080 DSTYKQ6XUX3 929 aa17.19■□□□□ 0.34
CCDC88B-209ENST00000494080 SYN2Q92777 582 aaPredicted RBP17.19■□□□□ 0.34
CCDC88B-209ENST00000494080 NALCNQ8IZF0 1738 aa17.19■□□□□ 0.34
CCDC88B-209ENST00000494080 FAM47DPA6NHR8 397 aa17.19■□□□□ 0.34
CCDC88B-209ENST00000494080 PLSCR1O15162 318 aa17.19■□□□□ 0.34
CCDC88B-209ENST00000494080 AP1G2O75843 785 aa17.19■□□□□ 0.34
CCDC88B-209ENST00000494080 C2CD6Q53TS8 623 aa17.19■□□□□ 0.34
CCDC88B-209ENST00000494080 FAM102AQ5T9C2 384 aaPredicted RBP17.19■□□□□ 0.34
CCDC88B-209ENST00000494080 ABI1Q8IZP0 508 aa17.19■□□□□ 0.34
CCDC88B-209ENST00000494080 KIF12Q96FN5 646 aa17.19■□□□□ 0.34
CCDC88B-209ENST00000494080 OLFM3Q96PB7 478 aa17.19■□□□□ 0.34
CCDC88B-209ENST00000494080 POP1Q99575 1024 aaKnown RBP17.19■□□□□ 0.34
CCDC88B-209ENST00000494080 SH3GL2Q99962 352 aa17.19■□□□□ 0.34
CCDC88B-209ENST00000494080 PRCCQ92733 491 aaPredicted RBP17.19■□□□□ 0.34
CCDC88B-209ENST00000494080 HAS1Q92839 578 aa17.19■□□□□ 0.34
CCDC88B-209ENST00000494080 THAP2Q9H0W7 228 aa17.19■□□□□ 0.34
CCDC88B-209ENST00000494080 IGSF9BQ9UPX0 1349 aa17.18■□□□□ 0.34
CCDC88B-209ENST00000494080 ASB14A6NK59 587 aa17.18■□□□□ 0.34
CCDC88B-209ENST00000494080 KITP10721 976 aa17.18■□□□□ 0.34
CCDC88B-209ENST00000494080 NCF2P19878 526 aaPredicted RBP17.18■□□□□ 0.34
CCDC88B-209ENST00000494080 COMTP21964 271 aa17.18■□□□□ 0.34
CCDC88B-209ENST00000494080 ALDH5A1P51649 535 aaPredicted RBP17.18■□□□□ 0.34
CCDC88B-209ENST00000494080 TMEM62Q0P6H9 643 aa17.18■□□□□ 0.34
CCDC88B-209ENST00000494080 STAT4Q14765 748 aa17.18■□□□□ 0.34
CCDC88B-209ENST00000494080 SLC51AQ86UW1 340 aa17.18■□□□□ 0.34
CCDC88B-209ENST00000494080 RBBP8NLQ8NC74 664 aaPredicted RBP17.18■□□□□ 0.34
CCDC88B-209ENST00000494080 AGAP11Q8TF27 550 aa17.18■□□□□ 0.34
CCDC88B-209ENST00000494080 TATDN2Q93075 761 aa17.18■□□□□ 0.34
CCDC88B-209ENST00000494080 GOLGA8RI6L899 631 aa17.18■□□□□ 0.34
CCDC88B-209ENST00000494080 SHOX2O60902 331 aaPredicted RBP17.18■□□□□ 0.34
CCDC88B-209ENST00000494080 SLITRK3O94933 977 aa17.18■□□□□ 0.34
CCDC88B-209ENST00000494080 ARPP19P56211 112 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms