RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 MAPTP10636 758 aaKnown RBP13.54□□□□□ -0.24
CPSF3-204ENST00000489403 PLS3P13797 630 aa13.54□□□□□ -0.24
CPSF3-204ENST00000489403 MAGEA9P43362 315 aa13.54□□□□□ -0.24
CPSF3-204ENST00000489403 ATP2C1P98194 919 aaPredicted RBP13.54□□□□□ -0.24
CPSF3-204ENST00000489403 MCL1Q07820 350 aa13.54□□□□□ -0.24
CPSF3-204ENST00000489403 STRN3Q13033 797 aa13.54□□□□□ -0.24
CPSF3-204ENST00000489403 ZRSR1Q15695 479 aaKnown RBP13.54□□□□□ -0.24
CPSF3-204ENST00000489403 ZNF528Q3MIS6 628 aa13.54□□□□□ -0.24
CPSF3-204ENST00000489403 CTXN3Q4LDR2 81 aa13.54□□□□□ -0.24
CPSF3-204ENST00000489403 ZNF280DQ6N043 979 aa13.54□□□□□ -0.24
CPSF3-204ENST00000489403 PDZD4Q76G19 769 aaPredicted RBP13.54□□□□□ -0.24
CPSF3-204ENST00000489403 KIAA2013Q8IYS2 634 aa13.54□□□□□ -0.24
CPSF3-204ENST00000489403 SYT2Q8N9I0 419 aaPredicted RBP13.54□□□□□ -0.24
CPSF3-204ENST00000489403 SPIRE2Q8WWL2 714 aa13.54□□□□□ -0.24
CPSF3-204ENST00000489403 TBC1D32Q96NH3 1257 aa13.54□□□□□ -0.24
CPSF3-204ENST00000489403 HINFPQ9BQA5 517 aa13.54□□□□□ -0.24
CPSF3-204ENST00000489403 HAPLN2Q9GZV7 340 aa13.54□□□□□ -0.24
CPSF3-204ENST00000489403 HEBP1Q9NRV9 189 aa13.54□□□□□ -0.24
CPSF3-204ENST00000489403 FBXO4Q9UKT5 387 aa13.54□□□□□ -0.24
CPSF3-204ENST00000489403 DNAH14Q0VDD8 3507 aa13.54□□□□□ -0.24
CPSF3-204ENST00000489403 ZNF197O14709 1029 aa13.53□□□□□ -0.24
CPSF3-204ENST00000489403 KINO60870 393 aaKnown RBP13.53□□□□□ -0.24
CPSF3-204ENST00000489403 MICAL2O94851 1124 aa13.53□□□□□ -0.24
CPSF3-204ENST00000489403 CXCL8P10145 99 aa13.53□□□□□ -0.24
CPSF3-204ENST00000489403 SLC12A3P55017 1021 aa13.53□□□□□ -0.24
CPSF3-204ENST00000489403 CACNB1Q02641 598 aaPredicted RBP13.53□□□□□ -0.24
CPSF3-204ENST00000489403 ADCY1Q08828 1119 aa13.53□□□□□ -0.24
CPSF3-204ENST00000489403 TWF1Q12792 350 aa13.53□□□□□ -0.24
CPSF3-204ENST00000489403 GRM2Q14416 872 aa13.53□□□□□ -0.24
CPSF3-204ENST00000489403 RILPL1Q5EBL4 403 aa13.53□□□□□ -0.24
CPSF3-204ENST00000489403 FAM78AQ5JUQ0 283 aa13.53□□□□□ -0.24
CPSF3-204ENST00000489403 ZBTB41Q5SVQ8 909 aa13.53□□□□□ -0.24
CPSF3-204ENST00000489403 TPGS2Q68CL5 300 aa13.53□□□□□ -0.24
CPSF3-204ENST00000489403 ZPBP2Q6X784 338 aa13.53□□□□□ -0.24
CPSF3-204ENST00000489403 HS6ST3Q8IZP7 471 aa13.53□□□□□ -0.24
CPSF3-204ENST00000489403 DCLK2Q8N568 766 aa13.53□□□□□ -0.24
CPSF3-204ENST00000489403 SUMF1Q8NBK3 374 aa13.53□□□□□ -0.24
CPSF3-204ENST00000489403 RUBCNQ92622 972 aa13.53□□□□□ -0.24
CPSF3-204ENST00000489403 DNASE1L2Q92874 299 aa13.53□□□□□ -0.24
CPSF3-204ENST00000489403 CLDN23Q96B33 292 aa13.53□□□□□ -0.24
CPSF3-204ENST00000489403 RMDN1Q96DB5 314 aa13.53□□□□□ -0.24
CPSF3-204ENST00000489403 ASB16Q96NS5 453 aa13.53□□□□□ -0.24
CPSF3-204ENST00000489403 PLIN2Q99541 437 aa13.53□□□□□ -0.24
CPSF3-204ENST00000489403 AFF4Q9UHB7 1163 aaKnown RBP13.53□□□□□ -0.24
CPSF3-204ENST00000489403 PCDHB8Q9UN66 801 aa13.53□□□□□ -0.24
CPSF3-204ENST00000489403 FRYLO94915 3013 aa13.53□□□□□ -0.24
CPSF3-204ENST00000489403 TICRRQ7Z2Z1 1910 aa13.52□□□□□ -0.24
CPSF3-204ENST00000489403 GVINP1Q7Z2Y8 2422 aa13.52□□□□□ -0.24
CPSF3-204ENST00000489403 NPHP3-ACAD11A0A0J9YXS1 232 aa13.52□□□□□ -0.25
CPSF3-204ENST00000489403 CLDN3O15551 220 aa13.52□□□□□ -0.25
CPSF3-204ENST00000489403 MOSPD3O75425 235 aa13.52□□□□□ -0.25
CPSF3-204ENST00000489403 PLA2G4BP0C869 781 aa13.52□□□□□ -0.25
CPSF3-204ENST00000489403 CPB1P15086 417 aa13.52□□□□□ -0.25
CPSF3-204ENST00000489403 LRPAP1P30533 357 aa13.52□□□□□ -0.25
CPSF3-204ENST00000489403 TNFSF9P41273 254 aa13.52□□□□□ -0.25
CPSF3-204ENST00000489403 SMTNP53814 917 aa13.52□□□□□ -0.25
CPSF3-204ENST00000489403 NCKAP1LP55160 1127 aa13.52□□□□□ -0.25
CPSF3-204ENST00000489403 CSTF1Q05048 431 aaKnown RBP13.52□□□□□ -0.25
CPSF3-204ENST00000489403 SPAG1Q07617 926 aa13.52□□□□□ -0.25
CPSF3-204ENST00000489403 FZD5Q13467 585 aa13.52□□□□□ -0.25
CPSF3-204ENST00000489403 C8orf34Q49A92 452 aa13.52□□□□□ -0.25
CPSF3-204ENST00000489403 MCTP1Q6DN14 999 aa13.52□□□□□ -0.25
CPSF3-204ENST00000489403 ZNF852Q6ZMS4 543 aa13.52□□□□□ -0.25
CPSF3-204ENST00000489403 RNF19BQ6ZMZ0 732 aa13.52□□□□□ -0.25
CPSF3-204ENST00000489403 APPL2Q8NEU8 664 aa13.52□□□□□ -0.25
CPSF3-204ENST00000489403 ZFP14Q9HCL3 533 aa13.52□□□□□ -0.25
CPSF3-204ENST00000489403 KCND2Q9NZV8 630 aa13.52□□□□□ -0.25
CPSF3-204ENST00000489403 CEP72Q9P209 647 aa13.52□□□□□ -0.25
CPSF3-204ENST00000489403 SPTBN4Q9H254 2564 aa13.52□□□□□ -0.25
CPSF3-204ENST00000489403 NCANO14594 1321 aa13.51□□□□□ -0.25
CPSF3-204ENST00000489403 TTC26A0AVF1 554 aa13.51□□□□□ -0.25
CPSF3-204ENST00000489403 VWA3AA6NCI4 1184 aa13.51□□□□□ -0.25
CPSF3-204ENST00000489403 M0QZQ0 153 aa13.51□□□□□ -0.25
CPSF3-204ENST00000489403 SPTLC1O15269 473 aa13.51□□□□□ -0.25
CPSF3-204ENST00000489403 NCAM2O15394 837 aa13.51□□□□□ -0.25
CPSF3-204ENST00000489403 GJA1P17302 382 aa13.51□□□□□ -0.25
CPSF3-204ENST00000489403 MATR3P43243 847 aaKnown RBP eCLIP13.51□□□□□ -0.25
CPSF3-204ENST00000489403 RPS9P46781 194 aaKnown RBP13.51□□□□□ -0.25
CPSF3-204ENST00000489403 YWHAHQ04917 246 aaPredicted RBP13.51□□□□□ -0.25
CPSF3-204ENST00000489403 TMEM119Q4V9L6 283 aa13.51□□□□□ -0.25
CPSF3-204ENST00000489403 ARSHQ5FYA8 562 aa13.51□□□□□ -0.25
CPSF3-204ENST00000489403 CYP4A22Q5TCH4 519 aa13.51□□□□□ -0.25
CPSF3-204ENST00000489403 IQCEQ6IPM2 695 aa13.51□□□□□ -0.25
CPSF3-204ENST00000489403 VITQ6UXI7 678 aa13.51□□□□□ -0.25
CPSF3-204ENST00000489403 ELMOD1Q8N336 334 aa13.51□□□□□ -0.25
CPSF3-204ENST00000489403 KCTD17Q8N5Z5 321 aa13.51□□□□□ -0.25
CPSF3-204ENST00000489403 BEST2Q8NFU1 509 aa13.51□□□□□ -0.25
CPSF3-204ENST00000489403 KIF12Q96FN5 646 aa13.51□□□□□ -0.25
CPSF3-204ENST00000489403 ZNF512Q96ME7 567 aaPredicted RBP13.51□□□□□ -0.25
CPSF3-204ENST00000489403 ZSWIM3Q96MP5 696 aa13.51□□□□□ -0.25
CPSF3-204ENST00000489403 NELL2Q99435 816 aa13.51□□□□□ -0.25
CPSF3-204ENST00000489403 BRD9Q9H8M2 597 aa13.51□□□□□ -0.25
CPSF3-204ENST00000489403 PLEKHA5Q9HAU0 1116 aa13.51□□□□□ -0.25
CPSF3-204ENST00000489403 PRMT8Q9NR22 394 aaPredicted RBP13.51□□□□□ -0.25
CPSF3-204ENST00000489403 LARSQ9P2J5 1176 aaKnown RBP13.51□□□□□ -0.25
CPSF3-204ENST00000489403 KCNG1Q9UIX4 513 aa13.51□□□□□ -0.25
CPSF3-204ENST00000489403 YIPF1Q9Y548 306 aa13.51□□□□□ -0.25
CPSF3-204ENST00000489403 PCDHGA2Q9Y5H1 932 aa13.51□□□□□ -0.25
CPSF3-204ENST00000489403 TIMM13Q9Y5L4 95 aaPredicted RBP13.51□□□□□ -0.25
CPSF3-204ENST00000489403 VNN2O95498 520 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms