RNA–Protein interactions for RNA: ENST00000488727.5

CCM2-216, Transcript of CCM2 scaffold protein, humanhuman

TSL 5

Gene CCM2, Length 1,719 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-216ENST00000488727 THP07101 528 aa20.9■□□□□ 0.94
CCM2-216ENST00000488727 NFICP08651 508 aa20.9■□□□□ 0.94
CCM2-216ENST00000488727 RNASELQ05823 741 aaKnown RBP20.9■□□□□ 0.94
CCM2-216ENST00000488727 SOX4Q06945 474 aaPredicted RBP20.9■□□□□ 0.94
CCM2-216ENST00000488727 CYP24A1Q07973 514 aa20.9■□□□□ 0.94
CCM2-216ENST00000488727 DSC1Q08554 894 aa20.9■□□□□ 0.94
CCM2-216ENST00000488727 JADE1Q6IE81 842 aa20.9■□□□□ 0.94
CCM2-216ENST00000488727 PLEKHO2Q8TD55 490 aa20.9■□□□□ 0.94
CCM2-216ENST00000488727 FAM84AQ96KN4 292 aa20.9■□□□□ 0.94
CCM2-216ENST00000488727 MFSD14AQ96MC6 490 aa20.9■□□□□ 0.94
CCM2-216ENST00000488727 CACNG4Q9UBN1 327 aa20.9■□□□□ 0.94
CCM2-216ENST00000488727 CETN3O15182 167 aa20.89■□□□□ 0.93
CCM2-216ENST00000488727 IL18RAPO95256 599 aa20.89■□□□□ 0.93
CCM2-216ENST00000488727 TAP1Q03518 808 aa20.89■□□□□ 0.93
CCM2-216ENST00000488727 ZBTB6Q15916 424 aa20.89■□□□□ 0.93
CCM2-216ENST00000488727 CYP26C1Q6V0L0 522 aa20.89■□□□□ 0.93
CCM2-216ENST00000488727 CD302Q8IX05 232 aa20.89■□□□□ 0.93
CCM2-216ENST00000488727 EFCAB13Q8IY85 973 aa20.89■□□□□ 0.93
CCM2-216ENST00000488727 CLP1Q92989 425 aaKnown RBP20.89■□□□□ 0.93
CCM2-216ENST00000488727 C18orf25Q96B23 403 aaPredicted RBP20.89■□□□□ 0.93
CCM2-216ENST00000488727 KIF12Q96FN5 646 aa20.89■□□□□ 0.93
CCM2-216ENST00000488727 DESI2Q9BSY9 194 aa20.89■□□□□ 0.93
CCM2-216ENST00000488727 FRMD4BQ9Y2L6 1034 aa20.89■□□□□ 0.93
CCM2-216ENST00000488727 CDH23Q9H251 3354 aa20.88■□□□□ 0.93
CCM2-216ENST00000488727 PTPRJQ12913 1337 aa20.88■□□□□ 0.93
CCM2-216ENST00000488727 ZC3H11AO75152 810 aaKnown RBP eCLIP20.88■□□□□ 0.93
CCM2-216ENST00000488727 PBX3P40426 434 aa20.88■□□□□ 0.93
CCM2-216ENST00000488727 COLGALT2Q8IYK4 626 aa20.88■□□□□ 0.93
CCM2-216ENST00000488727 CNOT6LQ96LI5 555 aaKnown RBP20.88■□□□□ 0.93
CCM2-216ENST00000488727 TUBGCP2Q9BSJ2 902 aa20.88■□□□□ 0.93
CCM2-216ENST00000488727 GOLGA2P5Q9HBQ8 144 aa20.88■□□□□ 0.93
CCM2-216ENST00000488727 TUBGCP4Q9UGJ1 667 aa20.88■□□□□ 0.93
CCM2-216ENST00000488727 TULP1O00294 542 aaPredicted RBP20.87■□□□□ 0.93
CCM2-216ENST00000488727 MAPK13O15264 365 aa20.87■□□□□ 0.93
CCM2-216ENST00000488727 PSMC2P35998 433 aaKnown RBP20.87■□□□□ 0.93
CCM2-216ENST00000488727 TUSC3Q13454 348 aa20.87■□□□□ 0.93
CCM2-216ENST00000488727 PSMD6Q15008 389 aa20.87■□□□□ 0.93
CCM2-216ENST00000488727 FAM186BQ8IYM0 893 aa20.87■□□□□ 0.93
CCM2-216ENST00000488727 CCDC127Q96BQ5 260 aa20.87■□□□□ 0.93
CCM2-216ENST00000488727 TIFAQ96CG3 184 aa20.87■□□□□ 0.93
CCM2-216ENST00000488727 BORCS6Q96GS4 357 aa20.87■□□□□ 0.93
CCM2-216ENST00000488727 DNAJC7Q99615 494 aa20.87■□□□□ 0.93
CCM2-216ENST00000488727 PAAF1Q9BRP4 392 aa20.87■□□□□ 0.93
CCM2-216ENST00000488727 C17orf80Q9BSJ5 609 aa20.87■□□□□ 0.93
CCM2-216ENST00000488727 MKNK1Q9BUB5 465 aa20.87■□□□□ 0.93
CCM2-216ENST00000488727 CAPN11Q9UMQ6 739 aa20.87■□□□□ 0.93
CCM2-216ENST00000488727 RNF225M0QZC1 329 aaPredicted RBP20.87■□□□□ 0.93
CCM2-216ENST00000488727 CASQ1P31415 396 aa20.87■□□□□ 0.93
CCM2-216ENST00000488727 KRT9P35527 623 aa20.87■□□□□ 0.93
CCM2-216ENST00000488727 GNG11P61952 73 aa20.87■□□□□ 0.93
CCM2-216ENST00000488727 NAA30Q147X3 362 aaPredicted RBP20.87■□□□□ 0.93
CCM2-216ENST00000488727 TMEM132DQ14C87 1099 aa20.87■□□□□ 0.93
CCM2-216ENST00000488727 PPP2R2DQ66LE6 453 aa20.87■□□□□ 0.93
CCM2-216ENST00000488727 LMBRD2Q68DH5 695 aaPredicted RBP20.87■□□□□ 0.93
CCM2-216ENST00000488727 IQCDQ96DY2 449 aa20.87■□□□□ 0.93
CCM2-216ENST00000488727 CEP63Q96MT8 703 aa20.87■□□□□ 0.93
CCM2-216ENST00000488727 FAM193BQ96PV7 902 aaPredicted RBP20.87■□□□□ 0.93
CCM2-216ENST00000488727 POP1Q99575 1024 aaKnown RBP20.87■□□□□ 0.93
CCM2-216ENST00000488727 NUP58Q9BVL2 599 aa20.87■□□□□ 0.93
CCM2-216ENST00000488727 SLC28A3Q9HAS3 691 aa20.87■□□□□ 0.93
CCM2-216ENST00000488727 C2CD2Q9Y426 696 aa20.87■□□□□ 0.93
CCM2-216ENST00000488727 CASTOR2A6NHX0 329 aa20.86■□□□□ 0.93
CCM2-216ENST00000488727 SLC16A3O15427 465 aaKnown RBP20.86■□□□□ 0.93
CCM2-216ENST00000488727 FGFR1OPO95684 399 aaKnown RBP20.86■□□□□ 0.93
CCM2-216ENST00000488727 DLATP10515 647 aaKnown RBP20.86■□□□□ 0.93
CCM2-216ENST00000488727 SLC11A1P49279 550 aa20.86■□□□□ 0.93
CCM2-216ENST00000488727 GUCY2FP51841 1108 aa20.86■□□□□ 0.93
CCM2-216ENST00000488727 BCAR1P56945 870 aa20.86■□□□□ 0.93
CCM2-216ENST00000488727 DLG4P78352 724 aa20.86■□□□□ 0.93
CCM2-216ENST00000488727 SPOUT1Q5T280 376 aaKnown RBP20.86■□□□□ 0.93
CCM2-216ENST00000488727 CREBRFQ8IUR6 639 aa20.86■□□□□ 0.93
CCM2-216ENST00000488727 COLGALT1Q8NBJ5 622 aa20.86■□□□□ 0.93
CCM2-216ENST00000488727 PARD3BQ8TEW8 1205 aa20.86■□□□□ 0.93
CCM2-216ENST00000488727 RABGGTAQ92696 567 aa20.86■□□□□ 0.93
CCM2-216ENST00000488727 LRCH3Q96II8 777 aa20.86■□□□□ 0.93
CCM2-216ENST00000488727 TSPAN18Q96SJ8 248 aa20.86■□□□□ 0.93
CCM2-216ENST00000488727 TTYH3Q9C0H2 523 aa20.86■□□□□ 0.93
CCM2-216ENST00000488727 SLC38A7Q9NVC3 462 aa20.86■□□□□ 0.93
CCM2-216ENST00000488727 MTUS1Q9ULD2 1270 aa20.86■□□□□ 0.93
CCM2-216ENST00000488727 DERAQ9Y315 318 aa20.86■□□□□ 0.93
CCM2-216ENST00000488727 GALTP07902 379 aa20.85■□□□□ 0.93
CCM2-216ENST00000488727 EPB41P11171 864 aaKnown RBP20.85■□□□□ 0.93
CCM2-216ENST00000488727 LAG3P18627 525 aa20.85■□□□□ 0.93
CCM2-216ENST00000488727 FIGNQ5HY92 759 aa20.85■□□□□ 0.93
CCM2-216ENST00000488727 HABP4Q5JVS0 413 aaKnown RBP20.85■□□□□ 0.93
CCM2-216ENST00000488727 KCNT2Q6UVM3 1135 aa20.85■□□□□ 0.93
CCM2-216ENST00000488727 OR8K1Q8NGG5 319 aa20.85■□□□□ 0.93
CCM2-216ENST00000488727 ERGIC2Q96RQ1 377 aa20.85■□□□□ 0.93
CCM2-216ENST00000488727 WDR24Q96S15 920 aa20.85■□□□□ 0.93
CCM2-216ENST00000488727 UBQLN1Q9UMX0 589 aaKnown RBP20.85■□□□□ 0.93
CCM2-216ENST00000488727 LRRIQ3A6PVS8 624 aaPredicted RBP20.84■□□□□ 0.93
CCM2-216ENST00000488727 NT5C1B-RDH14C9J2C7 533 aa20.84■□□□□ 0.93
CCM2-216ENST00000488727 F8W810 466 aa20.84■□□□□ 0.93
CCM2-216ENST00000488727 PRKCSHP14314 528 aaPredicted RBP20.84■□□□□ 0.93
CCM2-216ENST00000488727 SURF1Q15526 300 aa20.84■□□□□ 0.93
CCM2-216ENST00000488727 MIIPQ5JXC2 388 aa20.84■□□□□ 0.93
CCM2-216ENST00000488727 C1orf220Q5T0J3 134 aa20.84■□□□□ 0.93
CCM2-216ENST00000488727 INTS8Q75QN2 995 aaKnown RBP20.84■□□□□ 0.93
CCM2-216ENST00000488727 TMEM173Q86WV6 379 aaPredicted RBP20.84■□□□□ 0.93
CCM2-216ENST00000488727 OR5B17Q8NGF7 314 aa20.84■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms