RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 CYP3A5P20815 502 aa13.76□□□□□ -0.21
VPS13D-205ENST00000473099 TNFAIP3P21580 790 aa13.76□□□□□ -0.21
VPS13D-205ENST00000473099 USP8P40818 1118 aa13.76□□□□□ -0.21
VPS13D-205ENST00000473099 MYL6P60660 151 aa13.76□□□□□ -0.21
VPS13D-205ENST00000473099 ETF1P62495 437 aaKnown RBP13.76□□□□□ -0.21
VPS13D-205ENST00000473099 MYO1EQ12965 1108 aa13.76□□□□□ -0.21
VPS13D-205ENST00000473099 LPIN1Q14693 890 aa13.76□□□□□ -0.21
VPS13D-205ENST00000473099 MTFR1Q15390 333 aa13.76□□□□□ -0.21
VPS13D-205ENST00000473099 NAB2Q15742 525 aa13.76□□□□□ -0.21
VPS13D-205ENST00000473099 ZNF667Q5HYK9 610 aa13.76□□□□□ -0.21
VPS13D-205ENST00000473099 ZNF618Q5T7W0 954 aa13.76□□□□□ -0.21
VPS13D-205ENST00000473099 C1orf127Q8N9H9 656 aa13.76□□□□□ -0.21
VPS13D-205ENST00000473099 ANKLE1Q8NAG6 615 aa13.76□□□□□ -0.21
VPS13D-205ENST00000473099 KIF18AQ8NI77 898 aa13.76□□□□□ -0.21
VPS13D-205ENST00000473099 CRISPLD2Q9H0B8 497 aa13.76□□□□□ -0.21
VPS13D-205ENST00000473099 FAM105AQ9NUU6 356 aa13.76□□□□□ -0.21
VPS13D-205ENST00000473099 DPP3Q9NY33 737 aa13.76□□□□□ -0.21
VPS13D-205ENST00000473099 ADAMTS1Q9UHI8 967 aa13.76□□□□□ -0.21
VPS13D-205ENST00000473099 PADI3Q9ULW8 664 aa13.76□□□□□ -0.21
VPS13D-205ENST00000473099 CNTN6Q9UQ52 1028 aa13.76□□□□□ -0.21
VPS13D-205ENST00000473099 REXO2Q9Y3B8 237 aaKnown RBP13.76□□□□□ -0.21
VPS13D-205ENST00000473099 NUB1Q9Y5A7 615 aa13.76□□□□□ -0.21
VPS13D-205ENST00000473099 PCDHB2Q9Y5E7 798 aa13.76□□□□□ -0.21
VPS13D-205ENST00000473099 A0A087X0T9 212 aa13.75□□□□□ -0.21
VPS13D-205ENST00000473099 PITPNM1O00562 1244 aa13.75□□□□□ -0.21
VPS13D-205ENST00000473099 MEFVO15553 781 aaPredicted RBP13.75□□□□□ -0.21
VPS13D-205ENST00000473099 ZNF623O75123 536 aa13.75□□□□□ -0.21
VPS13D-205ENST00000473099 PARNO95453 639 aaKnown RBP13.75□□□□□ -0.21
VPS13D-205ENST00000473099 ITGB3P05106 788 aa13.75□□□□□ -0.21
VPS13D-205ENST00000473099 KRT19P08727 400 aa13.75□□□□□ -0.21
VPS13D-205ENST00000473099 FAM228BP0C875 321 aa13.75□□□□□ -0.21
VPS13D-205ENST00000473099 GHRP10912 638 aa13.75□□□□□ -0.21
VPS13D-205ENST00000473099 ITGA4P13612 1032 aa13.75□□□□□ -0.21
VPS13D-205ENST00000473099 KRT5P13647 590 aa13.75□□□□□ -0.21
VPS13D-205ENST00000473099 ATF7P17544 494 aaPredicted RBP13.75□□□□□ -0.21
VPS13D-205ENST00000473099 GFPT1Q06210 699 aaPredicted RBP13.75□□□□□ -0.21
VPS13D-205ENST00000473099 ZBTB6Q15916 424 aa13.75□□□□□ -0.21
VPS13D-205ENST00000473099 CCDC122Q5T0U0 273 aa13.75□□□□□ -0.21
VPS13D-205ENST00000473099 PPP1R2P3Q6NXS1 205 aa13.75□□□□□ -0.21
VPS13D-205ENST00000473099 ALKBH5Q6P6C2 394 aaKnown RBP13.75□□□□□ -0.21
VPS13D-205ENST00000473099 MRPL10Q7Z7H8 261 aaKnown RBP13.75□□□□□ -0.21
VPS13D-205ENST00000473099 FAM126BQ8IXS8 530 aa13.75□□□□□ -0.21
VPS13D-205ENST00000473099 LRRC52Q8N7C0 313 aa13.75□□□□□ -0.21
VPS13D-205ENST00000473099 SMG8Q8ND04 991 aaKnown RBP13.75□□□□□ -0.21
VPS13D-205ENST00000473099 EPS8L1Q8TE68 723 aa13.75□□□□□ -0.21
VPS13D-205ENST00000473099 KAT5Q92993 513 aa13.75□□□□□ -0.21
VPS13D-205ENST00000473099 ARMC5Q96C12 935 aa13.75□□□□□ -0.21
VPS13D-205ENST00000473099 PGBD4Q96DM1 585 aa13.75□□□□□ -0.21
VPS13D-205ENST00000473099 ZNF333Q96JL9 665 aa13.75□□□□□ -0.21
VPS13D-205ENST00000473099 AGPAT1Q99943 283 aa13.75□□□□□ -0.21
VPS13D-205ENST00000473099 SYT11Q9BT88 431 aa13.75□□□□□ -0.21
VPS13D-205ENST00000473099 FTHL17Q9BXU8 183 aa13.75□□□□□ -0.21
VPS13D-205ENST00000473099 XYLT2Q9H1B5 865 aa13.75□□□□□ -0.21
VPS13D-205ENST00000473099 TRPV6Q9H1D0 765 aa13.75□□□□□ -0.21
VPS13D-205ENST00000473099 CYP3A43Q9HB55 503 aa13.75□□□□□ -0.21
VPS13D-205ENST00000473099 APOBEC3GQ9HC16 384 aaKnown RBP13.75□□□□□ -0.21
VPS13D-205ENST00000473099 UBN1Q9NPG3 1134 aa13.75□□□□□ -0.21
VPS13D-205ENST00000473099 SLC38A7Q9NVC3 462 aa13.75□□□□□ -0.21
VPS13D-205ENST00000473099 PARP2Q9UGN5 583 aa13.75□□□□□ -0.21
VPS13D-205ENST00000473099 SIX4Q9UIU6 781 aa13.75□□□□□ -0.21
VPS13D-205ENST00000473099 NAGPAQ9UK23 515 aa13.75□□□□□ -0.21
VPS13D-205ENST00000473099 GIT1Q9Y2X7 761 aa13.75□□□□□ -0.21
VPS13D-205ENST00000473099 PAXBP1Q9Y5B6 917 aa13.75□□□□□ -0.21
VPS13D-205ENST00000473099 KIAA0100Q14667 2235 aaKnown RBP13.74□□□□□ -0.21
VPS13D-205ENST00000473099 BTNL10A8MVZ5 291 aa13.74□□□□□ -0.21
VPS13D-205ENST00000473099 ZNF263O14978 683 aa13.74□□□□□ -0.21
VPS13D-205ENST00000473099 CYP26A1O43174 497 aa13.74□□□□□ -0.21
VPS13D-205ENST00000473099 SGPL1O95470 568 aa13.74□□□□□ -0.21
VPS13D-205ENST00000473099 PNMA6AP0CW24 399 aaPredicted RBP13.74□□□□□ -0.21
VPS13D-205ENST00000473099 GZMAP12544 262 aa13.74□□□□□ -0.21
VPS13D-205ENST00000473099 SELPP16109 830 aa13.74□□□□□ -0.21
VPS13D-205ENST00000473099 POLR2BP30876 1174 aaKnown RBP13.74□□□□□ -0.21
VPS13D-205ENST00000473099 CD52P31358 61 aa13.74□□□□□ -0.21
VPS13D-205ENST00000473099 PNPLA4P41247 253 aa13.74□□□□□ -0.21
VPS13D-205ENST00000473099 ARHGAP25P42331 645 aa13.74□□□□□ -0.21
VPS13D-205ENST00000473099 CYP27A1Q02318 531 aa13.74□□□□□ -0.21
VPS13D-205ENST00000473099 DSC3Q14574 896 aa13.74□□□□□ -0.21
VPS13D-205ENST00000473099 C1orf53Q5VUE5 145 aa13.74□□□□□ -0.21
VPS13D-205ENST00000473099 SPOPLQ6IQ16 392 aa13.74□□□□□ -0.21
VPS13D-205ENST00000473099 TRIM72Q6ZMU5 477 aa13.74□□□□□ -0.21
VPS13D-205ENST00000473099 RNF10Q8N5U6 811 aaKnown RBP13.74□□□□□ -0.21
VPS13D-205ENST00000473099 TET1Q8NFU7 2136 aa13.74□□□□□ -0.21
VPS13D-205ENST00000473099 SLC30A5Q8TAD4 765 aa13.74□□□□□ -0.21
VPS13D-205ENST00000473099 CALR3Q96L12 384 aaKnown RBP13.74□□□□□ -0.21
VPS13D-205ENST00000473099 ZNF560Q96MR9 790 aa13.74□□□□□ -0.21
VPS13D-205ENST00000473099 RPS6KC1Q96S38 1066 aa13.74□□□□□ -0.21
VPS13D-205ENST00000473099 APOL6Q9BWW8 343 aa13.74□□□□□ -0.21
VPS13D-205ENST00000473099 BCO2Q9BYV7 579 aa13.74□□□□□ -0.21
VPS13D-205ENST00000473099 DNAI2Q9GZS0 605 aa13.74□□□□□ -0.21
VPS13D-205ENST00000473099 AGO3Q9H9G7 860 aaKnown RBP13.74□□□□□ -0.21
VPS13D-205ENST00000473099 LZTFL1Q9NQ48 299 aa13.74□□□□□ -0.21
VPS13D-205ENST00000473099 NENFQ9UMX5 172 aa13.74□□□□□ -0.21
VPS13D-205ENST00000473099 AGAP1Q9UPQ3 857 aa13.74□□□□□ -0.21
VPS13D-205ENST00000473099 HES2Q9Y543 173 aa13.74□□□□□ -0.21
VPS13D-205ENST00000473099 PCDHB4Q9Y5E5 795 aa13.74□□□□□ -0.21
VPS13D-205ENST00000473099 TTC3P53804 2025 aa13.74□□□□□ -0.21
VPS13D-205ENST00000473099 TFRCP02786 760 aaKnown RBP13.73□□□□□ -0.21
VPS13D-205ENST00000473099 H2AFZP0C0S5 128 aa13.73□□□□□ -0.21
VPS13D-205ENST00000473099 CYP11B1P15538 503 aa13.73□□□□□ -0.21
VPS13D-205ENST00000473099 ACO1P21399 889 aaKnown RBP13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms