RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 ALDH7A1P49419 539 aaKnown RBP15.97■□□□□ 0.15
COL9A3-209ENST00000469852 KCNJ12Q14500 433 aa15.97■□□□□ 0.15
COL9A3-209ENST00000469852 DUOXA2Q1HG44 320 aa15.97■□□□□ 0.15
COL9A3-209ENST00000469852 CBWD6Q4V339 395 aa15.97■□□□□ 0.15
COL9A3-209ENST00000469852 CBWD3Q5JTY5 395 aa15.97■□□□□ 0.15
COL9A3-209ENST00000469852 CBWD5Q5RIA9 395 aa15.97■□□□□ 0.15
COL9A3-209ENST00000469852 SV2AQ7L0J3 742 aa15.97■□□□□ 0.15
COL9A3-209ENST00000469852 CREBRFQ8IUR6 639 aa15.97■□□□□ 0.15
COL9A3-209ENST00000469852 KLHL23Q8NBE8 558 aa15.97■□□□□ 0.15
COL9A3-209ENST00000469852 METTL14Q9HCE5 456 aaKnown RBP15.97■□□□□ 0.15
COL9A3-209ENST00000469852 TRANK1O15050 2925 aa15.96■□□□□ 0.15
COL9A3-209ENST00000469852 VWA8A3KMH1 1905 aa15.96■□□□□ 0.15
COL9A3-209ENST00000469852 C5orf67F2Z3F1 127 aa15.96■□□□□ 0.15
COL9A3-209ENST00000469852 I3L4J1 428 aa15.96■□□□□ 0.15
COL9A3-209ENST00000469852 RFXAPO00287 272 aa15.96■□□□□ 0.15
COL9A3-209ENST00000469852 PIRO00625 290 aa15.96■□□□□ 0.15
COL9A3-209ENST00000469852 XPOTO43592 962 aaKnown RBP15.96■□□□□ 0.15
COL9A3-209ENST00000469852 FGF18O76093 207 aa15.96■□□□□ 0.15
COL9A3-209ENST00000469852 TNNC2P02585 160 aa15.96■□□□□ 0.15
COL9A3-209ENST00000469852 ATP1A3P13637 1013 aa15.96■□□□□ 0.15
COL9A3-209ENST00000469852 BRCC3P46736 316 aa15.96■□□□□ 0.15
COL9A3-209ENST00000469852 ENPEPQ07075 957 aa15.96■□□□□ 0.15
COL9A3-209ENST00000469852 ZACNQ401N2 412 aa15.96■□□□□ 0.15
COL9A3-209ENST00000469852 GAS2L3Q86XJ1 694 aa15.96■□□□□ 0.15
COL9A3-209ENST00000469852 FAM200AQ8TCP9 573 aa15.96■□□□□ 0.15
COL9A3-209ENST00000469852 CACTINQ8WUQ7 758 aaKnown RBP15.96■□□□□ 0.15
COL9A3-209ENST00000469852 ARNTL2Q8WYA1 636 aa15.96■□□□□ 0.15
COL9A3-209ENST00000469852 IGSF21Q96ID5 467 aa15.96■□□□□ 0.15
COL9A3-209ENST00000469852 UROC1Q96N76 676 aa15.96■□□□□ 0.15
COL9A3-209ENST00000469852 ALG13Q9NP73 1137 aaKnown RBP15.96■□□□□ 0.15
COL9A3-209ENST00000469852 ITGA11Q9UKX5 1188 aa15.96■□□□□ 0.15
COL9A3-209ENST00000469852 AGAP1Q9UPQ3 857 aa15.96■□□□□ 0.15
COL9A3-209ENST00000469852 TMEM189-UBE2V1I3L0A0 370 aa15.95■□□□□ 0.14
COL9A3-209ENST00000469852 B3GAT3O94766 335 aa15.95■□□□□ 0.14
COL9A3-209ENST00000469852 EFEMP2O95967 443 aa15.95■□□□□ 0.14
COL9A3-209ENST00000469852 KRT19P08727 400 aa15.95■□□□□ 0.14
COL9A3-209ENST00000469852 DNAJB1P25685 340 aa15.95■□□□□ 0.14
COL9A3-209ENST00000469852 RPL9P32969 192 aaKnown RBP15.95■□□□□ 0.14
COL9A3-209ENST00000469852 MTIF2P46199 727 aaKnown RBP15.95■□□□□ 0.14
COL9A3-209ENST00000469852 BIRC3Q13489 604 aa15.95■□□□□ 0.14
COL9A3-209ENST00000469852 TCP11X2Q5H9J9 407 aa15.95■□□□□ 0.14
COL9A3-209ENST00000469852 MIIPQ5JXC2 388 aa15.95■□□□□ 0.14
COL9A3-209ENST00000469852 ZNF697Q5TEC3 545 aa15.95■□□□□ 0.14
COL9A3-209ENST00000469852 DCLRE1AQ6PJP8 1040 aa15.95■□□□□ 0.14
COL9A3-209ENST00000469852 TAS1R1Q7RTX1 841 aa15.95■□□□□ 0.14
COL9A3-209ENST00000469852 FBXO22Q8NEZ5 403 aa15.95■□□□□ 0.14
COL9A3-209ENST00000469852 TAS1R2Q8TE23 839 aa15.95■□□□□ 0.14
COL9A3-209ENST00000469852 GDPD5Q8WTR4 605 aa15.95■□□□□ 0.14
COL9A3-209ENST00000469852 DDX27Q96GQ7 796 aaKnown RBP15.95■□□□□ 0.14
COL9A3-209ENST00000469852 B3GALT6Q96L58 329 aa15.95■□□□□ 0.14
COL9A3-209ENST00000469852 GPR62Q9BZJ7 368 aa15.95■□□□□ 0.14
COL9A3-209ENST00000469852 ZNF576Q9H609 170 aa15.95■□□□□ 0.14
COL9A3-209ENST00000469852 TMEM8AQ9HCN3 771 aa15.95■□□□□ 0.14
COL9A3-209ENST00000469852 AAASQ9NRG9 546 aa15.95■□□□□ 0.14
COL9A3-209ENST00000469852 TAB2Q9NYJ8 693 aa15.95■□□□□ 0.14
COL9A3-209ENST00000469852 SPG21Q9NZD8 308 aa15.95■□□□□ 0.14
COL9A3-209ENST00000469852 ADAM28Q9UKQ2 775 aa15.95■□□□□ 0.14
COL9A3-209ENST00000469852 PCDHB12Q9Y5F1 795 aa15.95■□□□□ 0.14
COL9A3-209ENST00000469852 TSC2P49815 1807 aa15.95■□□□□ 0.14
COL9A3-209ENST00000469852 SMTNL1A8MU46 457 aa15.94■□□□□ 0.14
COL9A3-209ENST00000469852 GRM6O15303 877 aa15.94■□□□□ 0.14
COL9A3-209ENST00000469852 HLA-DRAP01903 254 aa15.94■□□□□ 0.14
COL9A3-209ENST00000469852 FMO5P49326 533 aa15.94■□□□□ 0.14
COL9A3-209ENST00000469852 MXI1P50539 228 aa15.94■□□□□ 0.14
COL9A3-209ENST00000469852 MYL6P60660 151 aa15.94■□□□□ 0.14
COL9A3-209ENST00000469852 KCNH2Q12809 1159 aa15.94■□□□□ 0.14
COL9A3-209ENST00000469852 KRT31Q15323 416 aa15.94■□□□□ 0.14
COL9A3-209ENST00000469852 TIGD5Q53EQ6 642 aa15.94■□□□□ 0.14
COL9A3-209ENST00000469852 APTXQ7Z2E3 356 aaKnown RBP15.94■□□□□ 0.14
COL9A3-209ENST00000469852 USP37Q86T82 979 aa15.94■□□□□ 0.14
COL9A3-209ENST00000469852 FAM114A1Q8IWE2 563 aa15.94■□□□□ 0.14
COL9A3-209ENST00000469852 PHF6Q8IWS0 365 aaKnown RBP eCLIP15.94■□□□□ 0.14
COL9A3-209ENST00000469852 RNF168Q8IYW5 571 aaPredicted RBP15.94■□□□□ 0.14
COL9A3-209ENST00000469852 RNF214Q8ND24 703 aa15.94■□□□□ 0.14
COL9A3-209ENST00000469852 SEMA4DQ92854 862 aa15.94■□□□□ 0.14
COL9A3-209ENST00000469852 SAMD11Q96NU1 681 aa15.94■□□□□ 0.14
COL9A3-209ENST00000469852 CDX2Q99626 313 aaPredicted RBP15.94■□□□□ 0.14
COL9A3-209ENST00000469852 TUBGCP2Q9BSJ2 902 aa15.94■□□□□ 0.14
COL9A3-209ENST00000469852 COLEC11Q9BWP8 271 aa15.94■□□□□ 0.14
COL9A3-209ENST00000469852 PLVAPQ9BX97 442 aa15.94■□□□□ 0.14
COL9A3-209ENST00000469852 COL25A1Q9BXS0 654 aaPredicted RBP15.94■□□□□ 0.14
COL9A3-209ENST00000469852 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.94■□□□□ 0.14
COL9A3-209ENST00000469852 RWDD3Q9Y3V2 267 aa15.94■□□□□ 0.14
COL9A3-209ENST00000469852 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.94■□□□□ 0.14
COL9A3-209ENST00000469852 EYSQ5T1H1 3165 aa15.93■□□□□ 0.14
COL9A3-209ENST00000469852 BECN2A8MW95 431 aa15.93■□□□□ 0.14
COL9A3-209ENST00000469852 H3BNC9 293 aa15.93■□□□□ 0.14
COL9A3-209ENST00000469852 PHACTR2O75167 634 aa15.93■□□□□ 0.14
COL9A3-209ENST00000469852 TADA2AO75478 443 aa15.93■□□□□ 0.14
COL9A3-209ENST00000469852 CSPG5O95196 566 aa15.93■□□□□ 0.14
COL9A3-209ENST00000469852 AFPP02771 609 aaKnown RBP15.93■□□□□ 0.14
COL9A3-209ENST00000469852 EEF1GP26641 437 aaKnown RBP15.93■□□□□ 0.14
COL9A3-209ENST00000469852 GTF2H1P32780 548 aa15.93■□□□□ 0.14
COL9A3-209ENST00000469852 PPM1AP35813 382 aa15.93■□□□□ 0.14
COL9A3-209ENST00000469852 AARSP49588 968 aaKnown RBP eCLIP15.93■□□□□ 0.14
COL9A3-209ENST00000469852 AP3M2P53677 418 aa15.93■□□□□ 0.14
COL9A3-209ENST00000469852 LILRA4P59901 499 aa15.93■□□□□ 0.14
COL9A3-209ENST00000469852 RBP5P82980 135 aa15.93■□□□□ 0.14
COL9A3-209ENST00000469852 PLCB3Q01970 1234 aa15.93■□□□□ 0.14
COL9A3-209ENST00000469852 NCOA4Q13772 614 aa15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms