RNA–Protein interactions for RNA: ENST00000466781.5

HPS4-209, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 6,136 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-209ENST00000466781 VPS33BQ9H267 617 aa9.16□□□□□ -0.94
HPS4-209ENST00000466781 AAASQ9NRG9 546 aa9.16□□□□□ -0.94
HPS4-209ENST00000466781 SLC38A7Q9NVC3 462 aa9.16□□□□□ -0.94
HPS4-209ENST00000466781 RRP15Q9Y3B9 282 aaKnown RBP9.16□□□□□ -0.94
HPS4-209ENST00000466781 SLC30A1Q9Y6M5 507 aa9.16□□□□□ -0.94
HPS4-209ENST00000466781 NDUFS3O75489 264 aa9.16□□□□□ -0.94
HPS4-209ENST00000466781 ALDH1A2O94788 518 aa9.16□□□□□ -0.94
HPS4-209ENST00000466781 SFSWAPQ12872 951 aaKnown RBP9.16□□□□□ -0.94
HPS4-209ENST00000466781 QRICH1Q2TAL8 776 aa9.16□□□□□ -0.94
HPS4-209ENST00000466781 EMBQ6PCB8 327 aa9.16□□□□□ -0.94
HPS4-209ENST00000466781 PLEKHM3Q6ZWE6 761 aa9.16□□□□□ -0.94
HPS4-209ENST00000466781 CLEC10AQ8IUN9 316 aa9.16□□□□□ -0.94
HPS4-209ENST00000466781 STAG2Q8N3U4 1231 aa9.16□□□□□ -0.94
HPS4-209ENST00000466781 TIPINQ9BVW5 301 aa9.16□□□□□ -0.94
HPS4-209ENST00000466781 FAM32AQ9Y421 112 aaKnown RBP9.16□□□□□ -0.94
HPS4-209ENST00000466781 PKP3Q9Y446 797 aa9.16□□□□□ -0.94
HPS4-209ENST00000466781 WDR19Q8NEZ3 1342 aa9.16□□□□□ -0.94
HPS4-209ENST00000466781 PVALEFA0A1B0GWK0 134 aa9.16□□□□□ -0.94
HPS4-209ENST00000466781 TRIM49BA6NDI0 452 aa9.16□□□□□ -0.94
HPS4-209ENST00000466781 C3orf70A6NLC5 250 aaPredicted RBP9.16□□□□□ -0.94
HPS4-209ENST00000466781 GGPS1O95749 300 aa9.16□□□□□ -0.94
HPS4-209ENST00000466781 FTLP02792 175 aaPredicted RBP9.16□□□□□ -0.94
HPS4-209ENST00000466781 IMPDH2P12268 514 aa9.16□□□□□ -0.94
HPS4-209ENST00000466781 CASP1P29466 404 aa9.16□□□□□ -0.94
HPS4-209ENST00000466781 RGS2P41220 211 aa9.16□□□□□ -0.94
HPS4-209ENST00000466781 STILQ15468 1287 aa9.16□□□□□ -0.94
HPS4-209ENST00000466781 SV2CQ496J9 727 aa9.16□□□□□ -0.94
HPS4-209ENST00000466781 RPAINQ86UA6 219 aa9.16□□□□□ -0.94
HPS4-209ENST00000466781 PPP1R2P1Q96PQ5 205 aa9.16□□□□□ -0.94
HPS4-209ENST00000466781 SMARCAD1Q9H4L7 1026 aa9.16□□□□□ -0.94
HPS4-209ENST00000466781 H2AFY2Q9P0M6 372 aaPredicted RBP9.16□□□□□ -0.94
HPS4-209ENST00000466781 KIAA0391O15091 583 aaKnown RBP9.15□□□□□ -0.94
HPS4-209ENST00000466781 ANGPT2O15123 496 aa9.15□□□□□ -0.94
HPS4-209ENST00000466781 KCNN4O15554 427 aa9.15□□□□□ -0.94
HPS4-209ENST00000466781 EIF3EP60228 445 aaKnown RBP9.15□□□□□ -0.94
HPS4-209ENST00000466781 RBP5P82980 135 aa9.15□□□□□ -0.94
HPS4-209ENST00000466781 TRIM60Q495X7 471 aa9.15□□□□□ -0.94
HPS4-209ENST00000466781 MFSD4BQ5TF39 518 aa9.15□□□□□ -0.94
HPS4-209ENST00000466781 MTHFD1LQ6UB35 978 aa9.15□□□□□ -0.94
HPS4-209ENST00000466781 CEP70Q8NHQ1 597 aa9.15□□□□□ -0.94
HPS4-209ENST00000466781 NEDD1Q8NHV4 660 aa9.15□□□□□ -0.94
HPS4-209ENST00000466781 UBE2Q2Q8WVN8 375 aa9.15□□□□□ -0.94
HPS4-209ENST00000466781 CLMNQ96JQ2 1002 aa9.15□□□□□ -0.94
HPS4-209ENST00000466781 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.15□□□□□ -0.941e-9■■□□□ 14.2
HPS4-209ENST00000466781 ZNF556Q9HAH1 456 aa9.15□□□□□ -0.94
HPS4-209ENST00000466781 ARHGEF38Q9NXL2 777 aa9.15□□□□□ -0.94
HPS4-209ENST00000466781 PSD3Q9NYI0 1048 aa9.15□□□□□ -0.94
HPS4-209ENST00000466781 POLLQ9UGP5 575 aa9.15□□□□□ -0.94
HPS4-209ENST00000466781 LGALS16A8MUM7 142 aa9.15□□□□□ -0.94
HPS4-209ENST00000466781 DYNC1LI2O43237 492 aaPredicted RBP9.15□□□□□ -0.94
HPS4-209ENST00000466781 CD4P01730 458 aa9.15□□□□□ -0.94
HPS4-209ENST00000466781 CCDC157Q569K6 752 aa9.15□□□□□ -0.94
HPS4-209ENST00000466781 FAM47EQ6ZV65 393 aa9.15□□□□□ -0.94
HPS4-209ENST00000466781 TEX9Q8N6V9 391 aa9.15□□□□□ -0.94
HPS4-209ENST00000466781 ZNF555Q8NEP9 628 aa9.15□□□□□ -0.94
HPS4-209ENST00000466781 TUFT1Q9NNX1 390 aa9.15□□□□□ -0.94
HPS4-209ENST00000466781 NFKBIL1Q9UBC1 381 aaPredicted RBP9.15□□□□□ -0.94
HPS4-209ENST00000466781 AGAP1Q9UPQ3 857 aa9.15□□□□□ -0.94
HPS4-209ENST00000466781 SRGNP10124 158 aa9.15□□□□□ -0.94
HPS4-209ENST00000466781 CARSP49589 748 aaKnown RBP9.15□□□□□ -0.94
HPS4-209ENST00000466781 ARFIP2P53365 341 aa9.15□□□□□ -0.94
HPS4-209ENST00000466781 ZNF512BQ96KM6 892 aaPredicted RBP9.15□□□□□ -0.94
HPS4-209ENST00000466781 PARD6BQ9BYG5 372 aa9.15□□□□□ -0.94
HPS4-209ENST00000466781 LRRIQ3A6PVS8 624 aaPredicted RBP9.15□□□□□ -0.95
HPS4-209ENST00000466781 EEF2KO00418 725 aaKnown RBP9.15□□□□□ -0.95
HPS4-209ENST00000466781 DDHD2O94830 711 aa9.15□□□□□ -0.95
HPS4-209ENST00000466781 PSMA3P25788 255 aa9.15□□□□□ -0.95
HPS4-209ENST00000466781 KLRK1P26718 216 aa9.15□□□□□ -0.95
HPS4-209ENST00000466781 SOAT1P35610 550 aa9.15□□□□□ -0.95
HPS4-209ENST00000466781 OR1G1P47890 313 aa9.15□□□□□ -0.95
HPS4-209ENST00000466781 INPP5AQ14642 412 aa9.15□□□□□ -0.95
HPS4-209ENST00000466781 HIBCHQ6NVY1 386 aaPredicted RBP9.15□□□□□ -0.95
HPS4-209ENST00000466781 GLYCTKQ8IVS8 523 aa9.15□□□□□ -0.95
HPS4-209ENST00000466781 USP33Q8TEY7 942 aa9.15□□□□□ -0.95
HPS4-209ENST00000466781 COG1Q8WTW3 980 aa9.15□□□□□ -0.95
HPS4-209ENST00000466781 ABHD10Q9NUJ1 306 aa9.15□□□□□ -0.95
HPS4-209ENST00000466781 CD274Q9NZQ7 290 aa9.15□□□□□ -0.95
HPS4-209ENST00000466781 EMSYQ7Z589 1322 aa9.15□□□□□ -0.95
HPS4-209ENST00000466781 GRID2IPA4D2P6 1211 aa9.14□□□□□ -0.95
HPS4-209ENST00000466781 MAFGO15525 162 aa9.14□□□□□ -0.95
HPS4-209ENST00000466781 MRPL28Q13084 256 aaKnown RBP9.14□□□□□ -0.95
HPS4-209ENST00000466781 ZNF211Q13398 564 aaPredicted RBP9.14□□□□□ -0.95
HPS4-209ENST00000466781 CUL3Q13618 768 aa9.14□□□□□ -0.95
HPS4-209ENST00000466781 ZNF746Q6NUN9 644 aaPredicted RBP9.14□□□□□ -0.95
HPS4-209ENST00000466781 ICA1LQ8NDH6 482 aa9.14□□□□□ -0.95
HPS4-209ENST00000466781 HES6Q96HZ4 224 aa9.14□□□□□ -0.95
HPS4-209ENST00000466781 TEX13BQ9BXU2 312 aa9.14□□□□□ -0.95
HPS4-209ENST00000466781 CATSPERBQ9H7T0 1116 aa9.14□□□□□ -0.95
HPS4-209ENST00000466781 BARHL2Q9NY43 387 aa9.14□□□□□ -0.95
HPS4-209ENST00000466781 MYO5BQ9ULV0 1848 aa9.14□□□□□ -0.95
HPS4-209ENST00000466781 IFT172Q9UG01 1749 aa9.14□□□□□ -0.95
HPS4-209ENST00000466781 CEMIPQ8WUJ3 1361 aa9.14□□□□□ -0.95
HPS4-209ENST00000466781 CPT1AP50416 773 aa9.14□□□□□ -0.95
HPS4-209ENST00000466781 EPHA7Q15375 998 aa9.14□□□□□ -0.95
HPS4-209ENST00000466781 HIF1AQ16665 826 aa9.14□□□□□ -0.95
HPS4-209ENST00000466781 ANKS6Q68DC2 871 aa9.14□□□□□ -0.95
HPS4-209ENST00000466781 C16orf86Q6ZW13 317 aa9.14□□□□□ -0.95
HPS4-209ENST00000466781 PLEKHA8Q96JA3 519 aa9.14□□□□□ -0.95
HPS4-209ENST00000466781 HARS2P49590 506 aaKnown RBP9.14□□□□□ -0.95
HPS4-209ENST00000466781 NEK2P51955 445 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms