RNA–Protein interactions for RNA: ENST00000462254.1

CSMD3-205, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 2

Gene CSMD3, Length 457 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-205ENST00000462254 NXPE1Q8N323 547 aa5.3□□□□□ -1.56
CSMD3-205ENST00000462254 ARHGEF39Q8N4T4 335 aa5.3□□□□□ -1.56
CSMD3-205ENST00000462254 POF1BQ8WVV4 589 aa5.3□□□□□ -1.56
CSMD3-205ENST00000462254 FAM151AQ8WW52 585 aa5.3□□□□□ -1.56
CSMD3-205ENST00000462254 CCDC140Q96MF4 163 aa5.3□□□□□ -1.56
CSMD3-205ENST00000462254 FCRL3Q96P31 734 aaPredicted RBP5.3□□□□□ -1.56
CSMD3-205ENST00000462254 TAAR9Q96RI9 348 aa5.3□□□□□ -1.56
CSMD3-205ENST00000462254 KRT23Q9C075 422 aa5.3□□□□□ -1.56
CSMD3-205ENST00000462254 TMEM39BQ9GZU3 492 aa5.3□□□□□ -1.56
CSMD3-205ENST00000462254 ALDH8A1Q9H2A2 487 aaPredicted RBP5.3□□□□□ -1.56
CSMD3-205ENST00000462254 RNF41Q9H4P4 317 aaPredicted RBP5.3□□□□□ -1.56
CSMD3-205ENST00000462254 VEZTQ9HBM0 779 aa5.3□□□□□ -1.56
CSMD3-205ENST00000462254 ADARB2Q9NS39 739 aaKnown RBP5.3□□□□□ -1.56
CSMD3-205ENST00000462254 TOMM22Q9NS69 142 aa5.3□□□□□ -1.56
CSMD3-205ENST00000462254 PDRG1Q9NUG6 133 aa5.3□□□□□ -1.56
CSMD3-205ENST00000462254 MKS1Q9NXB0 559 aa5.3□□□□□ -1.56
CSMD3-205ENST00000462254 GGA3Q9NZ52 723 aa5.3□□□□□ -1.56
CSMD3-205ENST00000462254 TMOD2Q9NZR1 351 aa5.3□□□□□ -1.56
CSMD3-205ENST00000462254 CGGBP1Q9UFW8 167 aaPredicted RBP5.3□□□□□ -1.56
CSMD3-205ENST00000462254 POLG2Q9UHN1 485 aa5.3□□□□□ -1.56
CSMD3-205ENST00000462254 DIS3Q9Y2L1 958 aaKnown RBP5.3□□□□□ -1.56
CSMD3-205ENST00000462254 PLIN4Q96Q06 1357 aa5.29□□□□□ -1.56
CSMD3-205ENST00000462254 WDR19Q8NEZ3 1342 aa5.29□□□□□ -1.56
CSMD3-205ENST00000462254 DYTNA2CJ06 578 aa5.29□□□□□ -1.56
CSMD3-205ENST00000462254 SH2B2O14492 632 aaPredicted RBP5.29□□□□□ -1.56
CSMD3-205ENST00000462254 TPP1O14773 563 aa5.29□□□□□ -1.56
CSMD3-205ENST00000462254 MYO1BO43795 1136 aa5.29□□□□□ -1.56
CSMD3-205ENST00000462254 NMT2O60551 498 aa5.29□□□□□ -1.56
CSMD3-205ENST00000462254 CTNND1O60716 968 aaKnown RBP5.29□□□□□ -1.56
CSMD3-205ENST00000462254 USP2O75604 605 aaPredicted RBP5.29□□□□□ -1.56
CSMD3-205ENST00000462254 ZBED1O96006 694 aa5.29□□□□□ -1.56
CSMD3-205ENST00000462254 HPXP02790 462 aa5.29□□□□□ -1.56
CSMD3-205ENST00000462254 HLA-DOAP06340 250 aa5.29□□□□□ -1.56
CSMD3-205ENST00000462254 GSTM1P09488 218 aa5.29□□□□□ -1.56
CSMD3-205ENST00000462254 PCP11498 1178 aaKnown RBP5.29□□□□□ -1.56
CSMD3-205ENST00000462254 MCM5P33992 734 aa5.29□□□□□ -1.56
CSMD3-205ENST00000462254 SHMT1P34896 483 aa5.29□□□□□ -1.56
CSMD3-205ENST00000462254 EPHX2P34913 555 aa5.29□□□□□ -1.56
CSMD3-205ENST00000462254 GALK1P51570 392 aa5.29□□□□□ -1.56
CSMD3-205ENST00000462254 ST3GAL1Q11201 340 aa5.29□□□□□ -1.56
CSMD3-205ENST00000462254 TRDNQ13061 729 aa5.29□□□□□ -1.56
CSMD3-205ENST00000462254 TBX2Q13207 712 aaPredicted RBP5.29□□□□□ -1.56
CSMD3-205ENST00000462254 RRP1BQ14684 758 aaKnown RBP5.29□□□□□ -1.56
CSMD3-205ENST00000462254 SEC23AQ15436 765 aa5.29□□□□□ -1.56
CSMD3-205ENST00000462254 PDCD2Q16342 344 aaPredicted RBP5.29□□□□□ -1.56
CSMD3-205ENST00000462254 SHROOM1Q2M3G4 852 aaPredicted RBP5.29□□□□□ -1.56
CSMD3-205ENST00000462254 DPY19L1Q2PZI1 675 aa5.29□□□□□ -1.56
CSMD3-205ENST00000462254 FAM47AQ5JRC9 791 aa5.29□□□□□ -1.56
CSMD3-205ENST00000462254 IFIT1BQ5T764 474 aaKnown RBP5.29□□□□□ -1.56
CSMD3-205ENST00000462254 CWF19L1Q69YN2 538 aaKnown RBP5.29□□□□□ -1.56
CSMD3-205ENST00000462254 PPP4R3AQ6IN85 833 aa5.29□□□□□ -1.56
CSMD3-205ENST00000462254 ABHD17CQ6PCB6 329 aa5.29□□□□□ -1.56
CSMD3-205ENST00000462254 PGM2L1Q6PCE3 622 aa5.29□□□□□ -1.56
CSMD3-205ENST00000462254 HSCBQ8IWL3 235 aa5.29□□□□□ -1.56
CSMD3-205ENST00000462254 CLRN3Q8NCR9 226 aa5.29□□□□□ -1.56
CSMD3-205ENST00000462254 TMEM52Q8NDY8 209 aa5.29□□□□□ -1.56
CSMD3-205ENST00000462254 PDZD8Q8NEN9 1154 aa5.29□□□□□ -1.56
CSMD3-205ENST00000462254 IGDCC4Q8TDY8 1250 aa5.29□□□□□ -1.56
CSMD3-205ENST00000462254 BTN2A2Q8WVV5 523 aa5.29□□□□□ -1.56
CSMD3-205ENST00000462254 ESR2Q92731 530 aa5.29□□□□□ -1.56
CSMD3-205ENST00000462254 ERP27Q96DN0 273 aa5.29□□□□□ -1.56
CSMD3-205ENST00000462254 MAP6Q96JE9 813 aa5.29□□□□□ -1.56
CSMD3-205ENST00000462254 HHIPL1Q96JK4 782 aa5.29□□□□□ -1.56
CSMD3-205ENST00000462254 SGCZQ96LD1 299 aa5.29□□□□□ -1.56
CSMD3-205ENST00000462254 TEPSINQ96N21 525 aa5.29□□□□□ -1.56
CSMD3-205ENST00000462254 DHX36Q9H2U1 1008 aaKnown RBP5.29□□□□□ -1.56
CSMD3-205ENST00000462254 ERVK13-1Q9NX77 482 aa5.29□□□□□ -1.56
CSMD3-205ENST00000462254 SAGE1Q9NXZ1 904 aa5.29□□□□□ -1.56
CSMD3-205ENST00000462254 CLIC5Q9NZA1 410 aa5.29□□□□□ -1.56
CSMD3-205ENST00000462254 SERPINB13Q9UIV8 391 aa5.29□□□□□ -1.56
CSMD3-205ENST00000462254 DNM3Q9UQ16 869 aa5.29□□□□□ -1.56
CSMD3-205ENST00000462254 AKT3Q9Y243 479 aa5.29□□□□□ -1.56
CSMD3-205ENST00000462254 ZKSCAN5Q9Y2L8 839 aa5.29□□□□□ -1.56
CSMD3-205ENST00000462254 SF3B6Q9Y3B4 125 aaKnown RBP5.29□□□□□ -1.56
CSMD3-205ENST00000462254 RABGAP1Q9Y3P9 1069 aa5.29□□□□□ -1.56
CSMD3-205ENST00000462254 TSPY2A6NKD2 308 aa5.28□□□□□ -1.56
CSMD3-205ENST00000462254 BIN1O00499 593 aa5.28□□□□□ -1.56
CSMD3-205ENST00000462254 IFIT3O14879 490 aaKnown RBP5.28□□□□□ -1.56
CSMD3-205ENST00000462254 PCDHGA12O60330 932 aa5.28□□□□□ -1.56
CSMD3-205ENST00000462254 RANBP6O60518 1105 aaKnown RBP5.28□□□□□ -1.56
CSMD3-205ENST00000462254 DTNBO60941 627 aa5.28□□□□□ -1.56
CSMD3-205ENST00000462254 CD3EP07766 207 aa5.28□□□□□ -1.56
CSMD3-205ENST00000462254 SLC3A2P08195 630 aaKnown RBP5.28□□□□□ -1.56
CSMD3-205ENST00000462254 AKR1B1P15121 316 aa5.28□□□□□ -1.56
CSMD3-205ENST00000462254 JUNBP17275 347 aaPredicted RBP5.28□□□□□ -1.56
CSMD3-205ENST00000462254 AFMP43652 599 aa5.28□□□□□ -1.56
CSMD3-205ENST00000462254 JAG1P78504 1218 aa5.28□□□□□ -1.56
CSMD3-205ENST00000462254 HTRA3P83110 453 aa5.28□□□□□ -1.56
CSMD3-205ENST00000462254 TFAP4Q01664 338 aa5.28□□□□□ -1.56
CSMD3-205ENST00000462254 BTKQ06187 659 aa5.28□□□□□ -1.56
CSMD3-205ENST00000462254 TNFAIP1Q13829 316 aa5.28□□□□□ -1.56
CSMD3-205ENST00000462254 ME3Q16798 604 aa5.28□□□□□ -1.56
CSMD3-205ENST00000462254 PRAMEF18Q5VWM3 479 aa5.28□□□□□ -1.56
CSMD3-205ENST00000462254 RCSD1Q6JBY9 416 aa5.28□□□□□ -1.56
CSMD3-205ENST00000462254 TATDN1Q6P1N9 297 aa5.28□□□□□ -1.56
CSMD3-205ENST00000462254 DLK2Q6UY11 383 aa5.28□□□□□ -1.56
CSMD3-205ENST00000462254 USP50Q70EL3 339 aaPredicted RBP5.28□□□□□ -1.56
CSMD3-205ENST00000462254 ZSWIM9Q86XI8 627 aa5.28□□□□□ -1.56
CSMD3-205ENST00000462254 APOBEC3FQ8IUX4 373 aaKnown RBP5.28□□□□□ -1.56
CSMD3-205ENST00000462254 FBXL16Q8N461 479 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms