RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 CNPP09543 421 aaKnown RBP12.84□□□□□ -0.35
VPS52-213ENST00000461743 MCM4P33991 863 aa12.84□□□□□ -0.35
VPS52-213ENST00000461743 GTF2F1P35269 517 aaKnown RBP eCLIP12.84□□□□□ -0.35
VPS52-213ENST00000461743 PPP1R2P41236 205 aa12.84□□□□□ -0.35
VPS52-213ENST00000461743 PNPLA4P41247 253 aa12.84□□□□□ -0.35
VPS52-213ENST00000461743 CLCN4P51793 760 aa12.84□□□□□ -0.35
VPS52-213ENST00000461743 PSMD5Q16401 504 aa12.84□□□□□ -0.35
VPS52-213ENST00000461743 SNRNP35Q16560 246 aaKnown RBP12.84□□□□□ -0.35
VPS52-213ENST00000461743 RTP2Q5QGT7 225 aa12.84□□□□□ -0.35
VPS52-213ENST00000461743 ZNF658Q5TYW1 1059 aaPredicted RBP12.84□□□□□ -0.35
VPS52-213ENST00000461743 CD300LGQ6UXG3 332 aa12.84□□□□□ -0.35
VPS52-213ENST00000461743 ANKS3Q6ZW76 656 aa12.84□□□□□ -0.35
VPS52-213ENST00000461743 WDR49Q8IV35 697 aa12.84□□□□□ -0.35
VPS52-213ENST00000461743 EFCAB13Q8IY85 973 aa12.84□□□□□ -0.35
VPS52-213ENST00000461743 SMRP1Q8NCR6 262 aa12.84□□□□□ -0.35
VPS52-213ENST00000461743 APPL2Q8NEU8 664 aa12.84□□□□□ -0.35
VPS52-213ENST00000461743 AUTS2Q8WXX7 1259 aa12.84□□□□□ -0.35
VPS52-213ENST00000461743 SMARCE1Q969G3 411 aa12.84□□□□□ -0.35
VPS52-213ENST00000461743 KLHL5Q96PQ7 755 aa12.84□□□□□ -0.35
VPS52-213ENST00000461743 PCIF1Q9H4Z3 704 aa12.84□□□□□ -0.35
VPS52-213ENST00000461743 IGFLR1Q9H665 355 aa12.84□□□□□ -0.35
VPS52-213ENST00000461743 MTRRQ9UBK8 725 aa12.84□□□□□ -0.35
VPS52-213ENST00000461743 ITGA11Q9UKX5 1188 aa12.84□□□□□ -0.35
VPS52-213ENST00000461743 TRAF3IP3Q9Y228 551 aa12.84□□□□□ -0.35
VPS52-213ENST00000461743 BACE2Q9Y5Z0 518 aa12.84□□□□□ -0.35
VPS52-213ENST00000461743 ANO9A1A5B4 782 aa12.83□□□□□ -0.36
VPS52-213ENST00000461743 M0QZQ0 153 aa12.83□□□□□ -0.36
VPS52-213ENST00000461743 PIRO00625 290 aa12.83□□□□□ -0.36
VPS52-213ENST00000461743 PER2O15055 1255 aa12.83□□□□□ -0.36
VPS52-213ENST00000461743 TEX28O15482 410 aa12.83□□□□□ -0.36
VPS52-213ENST00000461743 LINC01565O15544 149 aa12.83□□□□□ -0.36
VPS52-213ENST00000461743 GADD45BO75293 160 aaPredicted RBP12.83□□□□□ -0.36
VPS52-213ENST00000461743 GLUD1P00367 558 aa12.83□□□□□ -0.36
VPS52-213ENST00000461743 KLRC2P26717 231 aa12.83□□□□□ -0.36
VPS52-213ENST00000461743 TFF2Q03403 129 aa12.83□□□□□ -0.36
VPS52-213ENST00000461743 ENPEPQ07075 957 aa12.83□□□□□ -0.36
VPS52-213ENST00000461743 CYP24A1Q07973 514 aa12.83□□□□□ -0.36
VPS52-213ENST00000461743 C9orf57Q5W0N0 161 aa12.83□□□□□ -0.36
VPS52-213ENST00000461743 ANKRD54Q6NXT1 300 aa12.83□□□□□ -0.36
VPS52-213ENST00000461743 TAS1R1Q7RTX1 841 aa12.83□□□□□ -0.36
VPS52-213ENST00000461743 VN1R2Q8NFZ6 395 aa12.83□□□□□ -0.36
VPS52-213ENST00000461743 SLC22A17Q8WUG5 538 aa12.83□□□□□ -0.36
VPS52-213ENST00000461743 RIN2Q8WYP3 895 aaPredicted RBP12.83□□□□□ -0.36
VPS52-213ENST00000461743 RABGGTAQ92696 567 aa12.83□□□□□ -0.36
VPS52-213ENST00000461743 ANKRD36BP1Q96IX9 119 aa12.83□□□□□ -0.36
VPS52-213ENST00000461743 SFXN1Q9H9B4 322 aa12.83□□□□□ -0.36
VPS52-213ENST00000461743 DPP3Q9NY33 737 aa12.83□□□□□ -0.36
VPS52-213ENST00000461743 CLEC1BQ9P126 229 aa12.83□□□□□ -0.36
VPS52-213ENST00000461743 PCDHB8Q9UN66 801 aa12.83□□□□□ -0.36
VPS52-213ENST00000461743 DOCK8Q8NF50 2099 aa12.83□□□□□ -0.36
VPS52-213ENST00000461743 GOLGA8IPA6NC78 632 aa12.82□□□□□ -0.36
VPS52-213ENST00000461743 GOLGA8JA6NMD2 632 aa12.82□□□□□ -0.36
VPS52-213ENST00000461743 H7C4K7 107 aa12.82□□□□□ -0.36
VPS52-213ENST00000461743 C2CD2LO14523 706 aa12.82□□□□□ -0.36
VPS52-213ENST00000461743 EXOC3O60645 756 aa12.82□□□□□ -0.36
VPS52-213ENST00000461743 PAPLNO95428 1278 aa12.82□□□□□ -0.36
VPS52-213ENST00000461743 NR3C1P04150 777 aa12.82□□□□□ -0.36
VPS52-213ENST00000461743 TMEM191BP0C7N4 346 aa12.82□□□□□ -0.36
VPS52-213ENST00000461743 ODC1P11926 461 aa12.82□□□□□ -0.36
VPS52-213ENST00000461743 TYMPP19971 482 aa12.82□□□□□ -0.36
VPS52-213ENST00000461743 TKTP29401 623 aaKnown RBP12.82□□□□□ -0.36
VPS52-213ENST00000461743 TAF6P49848 677 aa12.82□□□□□ -0.36
VPS52-213ENST00000461743 CYP2J2P51589 502 aa12.82□□□□□ -0.36
VPS52-213ENST00000461743 ITIH3Q06033 890 aa12.82□□□□□ -0.36
VPS52-213ENST00000461743 SPAG1Q07617 926 aa12.82□□□□□ -0.36
VPS52-213ENST00000461743 STIM1Q13586 685 aa12.82□□□□□ -0.36
VPS52-213ENST00000461743 PSMD6Q15008 389 aa12.82□□□□□ -0.36
VPS52-213ENST00000461743 EDRF1Q3B7T1 1238 aa12.82□□□□□ -0.36
VPS52-213ENST00000461743 SV2CQ496J9 727 aa12.82□□□□□ -0.36
VPS52-213ENST00000461743 PTCRAQ6ISU1 281 aaPredicted RBP12.82□□□□□ -0.36
VPS52-213ENST00000461743 ZNF280DQ6N043 979 aa12.82□□□□□ -0.36
VPS52-213ENST00000461743 EP400NLQ6ZTU2 488 aa12.82□□□□□ -0.36
VPS52-213ENST00000461743 RTL10Q7L3V2 364 aa12.82□□□□□ -0.36
VPS52-213ENST00000461743 USP37Q86T82 979 aa12.82□□□□□ -0.36
VPS52-213ENST00000461743 CBWD2Q8IUF1 395 aa12.82□□□□□ -0.36
VPS52-213ENST00000461743 LRRC52Q8N7C0 313 aa12.82□□□□□ -0.36
VPS52-213ENST00000461743 ZSWIM2Q8NEG5 633 aa12.82□□□□□ -0.36
VPS52-213ENST00000461743 LNX1Q8TBB1 728 aaPredicted RBP12.82□□□□□ -0.36
VPS52-213ENST00000461743 CGRRF1Q99675 332 aa12.82□□□□□ -0.36
VPS52-213ENST00000461743 RHOBTB2Q9BYZ6 727 aa12.82□□□□□ -0.36
VPS52-213ENST00000461743 PLEKHA4Q9H4M7 779 aa12.82□□□□□ -0.36
VPS52-213ENST00000461743 INTS13Q9NVM9 706 aa12.82□□□□□ -0.36
VPS52-213ENST00000461743 DMAC2Q9NW81 257 aa12.82□□□□□ -0.36
VPS52-213ENST00000461743 PRKAG3Q9UGI9 489 aa12.82□□□□□ -0.36
VPS52-213ENST00000461743 DSEQ9UL01 958 aa12.82□□□□□ -0.36
VPS52-213ENST00000461743 BARX2Q9UMQ3 279 aaPredicted RBP12.82□□□□□ -0.36
VPS52-213ENST00000461743 PCDHA5Q9Y5H7 936 aa12.82□□□□□ -0.36
VPS52-213ENST00000461743 MUC3AQ02505 3323 aa12.82□□□□□ -0.36
VPS52-213ENST00000461743 GRXCR2A6NFK2 248 aa12.81□□□□□ -0.36
VPS52-213ENST00000461743 GOLGA6L22H0YM25 854 aa12.81□□□□□ -0.36
VPS52-213ENST00000461743 H3BQ06 376 aaPredicted RBP12.81□□□□□ -0.36
VPS52-213ENST00000461743 CLIC2O15247 247 aa12.81□□□□□ -0.36
VPS52-213ENST00000461743 MBTPS2O43462 519 aa12.81□□□□□ -0.36
VPS52-213ENST00000461743 TNNC2P02585 160 aa12.81□□□□□ -0.36
VPS52-213ENST00000461743 RPL13P26373 211 aaKnown RBP12.81□□□□□ -0.36
VPS52-213ENST00000461743 BRCC3P46736 316 aa12.81□□□□□ -0.36
VPS52-213ENST00000461743 AP3M2P53677 418 aa12.81□□□□□ -0.36
VPS52-213ENST00000461743 LILRA4P59901 499 aa12.81□□□□□ -0.36
VPS52-213ENST00000461743 TFAMQ00059 246 aaKnown RBP12.81□□□□□ -0.36
VPS52-213ENST00000461743 DLX2Q07687 328 aaPredicted RBP12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms