RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 SF3B6Q9Y3B4 125 aaKnown RBP8.42□□□□□ -1.06
USP54-208ENST00000461520 IRAK3Q9Y616 596 aa8.42□□□□□ -1.06
USP54-208ENST00000461520 LCTP09848 1927 aa8.42□□□□□ -1.06
USP54-208ENST00000461520 LAMA4Q16363 1823 aa8.41□□□□□ -1.06
USP54-208ENST00000461520 ABLIM1O14639 778 aa8.41□□□□□ -1.06
USP54-208ENST00000461520 N4BP3O15049 544 aa8.41□□□□□ -1.06
USP54-208ENST00000461520 B4GALT4O60513 344 aa8.41□□□□□ -1.06
USP54-208ENST00000461520 FGBP02675 491 aa8.41□□□□□ -1.06
USP54-208ENST00000461520 TXNP10599 105 aaKnown RBP8.41□□□□□ -1.06
USP54-208ENST00000461520 GSPT1P15170 499 aaKnown RBP8.41□□□□□ -1.06
USP54-208ENST00000461520 CYP2C18P33260 490 aa8.41□□□□□ -1.06
USP54-208ENST00000461520 NASPP49321 788 aaPredicted RBP8.41□□□□□ -1.06
USP54-208ENST00000461520 CDR1P51861 262 aa8.41□□□□□ -1.06
USP54-208ENST00000461520 PSMC6P62333 389 aa8.41□□□□□ -1.06
USP54-208ENST00000461520 TRDNQ13061 729 aa8.41□□□□□ -1.06
USP54-208ENST00000461520 QRICH1Q2TAL8 776 aa8.41□□□□□ -1.06
USP54-208ENST00000461520 IFIT1BQ5T764 474 aaKnown RBP8.41□□□□□ -1.06
USP54-208ENST00000461520 TTC22Q5TAA0 569 aa8.41□□□□□ -1.06
USP54-208ENST00000461520 TMC6Q7Z403 805 aa8.41□□□□□ -1.06
USP54-208ENST00000461520 RPUSD2Q8IZ73 545 aaKnown RBP8.41□□□□□ -1.06
USP54-208ENST00000461520 NSUN6Q8TEA1 469 aaKnown RBP8.41□□□□□ -1.06
USP54-208ENST00000461520 RUFY2Q8WXA3 655 aa8.41□□□□□ -1.06
USP54-208ENST00000461520 PPM1EQ8WY54 764 aa8.41□□□□□ -1.06
USP54-208ENST00000461520 HERVK_113Q902F9 699 aa8.41□□□□□ -1.06
USP54-208ENST00000461520 IWS1Q96ST2 819 aa8.41□□□□□ -1.06
USP54-208ENST00000461520 MTG1Q9BT17 334 aaPredicted RBP8.41□□□□□ -1.06
USP54-208ENST00000461520 TRPV6Q9H1D0 765 aa8.41□□□□□ -1.06
USP54-208ENST00000461520 IL25Q9H293 177 aa8.41□□□□□ -1.06
USP54-208ENST00000461520 JMJD4Q9H9V9 463 aa8.41□□□□□ -1.06
USP54-208ENST00000461520 MRPL11Q9Y3B7 192 aaKnown RBP8.41□□□□□ -1.06
USP54-208ENST00000461520 GBF1Q92538 1859 aa8.4□□□□□ -1.06
USP54-208ENST00000461520 UMODL1Q5DID0 1318 aa8.4□□□□□ -1.06
USP54-208ENST00000461520 DHX16O60231 1041 aaKnown RBP8.4□□□□□ -1.06
USP54-208ENST00000461520 MYL3P08590 195 aa8.4□□□□□ -1.06
USP54-208ENST00000461520 INHBBP09529 407 aa8.4□□□□□ -1.06
USP54-208ENST00000461520 CCL23P55773 120 aa8.4□□□□□ -1.06
USP54-208ENST00000461520 POU4F1Q01851 419 aa8.4□□□□□ -1.06
USP54-208ENST00000461520 SEC23AQ15436 765 aa8.4□□□□□ -1.06
USP54-208ENST00000461520 PPP2R5EQ16537 467 aa8.4□□□□□ -1.06
USP54-208ENST00000461520 NFRKBQ6P4R8 1299 aa8.4□□□□□ -1.06
USP54-208ENST00000461520 RPTNQ6XPR3 784 aa8.4□□□□□ -1.06
USP54-208ENST00000461520 TTLL10Q6ZVT0 673 aa8.4□□□□□ -1.06
USP54-208ENST00000461520 SAMD3Q8N6K7 520 aa8.4□□□□□ -1.06
USP54-208ENST00000461520 MZB1Q8WU39 189 aa8.4□□□□□ -1.06
USP54-208ENST00000461520 TBC1D5Q92609 795 aa8.4□□□□□ -1.06
USP54-208ENST00000461520 TIFAQ96CG3 184 aa8.4□□□□□ -1.06
USP54-208ENST00000461520 TAAR1Q96RJ0 339 aa8.4□□□□□ -1.06
USP54-208ENST00000461520 RMDN3Q96TC7 470 aa8.4□□□□□ -1.06
USP54-208ENST00000461520 AMNQ9BXJ7 453 aa8.4□□□□□ -1.06
USP54-208ENST00000461520 WNT8AQ9H1J5 351 aa8.4□□□□□ -1.06
USP54-208ENST00000461520 MAP3K20Q9NYL2 800 aaKnown RBP8.4□□□□□ -1.06
USP54-208ENST00000461520 SLC12A7Q9Y666 1083 aa8.4□□□□□ -1.06
USP54-208ENST00000461520 NCOR1O75376 2440 aa8.4□□□□□ -1.07
USP54-208ENST00000461520 ERICH2A1L162 156 aa8.39□□□□□ -1.07
USP54-208ENST00000461520 KRTAP9-7A8MTY7 169 aa8.39□□□□□ -1.07
USP54-208ENST00000461520 GRXCR1A8MXD5 290 aa8.39□□□□□ -1.07
USP54-208ENST00000461520 KLRF2D3W0D1 207 aa8.39□□□□□ -1.07
USP54-208ENST00000461520 RFXAPO00287 272 aa8.39□□□□□ -1.07
USP54-208ENST00000461520 ZBTB5O15062 677 aa8.39□□□□□ -1.07
USP54-208ENST00000461520 ARIH2O95376 493 aa8.39□□□□□ -1.07
USP54-208ENST00000461520 EPHX1P07099 455 aa8.39□□□□□ -1.07
USP54-208ENST00000461520 PFKMP08237 780 aa8.39□□□□□ -1.07
USP54-208ENST00000461520 CYP21A2P08686 494 aa8.39□□□□□ -1.07
USP54-208ENST00000461520 CHMLP26374 656 aa8.39□□□□□ -1.07
USP54-208ENST00000461520 SLC7A5Q01650 507 aa8.39□□□□□ -1.07
USP54-208ENST00000461520 GHRHRQ02643 423 aa8.39□□□□□ -1.07
USP54-208ENST00000461520 TRAF1Q13077 416 aa8.39□□□□□ -1.07
USP54-208ENST00000461520 RAB30Q15771 203 aa8.39□□□□□ -1.07
USP54-208ENST00000461520 STXBP2Q15833 593 aa8.39□□□□□ -1.07
USP54-208ENST00000461520 ARHGEF16Q5VV41 709 aa8.39□□□□□ -1.07
USP54-208ENST00000461520 HEATR6Q6AI08 1181 aaKnown RBP8.39□□□□□ -1.07
USP54-208ENST00000461520 CCDC62Q6P9F0 684 aa8.39□□□□□ -1.07
USP54-208ENST00000461520 CYP2R1Q6VVX0 501 aa8.39□□□□□ -1.07
USP54-208ENST00000461520 CYB5R4Q7L1T6 521 aa8.39□□□□□ -1.07
USP54-208ENST00000461520 ADAT2Q7Z6V5 191 aaKnown RBP8.39□□□□□ -1.07
USP54-208ENST00000461520 CPLX3Q8WVH0 158 aa8.39□□□□□ -1.07
USP54-208ENST00000461520 COPS5Q92905 334 aa8.39□□□□□ -1.07
USP54-208ENST00000461520 MTMR8Q96EF0 704 aa8.39□□□□□ -1.07
USP54-208ENST00000461520 SHDQ96IW2 340 aa8.39□□□□□ -1.07
USP54-208ENST00000461520 PTCHD1Q96NR3 888 aa8.39□□□□□ -1.07
USP54-208ENST00000461520 MCMBPQ9BTE3 642 aa8.39□□□□□ -1.07
USP54-208ENST00000461520 KLHL25Q9H0H3 589 aa8.39□□□□□ -1.07
USP54-208ENST00000461520 ACBD3Q9H3P7 528 aa8.39□□□□□ -1.07
USP54-208ENST00000461520 VAT1LQ9HCJ6 419 aa8.39□□□□□ -1.07
USP54-208ENST00000461520 TRMT13Q9NUP7 481 aaKnown RBP8.39□□□□□ -1.07
USP54-208ENST00000461520 WHRNQ9P202 907 aa8.39□□□□□ -1.07
USP54-208ENST00000461520 COL20A1Q9P218 1284 aa8.39□□□□□ -1.07
USP54-208ENST00000461520 MAD2L2Q9UI95 211 aa8.39□□□□□ -1.07
USP54-208ENST00000461520 EIF3JO75822 258 aaKnown RBP8.38□□□□□ -1.07
USP54-208ENST00000461520 CFBP00751 764 aa8.38□□□□□ -1.07
USP54-208ENST00000461520 GH1P01241 217 aa8.38□□□□□ -1.07
USP54-208ENST00000461520 MMP3P08254 477 aa8.38□□□□□ -1.07
USP54-208ENST00000461520 CYP2C9P11712 490 aa8.38□□□□□ -1.07
USP54-208ENST00000461520 BMP7P18075 431 aa8.38□□□□□ -1.07
USP54-208ENST00000461520 RFC2P35250 354 aa8.38□□□□□ -1.07
USP54-208ENST00000461520 HSD17B4P51659 736 aa8.38□□□□□ -1.07
USP54-208ENST00000461520 NCKAP1LP55160 1127 aa8.38□□□□□ -1.07
USP54-208ENST00000461520 ARHGAP1Q07960 439 aa8.38□□□□□ -1.07
USP54-208ENST00000461520 CBX2Q14781 532 aaPredicted RBP8.38□□□□□ -1.07
USP54-208ENST00000461520 FAM47CQ5HY64 1035 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms