RNA–Protein interactions for RNA: ENST00000452047.1

CPSF4-208, Transcript of cleavage and polyadenylation specific factor 4, human

TSL 3

Gene CPSF4, Length 687 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF4-208	ENST00000452047	DNAJC19	Q96DA6	116 aa		13.58	□□□□□ -0.24
CPSF4-208	ENST00000452047	KIF12	Q96FN5	646 aa		13.58	□□□□□ -0.24
CPSF4-208	ENST00000452047	MSTO1	Q9BUK6	570 aa		13.58	□□□□□ -0.24
CPSF4-208	ENST00000452047	STRA6	Q9BX79	667 aa		13.58	□□□□□ -0.24
CPSF4-208	ENST00000452047	CPSF3	Q9UKF6	684 aa	Known RBP	13.58	□□□□□ -0.24
CPSF4-208	ENST00000452047	UBQLN1	Q9UMX0	589 aa	Known RBP	13.58	□□□□□ -0.24
CPSF4-208	ENST00000452047	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	13.58	□□□□□ -0.24
CPSF4-208	ENST00000452047	STYXL1	Q9Y6J8	313 aa		13.58	□□□□□ -0.24
CPSF4-208	ENST00000452047	ARHGEF37	A1IGU5	675 aa		13.57	□□□□□ -0.24
CPSF4-208	ENST00000452047	ANKRD63	C9JTQ0	380 aa		13.57	□□□□□ -0.24
CPSF4-208	ENST00000452047		M0QZQ0	153 aa		13.57	□□□□□ -0.24
CPSF4-208	ENST00000452047	ATF2	P15336	505 aa		13.57	□□□□□ -0.24
CPSF4-208	ENST00000452047	CWF19L1	Q69YN2	538 aa	Known RBP	13.57	□□□□□ -0.24
CPSF4-208	ENST00000452047	ZNF720	Q7Z2F6	126 aa		13.57	□□□□□ -0.24
CPSF4-208	ENST00000452047	SLC44A3	Q8N4M1	653 aa		13.57	□□□□□ -0.24
CPSF4-208	ENST00000452047	TMEM105	Q8N8V8	129 aa		13.57	□□□□□ -0.24
CPSF4-208	ENST00000452047	TSPAN18	Q96SJ8	248 aa		13.57	□□□□□ -0.24
CPSF4-208	ENST00000452047	IKZF4	Q9H2S9	585 aa		13.57	□□□□□ -0.24
CPSF4-208	ENST00000452047	RPF1	Q9H9Y2	349 aa	Known RBP	13.57	□□□□□ -0.24
CPSF4-208	ENST00000452047	HCFC1R1	Q9NWW0	138 aa		13.57	□□□□□ -0.24
CPSF4-208	ENST00000452047	SEL1L	Q9UBV2	794 aa		13.57	□□□□□ -0.24
CPSF4-208	ENST00000452047	FBXL5	Q9UKA1	691 aa		13.57	□□□□□ -0.24
CPSF4-208	ENST00000452047	CDH7	Q9ULB5	785 aa		13.57	□□□□□ -0.24
CPSF4-208	ENST00000452047	PCDHB8	Q9UN66	801 aa		13.57	□□□□□ -0.24
CPSF4-208	ENST00000452047	POLI	Q9UNA4	740 aa		13.57	□□□□□ -0.24
CPSF4-208	ENST00000452047	ZFP37	Q9Y6Q3	630 aa	Predicted RBP	13.57	□□□□□ -0.24
CPSF4-208	ENST00000452047	FRMD3	A2A2Y4	597 aa		13.56	□□□□□ -0.24
CPSF4-208	ENST00000452047		H7C4K7	107 aa		13.56	□□□□□ -0.24
CPSF4-208	ENST00000452047	NPR3	P17342	541 aa		13.56	□□□□□ -0.24
CPSF4-208	ENST00000452047	GUCY2F	P51841	1108 aa		13.56	□□□□□ -0.24
CPSF4-208	ENST00000452047	PTPN5	P54829	565 aa		13.56	□□□□□ -0.24
CPSF4-208	ENST00000452047	CTXN3	Q4LDR2	81 aa		13.56	□□□□□ -0.24
CPSF4-208	ENST00000452047	SPATA1	Q5VX52	437 aa		13.56	□□□□□ -0.24
CPSF4-208	ENST00000452047	ASTL	Q6HA08	431 aa	Predicted RBP	13.56	□□□□□ -0.24
CPSF4-208	ENST00000452047	JADE1	Q6IE81	842 aa		13.56	□□□□□ -0.24
CPSF4-208	ENST00000452047	ZNF280D	Q6N043	979 aa		13.56	□□□□□ -0.24
CPSF4-208	ENST00000452047	CCDC73	Q6ZRK6	1079 aa		13.56	□□□□□ -0.24
CPSF4-208	ENST00000452047	SV2B	Q7L1I2	683 aa		13.56	□□□□□ -0.24
CPSF4-208	ENST00000452047	TCEAL8	Q8IYN2	117 aa		13.56	□□□□□ -0.24
CPSF4-208	ENST00000452047	LINC00301	Q8NCQ3	95 aa		13.56	□□□□□ -0.24
CPSF4-208	ENST00000452047	APPL2	Q8NEU8	664 aa		13.56	□□□□□ -0.24
CPSF4-208	ENST00000452047	ITFG1	Q8TB96	612 aa		13.56	□□□□□ -0.24
CPSF4-208	ENST00000452047	FGF13	Q92913	245 aa		13.56	□□□□□ -0.24
CPSF4-208	ENST00000452047	HVCN1	Q96D96	273 aa		13.56	□□□□□ -0.24
CPSF4-208	ENST00000452047	OLFML3	Q9NRN5	406 aa		13.56	□□□□□ -0.24
CPSF4-208	ENST00000452047	DNMT3B	Q9UBC3	853 aa	Known RBP	13.56	□□□□□ -0.24
CPSF4-208	ENST00000452047	NUMBL	Q9Y6R0	609 aa		13.56	□□□□□ -0.24
CPSF4-208	ENST00000452047	SCN1A	P35498	2009 aa		13.56	□□□□□ -0.24
CPSF4-208	ENST00000452047	PPEF2	O14830	753 aa		13.55	□□□□□ -0.24
CPSF4-208	ENST00000452047	XPOT	O43592	962 aa	Known RBP	13.55	□□□□□ -0.24
CPSF4-208	ENST00000452047	OAZ2	O95190	189 aa		13.55	□□□□□ -0.24
CPSF4-208	ENST00000452047	SEC24A	O95486	1093 aa		13.55	□□□□□ -0.24
CPSF4-208	ENST00000452047	NFIC	P08651	508 aa		13.55	□□□□□ -0.24
CPSF4-208	ENST00000452047	SRF	P11831	508 aa		13.55	□□□□□ -0.24
CPSF4-208	ENST00000452047	GAP43	P17677	238 aa		13.55	□□□□□ -0.24
CPSF4-208	ENST00000452047	ADSS	P30520	456 aa		13.55	□□□□□ -0.24
CPSF4-208	ENST00000452047	STAT6	P42226	847 aa		13.55	□□□□□ -0.24
CPSF4-208	ENST00000452047	ACOT2	P49753	483 aa		13.55	□□□□□ -0.24
CPSF4-208	ENST00000452047	CLCN5	P51795	746 aa		13.55	□□□□□ -0.24
CPSF4-208	ENST00000452047	CASP5	P51878	434 aa		13.55	□□□□□ -0.24
CPSF4-208	ENST00000452047	NUBP1	P53384	320 aa		13.55	□□□□□ -0.24
CPSF4-208	ENST00000452047	KCNA1	Q09470	495 aa		13.55	□□□□□ -0.24
CPSF4-208	ENST00000452047	PABPC1L	Q4VXU2	614 aa	Known RBP	13.55	□□□□□ -0.24
CPSF4-208	ENST00000452047	TPGS2	Q68CL5	300 aa		13.55	□□□□□ -0.24
CPSF4-208	ENST00000452047	ADAL	Q6DHV7	355 aa		13.55	□□□□□ -0.24
CPSF4-208	ENST00000452047	CD302	Q8IX05	232 aa		13.55	□□□□□ -0.24
CPSF4-208	ENST00000452047	NPAS3	Q8IXF0	933 aa		13.55	□□□□□ -0.24
CPSF4-208	ENST00000452047	FGF14	Q92915	247 aa		13.55	□□□□□ -0.24
CPSF4-208	ENST00000452047	MFSD1	Q9H3U5	465 aa		13.55	□□□□□ -0.24
CPSF4-208	ENST00000452047	MRPL44	Q9H9J2	332 aa	Known RBP	13.55	□□□□□ -0.24
CPSF4-208	ENST00000452047	AVEN	Q9NQS1	362 aa	Predicted RBP	13.55	□□□□□ -0.24
CPSF4-208	ENST00000452047	WNT16	Q9UBV4	365 aa		13.55	□□□□□ -0.24
CPSF4-208	ENST00000452047	AGO2	Q9UKV8	859 aa	Known RBP	13.55	□□□□□ -0.24
CPSF4-208	ENST00000452047	KCNH3	Q9ULD8	1083 aa		13.55	□□□□□ -0.24
CPSF4-208	ENST00000452047	DERA	Q9Y315	318 aa		13.55	□□□□□ -0.24
CPSF4-208	ENST00000452047	CFAP54	Q96N23	3096 aa		13.54	□□□□□ -0.24
CPSF4-208	ENST00000452047	KRBA1	A5PL33	1030 aa		13.54	□□□□□ -0.24
CPSF4-208	ENST00000452047	PRRG1	O14668	218 aa		13.54	□□□□□ -0.24
CPSF4-208	ENST00000452047	GALR2	O43603	387 aa	Predicted RBP	13.54	□□□□□ -0.24
CPSF4-208	ENST00000452047	PPP6R2	O75170	966 aa		13.54	□□□□□ -0.24
CPSF4-208	ENST00000452047	RHO	P08100	348 aa		13.54	□□□□□ -0.24
CPSF4-208	ENST00000452047	CFH	P08603	1231 aa		13.54	□□□□□ -0.24
CPSF4-208	ENST00000452047	ARPP19	P56211	112 aa		13.54	□□□□□ -0.24
CPSF4-208	ENST00000452047	LILRA4	P59901	499 aa		13.54	□□□□□ -0.24
CPSF4-208	ENST00000452047	POU5F1	Q01860	360 aa	Known RBP	13.54	□□□□□ -0.24
CPSF4-208	ENST00000452047	YWHAH	Q04917	246 aa	Predicted RBP	13.54	□□□□□ -0.24
CPSF4-208	ENST00000452047	TMEM132D	Q14C87	1099 aa		13.54	□□□□□ -0.24
CPSF4-208	ENST00000452047	STK38	Q15208	465 aa		13.54	□□□□□ -0.24
CPSF4-208	ENST00000452047	SLC5A9	Q2M3M2	681 aa		13.54	□□□□□ -0.24
CPSF4-208	ENST00000452047	SLFN12L	Q6IEE8	588 aa		13.54	□□□□□ -0.24
CPSF4-208	ENST00000452047	PARM1	Q6UWI2	310 aa		13.54	□□□□□ -0.24
CPSF4-208	ENST00000452047	CRELD2	Q6UXH1	353 aa	Predicted RBP	13.54	□□□□□ -0.24
CPSF4-208	ENST00000452047	SIX5	Q8N196	739 aa		13.54	□□□□□ -0.24
CPSF4-208	ENST00000452047	ST13P5	Q8NFI4	369 aa	Predicted RBP	13.54	□□□□□ -0.24
CPSF4-208	ENST00000452047	BEST2	Q8NFU1	509 aa		13.54	□□□□□ -0.24
CPSF4-208	ENST00000452047	FAM212A	Q96EL1	285 aa		13.54	□□□□□ -0.24
CPSF4-208	ENST00000452047	PHOX2B	Q99453	314 aa		13.54	□□□□□ -0.24
CPSF4-208	ENST00000452047	RPP25	Q9BUL9	199 aa	Known RBP	13.54	□□□□□ -0.24
CPSF4-208	ENST00000452047	FGFBP2	Q9BYJ0	223 aa		13.54	□□□□□ -0.24
CPSF4-208	ENST00000452047	PANK2	Q9BZ23	570 aa		13.54	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms