RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 SBDSQ9Y3A5 250 aaKnown RBP eCLIP17.06■□□□□ 0.32
SHQ1-202ENST00000444040 NUB1Q9Y5A7 615 aa17.06■□□□□ 0.32
SHQ1-202ENST00000444040 PCDHB4Q9Y5E5 795 aa17.06■□□□□ 0.32
SHQ1-202ENST00000444040 BRCA1P38398 1863 aaKnown RBP17.05■□□□□ 0.32
SHQ1-202ENST00000444040 CLTAP09496 248 aa17.05■□□□□ 0.32
SHQ1-202ENST00000444040 ITIH2P19823 946 aa17.05■□□□□ 0.32
SHQ1-202ENST00000444040 DRD4P21917 467 aa17.05■□□□□ 0.32
SHQ1-202ENST00000444040 CDR1P51861 262 aa17.05■□□□□ 0.32
SHQ1-202ENST00000444040 MAMLD1Q13495 774 aa17.05■□□□□ 0.32
SHQ1-202ENST00000444040 AUHQ13825 339 aaKnown RBP17.05■□□□□ 0.32
SHQ1-202ENST00000444040 SCARA3Q6AZY7 606 aa17.05■□□□□ 0.32
SHQ1-202ENST00000444040 SYDE1Q6ZW31 735 aaPredicted RBP17.05■□□□□ 0.32
SHQ1-202ENST00000444040 APOBEC3FQ8IUX4 373 aaKnown RBP17.05■□□□□ 0.32
SHQ1-202ENST00000444040 PASD1Q8IV76 773 aa17.05■□□□□ 0.32
SHQ1-202ENST00000444040 ATXN2LQ8WWM7 1075 aaKnown RBP17.05■□□□□ 0.32
SHQ1-202ENST00000444040 SLC7A3Q8WY07 619 aa17.05■□□□□ 0.32
SHQ1-202ENST00000444040 SEC16BQ96JE7 1060 aa17.05■□□□□ 0.32
SHQ1-202ENST00000444040 PCYT2Q99447 389 aa17.05■□□□□ 0.32
SHQ1-202ENST00000444040 MSTO1Q9BUK6 570 aa17.05■□□□□ 0.32
SHQ1-202ENST00000444040 R3HDM2Q9Y2K5 976 aaKnown RBP17.05■□□□□ 0.32
SHQ1-202ENST00000444040 LOC285556D6RIA3 1793 aa17.05■□□□□ 0.32
SHQ1-202ENST00000444040 SIP14410 1827 aa17.05■□□□□ 0.32
SHQ1-202ENST00000444040 GNA15P30679 374 aa17.05■□□□□ 0.32
SHQ1-202ENST00000444040 TARBP2Q15633 366 aaKnown RBP17.05■□□□□ 0.32
SHQ1-202ENST00000444040 PLEKHA7Q6IQ23 1121 aa17.05■□□□□ 0.32
SHQ1-202ENST00000444040 MFSD5Q6N075 450 aa17.05■□□□□ 0.32
SHQ1-202ENST00000444040 PHF13Q86YI8 300 aaPredicted RBP17.05■□□□□ 0.32
SHQ1-202ENST00000444040 TMEM134Q9H6X4 195 aa17.05■□□□□ 0.32
SHQ1-202ENST00000444040 ADAM22Q9P0K1 906 aa17.05■□□□□ 0.32
SHQ1-202ENST00000444040 ANKFY1Q9P2R3 1169 aa17.05■□□□□ 0.32
SHQ1-202ENST00000444040 NEU2Q9Y3R4 380 aa17.05■□□□□ 0.32
SHQ1-202ENST00000444040 RASGRF2O14827 1237 aa17.04■□□□□ 0.32
SHQ1-202ENST00000444040 ZBTB7AO95365 584 aa17.04■□□□□ 0.32
SHQ1-202ENST00000444040 MAN1A1P33908 653 aa17.04■□□□□ 0.32
SHQ1-202ENST00000444040 CHKAP35790 457 aa17.04■□□□□ 0.32
SHQ1-202ENST00000444040 SLCO1A2P46721 670 aa17.04■□□□□ 0.32
SHQ1-202ENST00000444040 TAS2R40P59535 323 aa17.04■□□□□ 0.32
SHQ1-202ENST00000444040 LIN9Q5TKA1 542 aa17.04■□□□□ 0.32
SHQ1-202ENST00000444040 CHADLQ6NUI6 762 aa17.04■□□□□ 0.32
SHQ1-202ENST00000444040 SEPT14Q6ZU15 432 aa17.04■□□□□ 0.32
SHQ1-202ENST00000444040 CCDC25Q86WR0 208 aa17.04■□□□□ 0.32
SHQ1-202ENST00000444040 CHST13Q8NET6 341 aa17.04■□□□□ 0.32
SHQ1-202ENST00000444040 ZNF317Q96PQ6 595 aaPredicted RBP17.04■□□□□ 0.32
SHQ1-202ENST00000444040 ASIC3Q9UHC3 531 aa17.04■□□□□ 0.32
SHQ1-202ENST00000444040 MYH9P35579 1960 aaKnown RBP17.04■□□□□ 0.32
SHQ1-202ENST00000444040 SSC5DA1L4H1 1573 aa17.04■□□□□ 0.32
SHQ1-202ENST00000444040 GSTTP1A0A1W2PQM5 241 aa17.04■□□□□ 0.32
SHQ1-202ENST00000444040 PSTPIP1O43586 416 aa17.04■□□□□ 0.32
SHQ1-202ENST00000444040 RALAP11233 206 aa17.04■□□□□ 0.32
SHQ1-202ENST00000444040 NOP14P78316 857 aaKnown RBP17.04■□□□□ 0.32
SHQ1-202ENST00000444040 NOL9Q5SY16 702 aaKnown RBP17.04■□□□□ 0.32
SHQ1-202ENST00000444040 RBBP8NLQ8NC74 664 aaPredicted RBP17.04■□□□□ 0.32
SHQ1-202ENST00000444040 CHMP6Q96FZ7 201 aa17.04■□□□□ 0.32
SHQ1-202ENST00000444040 SNF8Q96H20 258 aa17.04■□□□□ 0.32
SHQ1-202ENST00000444040 DDX23Q9BUQ8 820 aaKnown RBP17.04■□□□□ 0.32
SHQ1-202ENST00000444040 ROPN1BQ9BZX4 212 aaPredicted RBP17.04■□□□□ 0.32
SHQ1-202ENST00000444040 ROPN1Q9HAT0 212 aaPredicted RBP17.04■□□□□ 0.32
SHQ1-202ENST00000444040 LTBP3Q9NS15 1303 aa17.04■□□□□ 0.32
SHQ1-202ENST00000444040 UBA1P22314 1058 aaKnown RBP17.03■□□□□ 0.32
SHQ1-202ENST00000444040 TBXAS1P24557 533 aaPredicted RBP17.03■□□□□ 0.32
SHQ1-202ENST00000444040 SSTR3P32745 418 aaPredicted RBP17.03■□□□□ 0.32
SHQ1-202ENST00000444040 CAPSQ13938 189 aa17.03■□□□□ 0.32
SHQ1-202ENST00000444040 SH3D19Q5HYK7 790 aa17.03■□□□□ 0.32
SHQ1-202ENST00000444040 RHOT1Q8IXI2 618 aa17.03■□□□□ 0.32
SHQ1-202ENST00000444040 ATL2Q8NHH9 583 aa17.03■□□□□ 0.32
SHQ1-202ENST00000444040 TRPM4Q8TD43 1214 aa17.03■□□□□ 0.32
SHQ1-202ENST00000444040 GRK7Q8WTQ7 553 aa17.03■□□□□ 0.32
SHQ1-202ENST00000444040 SELENOSQ9BQE4 189 aa17.03■□□□□ 0.32
SHQ1-202ENST00000444040 MRPL47Q9HD33 250 aaKnown RBP17.03■□□□□ 0.32
SHQ1-202ENST00000444040 CAPN7Q9Y6W3 813 aa17.03■□□□□ 0.32
SHQ1-202ENST00000444040 SEZ6Q53EL9 994 aa17.03■□□□□ 0.32
SHQ1-202ENST00000444040 ANKS1BQ7Z6G8 1248 aa17.03■□□□□ 0.32
SHQ1-202ENST00000444040 KATNAL2Q8IYT4 538 aa17.03■□□□□ 0.32
SHQ1-202ENST00000444040 UBR7Q8N806 425 aa17.03■□□□□ 0.32
SHQ1-202ENST00000444040 HEMGNQ9BXL5 484 aa17.03■□□□□ 0.32
SHQ1-202ENST00000444040 TTLL13PA6NNM8 815 aa17.02■□□□□ 0.32
SHQ1-202ENST00000444040 ADCY3O60266 1144 aa17.02■□□□□ 0.32
SHQ1-202ENST00000444040 PEX10O60683 326 aa17.02■□□□□ 0.32
SHQ1-202ENST00000444040 FARP2O94887 1054 aaPredicted RBP17.02■□□□□ 0.32
SHQ1-202ENST00000444040 RFC5P40937 340 aa17.02■□□□□ 0.32
SHQ1-202ENST00000444040 ALDH5A1P51649 535 aaPredicted RBP17.02■□□□□ 0.32
SHQ1-202ENST00000444040 ZNF132P52740 706 aa17.02■□□□□ 0.32
SHQ1-202ENST00000444040 C1QBPQ07021 282 aaKnown RBP17.02■□□□□ 0.32
SHQ1-202ENST00000444040 TRIP13Q15645 432 aaPredicted RBP17.02■□□□□ 0.32
SHQ1-202ENST00000444040 RNF187Q5TA31 235 aaPredicted RBP17.02■□□□□ 0.32
SHQ1-202ENST00000444040 MMS22LQ6ZRQ5 1243 aa17.02■□□□□ 0.32
SHQ1-202ENST00000444040 ANKRD35Q8N283 1001 aa17.02■□□□□ 0.32
SHQ1-202ENST00000444040 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.02■□□□□ 0.32
SHQ1-202ENST00000444040 GAS8O95995 478 aa17.02■□□□□ 0.32
SHQ1-202ENST00000444040 ITGA8P53708 1063 aa17.02■□□□□ 0.32
SHQ1-202ENST00000444040 DRP2Q13474 957 aa17.02■□□□□ 0.32
SHQ1-202ENST00000444040 NCOA4Q13772 614 aa17.02■□□□□ 0.32
SHQ1-202ENST00000444040 CCNG2Q16589 344 aa17.02■□□□□ 0.32
SHQ1-202ENST00000444040 CPLX4Q7Z7G2 160 aa17.02■□□□□ 0.32
SHQ1-202ENST00000444040 OSBPL7Q9BZF2 842 aa17.02■□□□□ 0.32
SHQ1-202ENST00000444040 TLR3O15455 904 aaKnown RBP17.02■□□□□ 0.31
SHQ1-202ENST00000444040 FAM189A1O60320 539 aa17.02■□□□□ 0.31
SHQ1-202ENST00000444040 CST3P01034 146 aaPredicted RBP17.02■□□□□ 0.31
SHQ1-202ENST00000444040 GKAP1Q5VSY0 366 aaPredicted RBP17.02■□□□□ 0.31
SHQ1-202ENST00000444040 FBXW10Q5XX13 1052 aa17.02■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms