RNA–Protein interactions for RNA: ENST00000439235.5

CHD3-204, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,263 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-204ENST00000439235 LRMPQ12912 555 aa22.27■■□□□ 1.16
CHD3-204ENST00000439235 MYO1EQ12965 1108 aa22.27■■□□□ 1.16
CHD3-204ENST00000439235 TBX2Q13207 712 aaPredicted RBP22.27■■□□□ 1.16
CHD3-204ENST00000439235 TUSC3Q13454 348 aa22.27■■□□□ 1.16
CHD3-204ENST00000439235 PDCD11Q14690 1871 aaKnown RBP22.27■■□□□ 1.16
CHD3-204ENST00000439235 NAB2Q15742 525 aa22.27■■□□□ 1.16
CHD3-204ENST00000439235 TMEM240Q5SV17 173 aa22.27■■□□□ 1.16
CHD3-204ENST00000439235 C9orf57Q5W0N0 161 aa22.27■■□□□ 1.16
CHD3-204ENST00000439235 C16orf59Q7L2K0 433 aa22.27■■□□□ 1.16
CHD3-204ENST00000439235 ZNF397Q8NF99 534 aaPredicted RBP22.27■■□□□ 1.16
CHD3-204ENST00000439235 TOP1MTQ969P6 601 aa22.27■■□□□ 1.16
CHD3-204ENST00000439235 PPP1R9BQ96SB3 815 aa22.27■■□□□ 1.16
CHD3-204ENST00000439235 PI4K2AQ9BTU6 479 aa22.27■■□□□ 1.16
CHD3-204ENST00000439235 TTYH3Q9C0H2 523 aa22.27■■□□□ 1.16
CHD3-204ENST00000439235 ANO9A1A5B4 782 aa22.26■■□□□ 1.15
CHD3-204ENST00000439235 NOL4O94818 638 aa22.26■■□□□ 1.15
CHD3-204ENST00000439235 RPL9P32969 192 aaKnown RBP22.26■■□□□ 1.15
CHD3-204ENST00000439235 GSDMDP57764 484 aa22.26■■□□□ 1.15
CHD3-204ENST00000439235 POLR2FP61218 127 aaKnown RBP22.26■■□□□ 1.15
CHD3-204ENST00000439235 DEFB103AP81534 67 aa22.26■■□□□ 1.15
CHD3-204ENST00000439235 RNASELQ05823 741 aaKnown RBP22.26■■□□□ 1.15
CHD3-204ENST00000439235 DPY19L2P1Q6NXN4 242 aa22.26■■□□□ 1.15
CHD3-204ENST00000439235 ENOSF1Q7L5Y1 443 aa22.26■■□□□ 1.15
CHD3-204ENST00000439235 DDX27Q96GQ7 796 aaKnown RBP22.26■■□□□ 1.15
CHD3-204ENST00000439235 HPDLQ96IR7 371 aa22.26■■□□□ 1.15
CHD3-204ENST00000439235 FAXDC2Q96IV6 333 aa22.26■■□□□ 1.15
CHD3-204ENST00000439235 CASD1Q96PB1 797 aa22.26■■□□□ 1.15
CHD3-204ENST00000439235 FAM193BQ96PV7 902 aaPredicted RBP22.26■■□□□ 1.15
CHD3-204ENST00000439235 VRTNQ9H8Y1 702 aa22.26■■□□□ 1.15
CHD3-204ENST00000439235 GOLGA2P5Q9HBQ8 144 aa22.26■■□□□ 1.15
CHD3-204ENST00000439235 TBC1D13Q9NVG8 400 aa22.26■■□□□ 1.15
CHD3-204ENST00000439235 CAPN11Q9UMQ6 739 aa22.26■■□□□ 1.15
CHD3-204ENST00000439235 TBKBP1A7MCY6 615 aa22.25■■□□□ 1.15
CHD3-204ENST00000439235 EPHB6O15197 1021 aa22.25■■□□□ 1.15
CHD3-204ENST00000439235 UPP2O95045 317 aa22.25■■□□□ 1.15
CHD3-204ENST00000439235 PTMAP06454 111 aaKnown RBP22.25■■□□□ 1.15
CHD3-204ENST00000439235 P4HA1P13674 534 aa22.25■■□□□ 1.15
CHD3-204ENST00000439235 TBXAS1P24557 533 aaPredicted RBP22.25■■□□□ 1.15
CHD3-204ENST00000439235 EPHB4P54760 987 aa22.25■■□□□ 1.15
CHD3-204ENST00000439235 MFAP3P55082 362 aa22.25■■□□□ 1.15
CHD3-204ENST00000439235 APBA1Q02410 837 aa22.25■■□□□ 1.15
CHD3-204ENST00000439235 GCNT1Q02742 428 aa22.25■■□□□ 1.15
CHD3-204ENST00000439235 ZNF667Q5HYK9 610 aa22.25■■□□□ 1.15
CHD3-204ENST00000439235 PHLDB3Q6NSJ2 640 aa22.25■■□□□ 1.15
CHD3-204ENST00000439235 CNGA4Q8IV77 575 aa22.25■■□□□ 1.15
CHD3-204ENST00000439235 ARHGEF19Q8IW93 802 aa22.25■■□□□ 1.15
CHD3-204ENST00000439235 LRRC43Q8N309 656 aa22.25■■□□□ 1.15
CHD3-204ENST00000439235 PPM1KQ8N3J5 372 aa22.25■■□□□ 1.15
CHD3-204ENST00000439235 HERVK_113Q902F9 699 aa22.25■■□□□ 1.15
CHD3-204ENST00000439235 BUD13Q9BRD0 619 aaKnown RBP eCLIP22.25■■□□□ 1.151e-6■□□□□ 9.2
CHD3-204ENST00000439235 NIF3L1Q9GZT8 377 aa22.25■■□□□ 1.15
CHD3-204ENST00000439235 XYLT2Q9H1B5 865 aa22.25■■□□□ 1.15
CHD3-204ENST00000439235 DNAJC12Q9UKB3 198 aa22.25■■□□□ 1.15
CHD3-204ENST00000439235 LUC7L2Q9Y383 392 aaKnown RBP22.25■■□□□ 1.15
CHD3-204ENST00000439235 FHOD1Q9Y613 1164 aa22.25■■□□□ 1.15
CHD3-204ENST00000439235 AKR1B15C9JRZ8 316 aaPredicted RBP22.24■■□□□ 1.15
CHD3-204ENST00000439235 PODXLO00592 558 aa22.24■■□□□ 1.15
CHD3-204ENST00000439235 PIRO00625 290 aa22.24■■□□□ 1.15
CHD3-204ENST00000439235 MFAP3LO75121 409 aa22.24■■□□□ 1.15
CHD3-204ENST00000439235 LRRN2O75325 713 aa22.24■■□□□ 1.15
CHD3-204ENST00000439235 DGKIO75912 1065 aa22.24■■□□□ 1.15
CHD3-204ENST00000439235 CASP14P31944 242 aa22.24■■□□□ 1.15
CHD3-204ENST00000439235 TAF6P49848 677 aa22.24■■□□□ 1.15
CHD3-204ENST00000439235 DSC1Q08554 894 aa22.24■■□□□ 1.15
CHD3-204ENST00000439235 SV2CQ496J9 727 aa22.24■■□□□ 1.15
CHD3-204ENST00000439235 IQCEQ6IPM2 695 aa22.24■■□□□ 1.15
CHD3-204ENST00000439235 CPLX3Q8WVH0 158 aa22.24■■□□□ 1.15
CHD3-204ENST00000439235 SPAG5Q96R06 1193 aa22.24■■□□□ 1.15
CHD3-204ENST00000439235 UBE2TQ9NPD8 197 aaPredicted RBP22.24■■□□□ 1.15
CHD3-204ENST00000439235 NLRC4Q9NPP4 1024 aa22.24■■□□□ 1.15
CHD3-204ENST00000439235 UTP3Q9NQZ2 479 aaKnown RBP eCLIP22.24■■□□□ 1.15
CHD3-204ENST00000439235 TTC3P53804 2025 aa22.23■■□□□ 1.15
CHD3-204ENST00000439235 CASTOR2A6NHX0 329 aa22.23■■□□□ 1.15
CHD3-204ENST00000439235 PAX3P23760 479 aa22.23■■□□□ 1.15
CHD3-204ENST00000439235 GATMP50440 423 aa22.23■■□□□ 1.15
CHD3-204ENST00000439235 FXR1P51114 621 aaKnown RBP eCLIP22.23■■□□□ 1.15
CHD3-204ENST00000439235 TNNC1P63316 161 aa22.23■■□□□ 1.15
CHD3-204ENST00000439235 ZBED6P86452 979 aa22.23■■□□□ 1.15
CHD3-204ENST00000439235 CUL2Q13617 745 aa22.23■■□□□ 1.15
CHD3-204ENST00000439235 RAPGEF1Q13905 1077 aa22.23■■□□□ 1.15
CHD3-204ENST00000439235 SPOPLQ6IQ16 392 aa22.23■■□□□ 1.15
CHD3-204ENST00000439235 GJB7Q6PEY0 223 aa22.23■■□□□ 1.15
CHD3-204ENST00000439235 FMNL3Q8IVF7 1028 aa22.23■■□□□ 1.15
CHD3-204ENST00000439235 TMEM130Q8N3G9 435 aa22.23■■□□□ 1.15
CHD3-204ENST00000439235 SLC9A7Q96T83 725 aa22.23■■□□□ 1.15
CHD3-204ENST00000439235 NAA15Q9BXJ9 866 aaKnown RBP22.23■■□□□ 1.15
CHD3-204ENST00000439235 NUCKS1Q9H1E3 243 aaKnown RBP22.23■■□□□ 1.15
CHD3-204ENST00000439235 APOBEC3GQ9HC16 384 aaKnown RBP22.23■■□□□ 1.15
CHD3-204ENST00000439235 MYO6Q9UM54 1294 aa22.23■■□□□ 1.15
CHD3-204ENST00000439235 NUB1Q9Y5A7 615 aa22.23■■□□□ 1.15
CHD3-204ENST00000439235 PPEF2O14830 753 aa22.22■■□□□ 1.15
CHD3-204ENST00000439235 KRT9P35527 623 aa22.22■■□□□ 1.15
CHD3-204ENST00000439235 CLCNKBP51801 687 aa22.22■■□□□ 1.15
CHD3-204ENST00000439235 WDR72Q3MJ13 1102 aa22.22■■□□□ 1.15
CHD3-204ENST00000439235 SCARA3Q6AZY7 606 aa22.22■■□□□ 1.15
CHD3-204ENST00000439235 SMYD5Q6GMV2 418 aa22.22■■□□□ 1.15
CHD3-204ENST00000439235 RRAGAQ7L523 313 aa22.22■■□□□ 1.15
CHD3-204ENST00000439235 TATDN2Q93075 761 aa22.22■■□□□ 1.15
CHD3-204ENST00000439235 JAKMIP2Q96AA8 810 aa22.22■■□□□ 1.15
CHD3-204ENST00000439235 STK33Q9BYT3 514 aa22.22■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms