RNA–Protein interactions for RNA: ENST00000425443.6

COL12A1-205, Transcript of collagen type XII alpha 1 chain, human

TSL 5

Gene COL12A1, Length 3,135 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COL12A1-205	ENST00000425443	CENPT	Q96BT3	561 aa		13.83	□□□□□ -0.2
COL12A1-205	ENST00000425443	POLR3F	Q9H1D9	316 aa	Predicted RBP	13.83	□□□□□ -0.2
COL12A1-205	ENST00000425443	CNOT10	Q9H9A5	744 aa	Known RBP	13.83	□□□□□ -0.2
COL12A1-205	ENST00000425443	LMCD1	Q9NZU5	365 aa		13.83	□□□□□ -0.2
COL12A1-205	ENST00000425443	MTUS1	Q9ULD2	1270 aa		13.83	□□□□□ -0.2
COL12A1-205	ENST00000425443	WDR3	Q9UNX4	943 aa	Known RBP eCLIP	13.83	□□□□□ -0.2
COL12A1-205	ENST00000425443	AGAP1	Q9UPQ3	857 aa		13.83	□□□□□ -0.2
COL12A1-205	ENST00000425443	CD2AP	Q9Y5K6	639 aa		13.83	□□□□□ -0.2
COL12A1-205	ENST00000425443	VIM	P08670	466 aa	Known RBP	13.83	□□□□□ -0.2
COL12A1-205	ENST00000425443	RPSA	P08865	295 aa	Known RBP	13.83	□□□□□ -0.2
COL12A1-205	ENST00000425443	GZMA	P12544	262 aa		13.83	□□□□□ -0.2
COL12A1-205	ENST00000425443	CHKA	P35790	457 aa		13.83	□□□□□ -0.2
COL12A1-205	ENST00000425443	DRG2	P55039	364 aa	Known RBP	13.83	□□□□□ -0.2
COL12A1-205	ENST00000425443	ACTR2	P61160	394 aa		13.83	□□□□□ -0.2
COL12A1-205	ENST00000425443	MIS18BP1	Q6P0N0	1132 aa		13.83	□□□□□ -0.2
COL12A1-205	ENST00000425443	HOOK3	Q86VS8	718 aa		13.83	□□□□□ -0.2
COL12A1-205	ENST00000425443	PASD1	Q8IV76	773 aa		13.83	□□□□□ -0.2
COL12A1-205	ENST00000425443	TEX13B	Q9BXU2	312 aa		13.83	□□□□□ -0.2
COL12A1-205	ENST00000425443	ACAD9	Q9H845	621 aa		13.83	□□□□□ -0.2
COL12A1-205	ENST00000425443	C17orf75	Q9HAS0	396 aa		13.83	□□□□□ -0.2
COL12A1-205	ENST00000425443	ABCF3	Q9NUQ8	709 aa		13.83	□□□□□ -0.2
COL12A1-205	ENST00000425443	ASIC3	Q9UHC3	531 aa		13.83	□□□□□ -0.2
COL12A1-205	ENST00000425443	TELO2	Q9Y4R8	837 aa		13.83	□□□□□ -0.2
COL12A1-205	ENST00000425443	CCT8L1P	A6NM43	557 aa		13.82	□□□□□ -0.2
COL12A1-205	ENST00000425443	CHUK	O15111	745 aa		13.82	□□□□□ -0.2
COL12A1-205	ENST00000425443	SNUPN	O95149	360 aa	Known RBP	13.82	□□□□□ -0.2
COL12A1-205	ENST00000425443	SETSIP	P0DME0	302 aa		13.82	□□□□□ -0.2
COL12A1-205	ENST00000425443	CHRNA3	P32297	505 aa		13.82	□□□□□ -0.2
COL12A1-205	ENST00000425443	RANBP1	P43487	201 aa		13.82	□□□□□ -0.2
COL12A1-205	ENST00000425443	HADHB	P55084	474 aa	Known RBP	13.82	□□□□□ -0.2
COL12A1-205	ENST00000425443	CYP24A1	Q07973	514 aa		13.82	□□□□□ -0.2
COL12A1-205	ENST00000425443	TNFAIP8L3	Q5GJ75	292 aa		13.82	□□□□□ -0.2
COL12A1-205	ENST00000425443	SPDYC	Q5MJ68	293 aa		13.82	□□□□□ -0.2
COL12A1-205	ENST00000425443	CCDC60	Q8IWA6	550 aa	Predicted RBP	13.82	□□□□□ -0.2
COL12A1-205	ENST00000425443	CPA5	Q8WXQ8	436 aa		13.82	□□□□□ -0.2
COL12A1-205	ENST00000425443	SHC3	Q92529	594 aa		13.82	□□□□□ -0.2
COL12A1-205	ENST00000425443	CYP26B1	Q9NR63	512 aa		13.82	□□□□□ -0.2
COL12A1-205	ENST00000425443	LRRIQ4	A6NIV6	560 aa		13.82	□□□□□ -0.2
COL12A1-205	ENST00000425443	RDX	P35241	583 aa	Known RBP	13.82	□□□□□ -0.2
COL12A1-205	ENST00000425443	COIL	P38432	576 aa	Predicted RBP	13.82	□□□□□ -0.2
COL12A1-205	ENST00000425443	FMO1	Q01740	532 aa		13.82	□□□□□ -0.2
COL12A1-205	ENST00000425443	CDR2	Q01850	454 aa		13.82	□□□□□ -0.2
COL12A1-205	ENST00000425443	XRCC4	Q13426	336 aa		13.82	□□□□□ -0.2
COL12A1-205	ENST00000425443	TMEM132B	Q14DG7	1078 aa		13.82	□□□□□ -0.2
COL12A1-205	ENST00000425443	EXOC3L1	Q86VI1	746 aa		13.82	□□□□□ -0.2
COL12A1-205	ENST00000425443	CCDC50	Q8IVM0	306 aa		13.82	□□□□□ -0.2
COL12A1-205	ENST00000425443	SPIRE2	Q8WWL2	714 aa		13.82	□□□□□ -0.2
COL12A1-205	ENST00000425443	ART4	Q93070	314 aa		13.82	□□□□□ -0.2
COL12A1-205	ENST00000425443	WNT8A	Q9H1J5	351 aa		13.82	□□□□□ -0.2
COL12A1-205	ENST00000425443	NFKBIE	O00221	500 aa		13.81	□□□□□ -0.2
COL12A1-205	ENST00000425443	HARS	P12081	509 aa	Known RBP	13.81	□□□□□ -0.2
COL12A1-205	ENST00000425443	KCNA2	P16389	499 aa		13.81	□□□□□ -0.2
COL12A1-205	ENST00000425443	DSG3	P32926	999 aa		13.81	□□□□□ -0.2
COL12A1-205	ENST00000425443	ZNF568	Q3ZCX4	644 aa		13.81	□□□□□ -0.2
COL12A1-205	ENST00000425443	BRDT	Q58F21	947 aa	Predicted RBP	13.81	□□□□□ -0.2
COL12A1-205	ENST00000425443	FAM133B	Q5BKY9	247 aa	Known RBP	13.81	□□□□□ -0.2
COL12A1-205	ENST00000425443	SEPT14	Q6ZU15	432 aa		13.81	□□□□□ -0.2
COL12A1-205	ENST00000425443	PRUNE1	Q86TP1	453 aa		13.81	□□□□□ -0.2
COL12A1-205	ENST00000425443	ANKRD35	Q8N283	1001 aa		13.81	□□□□□ -0.2
COL12A1-205	ENST00000425443	CCDC197	Q8NCU1	140 aa		13.81	□□□□□ -0.2
COL12A1-205	ENST00000425443	TMC2	Q8TDI7	906 aa		13.81	□□□□□ -0.2
COL12A1-205	ENST00000425443	TMEM143	Q96AN5	459 aa		13.81	□□□□□ -0.2
COL12A1-205	ENST00000425443	INTS9	Q9NV88	658 aa	Known RBP	13.81	□□□□□ -0.2
COL12A1-205	ENST00000425443	ANAPC7	Q9UJX3	599 aa		13.81	□□□□□ -0.2
COL12A1-205	ENST00000425443	PCDHGA4	Q9Y5G9	962 aa		13.81	□□□□□ -0.2
COL12A1-205	ENST00000425443	HSPA6	P17066	643 aa		13.81	□□□□□ -0.2
COL12A1-205	ENST00000425443	GPC3	P51654	580 aa		13.81	□□□□□ -0.2
COL12A1-205	ENST00000425443	ELF3	P78545	371 aa	Predicted RBP	13.81	□□□□□ -0.2
COL12A1-205	ENST00000425443	CNGA2	Q16280	664 aa		13.81	□□□□□ -0.2
COL12A1-205	ENST00000425443	SLC13A5	Q86YT5	568 aa	Predicted RBP	13.81	□□□□□ -0.2
COL12A1-205	ENST00000425443	PHC3	Q8NDX5	983 aa		13.81	□□□□□ -0.2
COL12A1-205	ENST00000425443	DEPTOR	Q8TB45	409 aa		13.81	□□□□□ -0.2
COL12A1-205	ENST00000425443	DYDC1	Q8WWB3	177 aa		13.81	□□□□□ -0.2
COL12A1-205	ENST00000425443	RPS6KC1	Q96S38	1066 aa		13.81	□□□□□ -0.2
COL12A1-205	ENST00000425443	PLVAP	Q9BX97	442 aa		13.81	□□□□□ -0.2
COL12A1-205	ENST00000425443	A1CF	Q9NQ94	594 aa	Known RBP	13.81	□□□□□ -0.2
COL12A1-205	ENST00000425443	ANKFY1	Q9P2R3	1169 aa		13.81	□□□□□ -0.2
COL12A1-205	ENST00000425443	TBK1	Q9UHD2	729 aa		13.81	□□□□□ -0.2
COL12A1-205	ENST00000425443	UST	Q9Y2C2	406 aa		13.81	□□□□□ -0.2
COL12A1-205	ENST00000425443		H0YCG3	227 aa		13.81	□□□□□ -0.2
COL12A1-205	ENST00000425443	ACOT2	P49753	483 aa		13.81	□□□□□ -0.2
COL12A1-205	ENST00000425443	SNCB	Q16143	134 aa		13.81	□□□□□ -0.2
COL12A1-205	ENST00000425443	EXOC8	Q8IYI6	725 aa		13.81	□□□□□ -0.2
COL12A1-205	ENST00000425443	ANKRD42	Q8N9B4	389 aa		13.81	□□□□□ -0.2
COL12A1-205	ENST00000425443	HELQ	Q8TDG4	1101 aa		13.81	□□□□□ -0.2
COL12A1-205	ENST00000425443	KLHL11	Q9NVR0	708 aa		13.81	□□□□□ -0.2
COL12A1-205	ENST00000425443	SLTM	Q9NWH9	1034 aa	Known RBP eCLIP	13.81	□□□□□ -0.2
COL12A1-205	ENST00000425443	CYP39A1	Q9NYL5	469 aa		13.81	□□□□□ -0.2
COL12A1-205	ENST00000425443	MTRF1L	Q9UGC7	380 aa	Known RBP	13.81	□□□□□ -0.2
COL12A1-205	ENST00000425443	SLC12A4	Q9UP95	1085 aa		13.81	□□□□□ -0.2
COL12A1-205	ENST00000425443	ADGRA3	Q8IWK6	1321 aa		13.8	□□□□□ -0.2
COL12A1-205	ENST00000425443		O00370	1275 aa		13.8	□□□□□ -0.2
COL12A1-205	ENST00000425443	GH1	P01241	217 aa		13.8	□□□□□ -0.2
COL12A1-205	ENST00000425443	PYGB	P11216	843 aa		13.8	□□□□□ -0.2
COL12A1-205	ENST00000425443	CDC25C	P30307	473 aa		13.8	□□□□□ -0.2
COL12A1-205	ENST00000425443	MAPK4	P31152	587 aa		13.8	□□□□□ -0.2
COL12A1-205	ENST00000425443	PIK3CA	P42336	1068 aa		13.8	□□□□□ -0.2
COL12A1-205	ENST00000425443	GRIK3	Q13003	919 aa		13.8	□□□□□ -0.2
COL12A1-205	ENST00000425443	MPP2	Q14168	576 aa		13.8	□□□□□ -0.2
COL12A1-205	ENST00000425443	PREPL	Q4J6C6	727 aa	Predicted RBP	13.8	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms