RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 GALNTL6Q49A17 601 aa3.59□□□□□ -1.83
SYNE1-212ENST00000423061 USP40Q9NVE5 1235 aa3.59□□□□□ -1.83
SYNE1-212ENST00000423061 ANGEL1Q9UNK9 670 aaKnown RBP3.59□□□□□ -1.83
SYNE1-212ENST00000423061 MEN1O00255 615 aa3.59□□□□□ -1.83
SYNE1-212ENST00000423061 AMPD1P23109 780 aa3.59□□□□□ -1.83
SYNE1-212ENST00000423061 CNGA2Q16280 664 aa3.59□□□□□ -1.83
SYNE1-212ENST00000423061 FOXP4Q8IVH2 680 aaPredicted RBP3.59□□□□□ -1.83
SYNE1-212ENST00000423061 ARMCX1Q9P291 453 aa3.59□□□□□ -1.83
SYNE1-212ENST00000423061 FAM32AQ9Y421 112 aaKnown RBP3.59□□□□□ -1.83
SYNE1-212ENST00000423061 PLEKP08567 350 aaPredicted RBP3.59□□□□□ -1.83
SYNE1-212ENST00000423061 FAM214AQ32MH5 1076 aa3.59□□□□□ -1.83
SYNE1-212ENST00000423061 GPR107Q5VW38 600 aa3.59□□□□□ -1.83
SYNE1-212ENST00000423061 RESP18Q5W5W9 173 aa3.59□□□□□ -1.83
SYNE1-212ENST00000423061 BTNL9Q6UXG8 535 aa3.59□□□□□ -1.83
SYNE1-212ENST00000423061 GPR141Q7Z602 305 aa3.59□□□□□ -1.83
SYNE1-212ENST00000423061 HPS5Q9UPZ3 1129 aa3.59□□□□□ -1.83
SYNE1-212ENST00000423061 CARMIL3Q8ND23 1372 aa3.59□□□□□ -1.83
SYNE1-212ENST00000423061 SPARCL1Q14515 664 aa3.59□□□□□ -1.83
SYNE1-212ENST00000423061 METTL16Q86W50 562 aaKnown RBP3.59□□□□□ -1.83
SYNE1-212ENST00000423061 ENGASEQ8NFI3 743 aa3.59□□□□□ -1.83
SYNE1-212ENST00000423061 NRG4Q8WWG1 115 aa3.59□□□□□ -1.83
SYNE1-212ENST00000423061 TBCCD1Q9NVR7 557 aa3.59□□□□□ -1.83
SYNE1-212ENST00000423061 KIAA1257Q9ULG3 409 aa3.59□□□□□ -1.83
SYNE1-212ENST00000423061 SPOPO43791 374 aa3.59□□□□□ -1.83
SYNE1-212ENST00000423061 ZBED1O96006 694 aa3.59□□□□□ -1.83
SYNE1-212ENST00000423061 PORP16435 677 aaPredicted RBP3.59□□□□□ -1.83
SYNE1-212ENST00000423061 MAP4P27816 1152 aaKnown RBP3.59□□□□□ -1.83
SYNE1-212ENST00000423061 GSTA5Q7RTV2 222 aa3.59□□□□□ -1.83
SYNE1-212ENST00000423061 PSD4Q8NDX1 1056 aa3.59□□□□□ -1.83
SYNE1-212ENST00000423061 LILRB4Q8NHJ6 448 aa3.59□□□□□ -1.83
SYNE1-212ENST00000423061 SLC35B4Q969S0 331 aa3.59□□□□□ -1.83
SYNE1-212ENST00000423061 RELTQ969Z4 430 aa3.59□□□□□ -1.83
SYNE1-212ENST00000423061 GOLPH3Q9H4A6 298 aa3.59□□□□□ -1.83
SYNE1-212ENST00000423061 TTC34A8MYJ7 566 aa3.59□□□□□ -1.83
SYNE1-212ENST00000423061 CFAP99D6REC4 459 aa3.59□□□□□ -1.83
SYNE1-212ENST00000423061 PGRMC1O00264 195 aaKnown RBP3.59□□□□□ -1.83
SYNE1-212ENST00000423061 WEE1P30291 646 aa3.59□□□□□ -1.83
SYNE1-212ENST00000423061 CDK7P50613 346 aa3.59□□□□□ -1.83
SYNE1-212ENST00000423061 ZNF211Q13398 564 aaPredicted RBP3.59□□□□□ -1.83
SYNE1-212ENST00000423061 KLHL38Q2WGJ6 581 aa3.59□□□□□ -1.83
SYNE1-212ENST00000423061 C14orf93Q9H972 538 aaKnown RBP3.59□□□□□ -1.83
SYNE1-212ENST00000423061 EPS15L1Q9UBC2 864 aa3.59□□□□□ -1.83
SYNE1-212ENST00000423061 GPSM3Q9Y4H4 160 aa3.59□□□□□ -1.83
SYNE1-212ENST00000423061 EMSYQ7Z589 1322 aa3.59□□□□□ -1.83
SYNE1-212ENST00000423061 A0A1B0GTH6 734 aa3.59□□□□□ -1.83
SYNE1-212ENST00000423061 CCDC22O60826 627 aa3.59□□□□□ -1.83
SYNE1-212ENST00000423061 WFS1O76024 890 aa3.59□□□□□ -1.83
SYNE1-212ENST00000423061 KITP10721 976 aa3.59□□□□□ -1.83
SYNE1-212ENST00000423061 RAG1P15918 1043 aa3.59□□□□□ -1.83
SYNE1-212ENST00000423061 CDH15P55291 814 aa3.59□□□□□ -1.83
SYNE1-212ENST00000423061 SYNDIG1Q9H7V2 258 aa3.59□□□□□ -1.83
SYNE1-212ENST00000423061 MTRF1O75570 445 aaKnown RBP3.59□□□□□ -1.83
SYNE1-212ENST00000423061 ZNF76P36508 570 aa3.59□□□□□ -1.83
SYNE1-212ENST00000423061 MRPL28Q13084 256 aaKnown RBP3.59□□□□□ -1.83
SYNE1-212ENST00000423061 PPP2R5EQ16537 467 aa3.59□□□□□ -1.83
SYNE1-212ENST00000423061 TSPAN14Q8NG11 270 aa3.59□□□□□ -1.83
SYNE1-212ENST00000423061 LRRC59Q96AG4 307 aaKnown RBP3.59□□□□□ -1.83
SYNE1-212ENST00000423061 GSNP06396 782 aa3.59□□□□□ -1.84
SYNE1-212ENST00000423061 RAD23AP54725 363 aa3.59□□□□□ -1.84
SYNE1-212ENST00000423061 TOB2Q14106 344 aaPredicted RBP3.59□□□□□ -1.84
SYNE1-212ENST00000423061 MAPK6Q16659 721 aa3.59□□□□□ -1.84
SYNE1-212ENST00000423061 CFAP36Q96G28 342 aa3.59□□□□□ -1.84
SYNE1-212ENST00000423061 TIPINQ9BVW5 301 aa3.59□□□□□ -1.84
SYNE1-212ENST00000423061 MAP3K20Q9NYL2 800 aaKnown RBP3.59□□□□□ -1.84
SYNE1-212ENST00000423061 PRLRP16471 622 aa3.59□□□□□ -1.84
SYNE1-212ENST00000423061 VCPP55072 806 aaKnown RBP3.59□□□□□ -1.84
SYNE1-212ENST00000423061 ANKRD20A4Q4UJ75 823 aa3.59□□□□□ -1.84
SYNE1-212ENST00000423061 PARP10Q53GL7 1025 aa3.59□□□□□ -1.84
SYNE1-212ENST00000423061 STK32CQ86UX6 486 aa3.59□□□□□ -1.84
SYNE1-212ENST00000423061 ANKRD35Q8N283 1001 aa3.59□□□□□ -1.84
SYNE1-212ENST00000423061 ESR2Q92731 530 aa3.59□□□□□ -1.84
SYNE1-212ENST00000423061 BORCS5Q969J3 196 aa3.59□□□□□ -1.84
SYNE1-212ENST00000423061 CELF4Q9BZC1 486 aaKnown RBP3.59□□□□□ -1.84
SYNE1-212ENST00000423061 TRABDQ9H4I3 376 aa3.59□□□□□ -1.84
SYNE1-212ENST00000423061 EBF3Q9H4W6 596 aa3.59□□□□□ -1.84
SYNE1-212ENST00000423061 RNF14Q9UBS8 474 aa3.59□□□□□ -1.84
SYNE1-212ENST00000423061 NUP107P57740 925 aa3.59□□□□□ -1.84
SYNE1-212ENST00000423061 AAGABQ6PD74 315 aa3.59□□□□□ -1.84
SYNE1-212ENST00000423061 CENPTQ96BT3 561 aa3.59□□□□□ -1.84
SYNE1-212ENST00000423061 MTFR1LQ9H019 292 aa3.59□□□□□ -1.84
SYNE1-212ENST00000423061 POLHQ9Y253 713 aa3.59□□□□□ -1.84
SYNE1-212ENST00000423061 SETD1BQ9UPS6 1966 aaKnown RBP3.59□□□□□ -1.84
SYNE1-212ENST00000423061 ZNF213O14771 459 aa3.59□□□□□ -1.84
SYNE1-212ENST00000423061 PSMG1O95456 288 aa3.59□□□□□ -1.84
SYNE1-212ENST00000423061 NPTX2P47972 431 aa3.59□□□□□ -1.84
SYNE1-212ENST00000423061 RIPOR1Q6ZS17 1223 aa3.59□□□□□ -1.84
SYNE1-212ENST00000423061 BARGINQ6ZT62 677 aa3.59□□□□□ -1.84
SYNE1-212ENST00000423061 GALNT7Q86SF2 657 aa3.59□□□□□ -1.84
SYNE1-212ENST00000423061 CD302Q8IX05 232 aa3.59□□□□□ -1.84
SYNE1-212ENST00000423061 SYCE1Q8N0S2 351 aa3.59□□□□□ -1.84
SYNE1-212ENST00000423061 HELQQ8TDG4 1101 aa3.59□□□□□ -1.84
SYNE1-212ENST00000423061 HEY2Q9UBP5 337 aa3.59□□□□□ -1.84
SYNE1-212ENST00000423061 PCDHGA11Q9Y5H2 935 aa3.59□□□□□ -1.84
SYNE1-212ENST00000423061 POTEB3A0JP26 581 aa3.59□□□□□ -1.84
SYNE1-212ENST00000423061 BIRC5O15392 142 aa3.59□□□□□ -1.84
SYNE1-212ENST00000423061 FAM228BP0C875 321 aa3.59□□□□□ -1.84
SYNE1-212ENST00000423061 KCNJ8Q15842 424 aa3.59□□□□□ -1.84
SYNE1-212ENST00000423061 PPP4R4Q6NUP7 873 aa3.59□□□□□ -1.84
SYNE1-212ENST00000423061 POTEBQ6S5H4 581 aa3.59□□□□□ -1.84
SYNE1-212ENST00000423061 ZC3H15Q8WU90 426 aaKnown RBP3.59□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms