RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 PCDHB8Q9UN66 801 aa12.59□□□□□ -0.39
SQSTM1-203ENST00000422245 MRPS23Q9Y3D9 190 aaKnown RBP12.59□□□□□ -0.39
SQSTM1-203ENST00000422245 INSL5Q9Y5Q6 135 aa12.59□□□□□ -0.39
SQSTM1-203ENST00000422245 NOTCH4Q99466 2003 aa12.59□□□□□ -0.39
SQSTM1-203ENST00000422245 FAM186AA6NE01 2351 aa12.58□□□□□ -0.4
SQSTM1-203ENST00000422245 PRR23AA6NEV1 266 aa12.58□□□□□ -0.4
SQSTM1-203ENST00000422245 ARPP19P56211 112 aa12.58□□□□□ -0.4
SQSTM1-203ENST00000422245 KARSQ15046 597 aaKnown RBP12.58□□□□□ -0.4
SQSTM1-203ENST00000422245 SF3A1Q15459 793 aaKnown RBP12.58□□□□□ -0.4
SQSTM1-203ENST00000422245 SLC5A9Q2M3M2 681 aa12.58□□□□□ -0.4
SQSTM1-203ENST00000422245 FRMD5Q7Z6J6 570 aa12.58□□□□□ -0.4
SQSTM1-203ENST00000422245 ELMOD1Q8N336 334 aa12.58□□□□□ -0.4
SQSTM1-203ENST00000422245 MYCT1Q8N699 235 aa12.58□□□□□ -0.4
SQSTM1-203ENST00000422245 ING5Q8WYH8 240 aa12.58□□□□□ -0.4
SQSTM1-203ENST00000422245 DDX12PQ92771 950 aa12.58□□□□□ -0.4
SQSTM1-203ENST00000422245 NKD2Q969F2 451 aaPredicted RBP12.58□□□□□ -0.4
SQSTM1-203ENST00000422245 KIF12Q96FN5 646 aa12.58□□□□□ -0.4
SQSTM1-203ENST00000422245 RPP25Q9BUL9 199 aaKnown RBP12.58□□□□□ -0.4
SQSTM1-203ENST00000422245 OXCT2Q9BYC2 517 aaPredicted RBP12.58□□□□□ -0.4
SQSTM1-203ENST00000422245 CYP4F11Q9HBI6 524 aa12.58□□□□□ -0.4
SQSTM1-203ENST00000422245 AFF4Q9UHB7 1163 aaKnown RBP12.58□□□□□ -0.4
SQSTM1-203ENST00000422245 USP34Q70CQ2 3546 aa12.57□□□□□ -0.4
SQSTM1-203ENST00000422245 MIA3Q5JRA6 1907 aa12.57□□□□□ -0.4
SQSTM1-203ENST00000422245 VPS37CA5D8V6 355 aaPredicted RBP12.57□□□□□ -0.4
SQSTM1-203ENST00000422245 M0QZQ0 153 aa12.57□□□□□ -0.4
SQSTM1-203ENST00000422245 OGTO15294 1046 aa12.57□□□□□ -0.4
SQSTM1-203ENST00000422245 TRAK2O60296 914 aa12.57□□□□□ -0.4
SQSTM1-203ENST00000422245 FAM189A1O60320 539 aa12.57□□□□□ -0.4
SQSTM1-203ENST00000422245 ECI2O75521 394 aa12.57□□□□□ -0.4
SQSTM1-203ENST00000422245 MICAL2O94851 1124 aa12.57□□□□□ -0.4
SQSTM1-203ENST00000422245 CPB1P15086 417 aa12.57□□□□□ -0.4
SQSTM1-203ENST00000422245 PTPN2P17706 415 aa12.57□□□□□ -0.4
SQSTM1-203ENST00000422245 MARCKSP29966 332 aaPredicted RBP12.57□□□□□ -0.4
SQSTM1-203ENST00000422245 AARSP49588 968 aaKnown RBP eCLIP12.57□□□□□ -0.41e-7■□□□□ 8.5
SQSTM1-203ENST00000422245 STARD6P59095 220 aa12.57□□□□□ -0.4
SQSTM1-203ENST00000422245 GPC5P78333 572 aa12.57□□□□□ -0.4
SQSTM1-203ENST00000422245 PRKCQQ04759 706 aa12.57□□□□□ -0.4
SQSTM1-203ENST00000422245 YWHAHQ04917 246 aaPredicted RBP12.57□□□□□ -0.4
SQSTM1-203ENST00000422245 CUL4AQ13619 759 aa12.57□□□□□ -0.4
SQSTM1-203ENST00000422245 DHX8Q14562 1220 aaKnown RBP12.57□□□□□ -0.4
SQSTM1-203ENST00000422245 MCM6Q14566 821 aa12.57□□□□□ -0.4
SQSTM1-203ENST00000422245 MLF2Q15773 248 aaPredicted RBP12.57□□□□□ -0.4
SQSTM1-203ENST00000422245 ENOX2Q16206 610 aaKnown RBP12.57□□□□□ -0.4
SQSTM1-203ENST00000422245 MAP4K3Q8IVH8 894 aa12.57□□□□□ -0.4
SQSTM1-203ENST00000422245 LEMD2Q8NC56 503 aa12.57□□□□□ -0.4
SQSTM1-203ENST00000422245 ST13P5Q8NFI4 369 aaPredicted RBP12.57□□□□□ -0.4
SQSTM1-203ENST00000422245 PJA1Q8NG27 643 aa12.57□□□□□ -0.4
SQSTM1-203ENST00000422245 LRRC15Q8TF66 581 aa12.57□□□□□ -0.4
SQSTM1-203ENST00000422245 LARP4BQ92615 738 aaKnown RBP12.57□□□□□ -0.4
SQSTM1-203ENST00000422245 KXD1Q9BQD3 176 aa12.57□□□□□ -0.4
SQSTM1-203ENST00000422245 MSTO1Q9BUK6 570 aa12.57□□□□□ -0.4
SQSTM1-203ENST00000422245 CCSER1Q9C0I3 900 aa12.57□□□□□ -0.4
SQSTM1-203ENST00000422245 HAPLN2Q9GZV7 340 aa12.57□□□□□ -0.4
SQSTM1-203ENST00000422245 RPF1Q9H9Y2 349 aaKnown RBP12.57□□□□□ -0.4
SQSTM1-203ENST00000422245 SIT1Q9Y3P8 196 aa12.57□□□□□ -0.4
SQSTM1-203ENST00000422245 PTPRZ1P23471 2315 aaPredicted RBP12.57□□□□□ -0.4
SQSTM1-203ENST00000422245 A0A0B4J269 797 aa12.56□□□□□ -0.4
SQSTM1-203ENST00000422245 ZNF197O14709 1029 aa12.56□□□□□ -0.4
SQSTM1-203ENST00000422245 OAZ2O95190 189 aa12.56□□□□□ -0.4
SQSTM1-203ENST00000422245 SEC24AO95486 1093 aa12.56□□□□□ -0.4
SQSTM1-203ENST00000422245 CEBPBP17676 345 aa12.56□□□□□ -0.4
SQSTM1-203ENST00000422245 PAX3P23760 479 aa12.56□□□□□ -0.4
SQSTM1-203ENST00000422245 TNFSF9P41273 254 aa12.56□□□□□ -0.4
SQSTM1-203ENST00000422245 GRIN1Q05586 938 aa12.56□□□□□ -0.4
SQSTM1-203ENST00000422245 ADCY1Q08828 1119 aa12.56□□□□□ -0.4
SQSTM1-203ENST00000422245 ZBTB6Q15916 424 aa12.56□□□□□ -0.4
SQSTM1-203ENST00000422245 PRSS36Q5K4E3 855 aa12.56□□□□□ -0.4
SQSTM1-203ENST00000422245 ZBTB41Q5SVQ8 909 aa12.56□□□□□ -0.4
SQSTM1-203ENST00000422245 IQCEQ6IPM2 695 aa12.56□□□□□ -0.4
SQSTM1-203ENST00000422245 PDZD4Q76G19 769 aaPredicted RBP12.56□□□□□ -0.4
SQSTM1-203ENST00000422245 ASCL5Q7RTU5 278 aa12.56□□□□□ -0.4
SQSTM1-203ENST00000422245 USP37Q86T82 979 aa12.56□□□□□ -0.4
SQSTM1-203ENST00000422245 CD302Q8IX05 232 aa12.56□□□□□ -0.4
SQSTM1-203ENST00000422245 FIZ1Q96SL8 496 aa12.56□□□□□ -0.4
SQSTM1-203ENST00000422245 CORO1BQ9BR76 489 aa12.56□□□□□ -0.4
SQSTM1-203ENST00000422245 ZHX3Q9H4I2 956 aa12.56□□□□□ -0.4
SQSTM1-203ENST00000422245 DLGAP2Q9P1A6 1054 aa12.56□□□□□ -0.4
SQSTM1-203ENST00000422245 STK17AQ9UEE5 414 aa12.56□□□□□ -0.4
SQSTM1-203ENST00000422245 GVINP1Q7Z2Y8 2422 aa12.55□□□□□ -0.4
SQSTM1-203ENST00000422245 KANSL1LA0AUZ9 987 aa12.55□□□□□ -0.4
SQSTM1-203ENST00000422245 OR6C75A6NL08 312 aa12.55□□□□□ -0.4
SQSTM1-203ENST00000422245 LACTBL1A8MY62 500 aa12.55□□□□□ -0.4
SQSTM1-203ENST00000422245 ADRB2P07550 413 aa12.55□□□□□ -0.4
SQSTM1-203ENST00000422245 DCNP07585 359 aaKnown RBP12.55□□□□□ -0.4
SQSTM1-203ENST00000422245 TYMPP19971 482 aa12.55□□□□□ -0.4
SQSTM1-203ENST00000422245 TXLNAP40222 546 aa12.55□□□□□ -0.4
SQSTM1-203ENST00000422245 GTF2BQ00403 316 aa12.55□□□□□ -0.4
SQSTM1-203ENST00000422245 SPAG1Q07617 926 aa12.55□□□□□ -0.4
SQSTM1-203ENST00000422245 TWF1Q12792 350 aa12.55□□□□□ -0.4
SQSTM1-203ENST00000422245 PLD1Q13393 1074 aa12.55□□□□□ -0.4
SQSTM1-203ENST00000422245 SNW1Q13573 536 aaKnown RBP12.55□□□□□ -0.4
SQSTM1-203ENST00000422245 SPECC1Q5M775 1068 aa12.55□□□□□ -0.4
SQSTM1-203ENST00000422245 CYP4A22Q5TCH4 519 aa12.55□□□□□ -0.4
SQSTM1-203ENST00000422245 SPATA1Q5VX52 437 aa12.55□□□□□ -0.4
SQSTM1-203ENST00000422245 SLC39A4Q6P5W5 647 aa12.55□□□□□ -0.4
SQSTM1-203ENST00000422245 KRI1Q8N9T8 703 aaKnown RBP12.55□□□□□ -0.4
SQSTM1-203ENST00000422245 BEST2Q8NFU1 509 aa12.55□□□□□ -0.4
SQSTM1-203ENST00000422245 ELSPBP1Q96BH3 223 aa12.55□□□□□ -0.4
SQSTM1-203ENST00000422245 HVCN1Q96D96 273 aa12.55□□□□□ -0.4
SQSTM1-203ENST00000422245 MCRS1Q96EZ8 462 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms