RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 MBTPS1Q14703 1052 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 TRIM60Q495X7 471 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 ZNF667Q5HYK9 610 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 LRRC8DQ7L1W4 858 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 REXO1L1PQ8IX06 675 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 HACE1Q8IYU2 909 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 CAGE1Q8TC20 777 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 SLC20A1Q8WUM9 679 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 SHC3Q92529 594 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 HPDLQ96IR7 371 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 GAD1Q99259 594 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 EIF3CQ99613 913 aaKnown RBP3.98□□□□□ -1.77
RTN4-208ENST00000404909 IRX2Q9BZI1 471 aaPredicted RBP3.98□□□□□ -1.77
RTN4-208ENST00000404909 PLEKHA5Q9HAU0 1116 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 GOLGA2P5Q9HBQ8 144 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 ERVK-5Q9HDB9 667 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 CHST12Q9NRB3 414 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 TRIM10Q9UDY6 481 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 POLIQ9UNA4 740 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 INPP5FQ9Y2H2 1132 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 REXO2Q9Y3B8 237 aaKnown RBP3.98□□□□□ -1.77
RTN4-208ENST00000404909 C2CD2Q9Y426 696 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 BZW2Q9Y6E2 419 aaKnown RBP3.98□□□□□ -1.77
RTN4-208ENST00000404909 CEP290O15078 2479 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 MACROD2A1Z1Q3 448 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 DCDC2CA8MYV0 355 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 TLR3O15455 904 aaKnown RBP3.98□□□□□ -1.77
RTN4-208ENST00000404909 SELPP16109 830 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 TNFAIP3P21580 790 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 TBXAS1P24557 533 aaPredicted RBP3.98□□□□□ -1.77
RTN4-208ENST00000404909 SSTR3P32745 418 aaPredicted RBP3.98□□□□□ -1.77
RTN4-208ENST00000404909 RAP1GAPP47736 663 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 PDE6CP51160 858 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 AFF1P51825 1210 aaKnown RBP3.98□□□□□ -1.77
RTN4-208ENST00000404909 NAP1L1P55209 391 aaKnown RBP3.98□□□□□ -1.77
RTN4-208ENST00000404909 CDH8P55286 799 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 RBP5P82980 135 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 TLE2Q04725 743 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 PKN2Q16513 984 aaKnown RBP3.98□□□□□ -1.77
RTN4-208ENST00000404909 SLC18A3Q16572 532 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 CCDC122Q5T0U0 273 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 SLC39A5Q6ZMH5 540 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 ENOSF1Q7L5Y1 443 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 CD302Q8IX05 232 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 FAM71AQ8IYT1 594 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 BEST2Q8NFU1 509 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 SCLYQ96I15 445 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 PAWRQ96IZ0 340 aaKnown RBP3.98□□□□□ -1.77
RTN4-208ENST00000404909 RPS6KC1Q96S38 1066 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 TMEM106CQ9BVX2 250 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 NIF3L1Q9GZT8 377 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 XYLT2Q9H1B5 865 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 PDCL3Q9H2J4 239 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 PCDH10Q9P2E7 1040 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 PCDHA13Q9Y5I0 950 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 DUSP10Q9Y6W6 482 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 RANBP2P49792 3224 aaKnown RBP3.98□□□□□ -1.77
RTN4-208ENST00000404909 PPEF2O14830 753 aa3.97□□□□□ -1.77
RTN4-208ENST00000404909 CAND2O75155 1236 aa3.97□□□□□ -1.77
RTN4-208ENST00000404909 CLCN1P35523 988 aa3.97□□□□□ -1.77
RTN4-208ENST00000404909 PRKCIP41743 596 aa3.97□□□□□ -1.77
RTN4-208ENST00000404909 MAGEA1P43355 309 aa3.97□□□□□ -1.77
RTN4-208ENST00000404909 MNX1P50219 401 aaPredicted RBP3.97□□□□□ -1.77
RTN4-208ENST00000404909 GNG11P61952 73 aa3.97□□□□□ -1.77
RTN4-208ENST00000404909 POU5F1Q01860 360 aaKnown RBP3.97□□□□□ -1.77
RTN4-208ENST00000404909 KIF5AQ12840 1032 aa3.97□□□□□ -1.77
RTN4-208ENST00000404909 MYO1EQ12965 1108 aa3.97□□□□□ -1.77
RTN4-208ENST00000404909 MAPK8IP2Q13387 824 aaPredicted RBP3.97□□□□□ -1.77
RTN4-208ENST00000404909 ORC1Q13415 861 aa3.97□□□□□ -1.77
RTN4-208ENST00000404909 ASTE1Q2TB18 679 aaPredicted RBP3.97□□□□□ -1.77
RTN4-208ENST00000404909 FAM26DQ5JW98 314 aa3.97□□□□□ -1.77
RTN4-208ENST00000404909 ALKBH5Q6P6C2 394 aaKnown RBP3.97□□□□□ -1.77
RTN4-208ENST00000404909 ALKAL1Q6UXT8 129 aa3.97□□□□□ -1.77
RTN4-208ENST00000404909 DPH6Q7L8W6 267 aa3.97□□□□□ -1.77
RTN4-208ENST00000404909 DEFB128Q7Z7B8 93 aa3.97□□□□□ -1.77
RTN4-208ENST00000404909 FMNL3Q8IVF7 1028 aa3.97□□□□□ -1.77
RTN4-208ENST00000404909 RPUSD2Q8IZ73 545 aaKnown RBP3.97□□□□□ -1.77
RTN4-208ENST00000404909 USP38Q8NB14 1042 aa3.97□□□□□ -1.77
RTN4-208ENST00000404909 RABGGTAQ92696 567 aa3.97□□□□□ -1.77
RTN4-208ENST00000404909 JAKMIP2Q96AA8 810 aa3.97□□□□□ -1.77
RTN4-208ENST00000404909 LACRTQ9GZZ8 138 aa3.97□□□□□ -1.77
RTN4-208ENST00000404909 CRISPLD2Q9H0B8 497 aa3.97□□□□□ -1.77
RTN4-208ENST00000404909 HIPK3Q9H422 1215 aa3.97□□□□□ -1.77
RTN4-208ENST00000404909 SMYD3Q9H7B4 428 aa3.97□□□□□ -1.77
RTN4-208ENST00000404909 CNTN3Q9P232 1028 aa3.97□□□□□ -1.77
RTN4-208ENST00000404909 CACNG4Q9UBN1 327 aa3.97□□□□□ -1.77
RTN4-208ENST00000404909 ITGA11Q9UKX5 1188 aa3.97□□□□□ -1.77
RTN4-208ENST00000404909 DAAM1Q9Y4D1 1078 aa3.97□□□□□ -1.77
RTN4-208ENST00000404909 TRIP11Q15643 1979 aa3.97□□□□□ -1.77
RTN4-208ENST00000404909 CITO14578 2027 aa3.97□□□□□ -1.77
RTN4-208ENST00000404909 A0A0U1RQF3 1178 aa3.97□□□□□ -1.77
RTN4-208ENST00000404909 RCCD1A6NED2 376 aa3.97□□□□□ -1.77
RTN4-208ENST00000404909 GOLGA6L9A6NEM1 432 aa3.97□□□□□ -1.77
RTN4-208ENST00000404909 ARL5CA6NH57 179 aa3.97□□□□□ -1.77
RTN4-208ENST00000404909 DDX3XO00571 662 aaKnown RBP eCLIP3.97□□□□□ -1.772e-35■□□□□ 10.1
RTN4-208ENST00000404909 POMCP01189 267 aa3.97□□□□□ -1.77
RTN4-208ENST00000404909 CD4P01730 458 aa3.97□□□□□ -1.77
RTN4-208ENST00000404909 CYP11B1P15538 503 aa3.97□□□□□ -1.77
RTN4-208ENST00000404909 ABCB4P21439 1286 aa3.97□□□□□ -1.77
RTN4-208ENST00000404909 ASPAP45381 313 aa3.97□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms