RNA–Protein interactions for RNA: ENST00000398145.6

HPS4-202, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS4, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-202ENST00000398145 PREX1Q8TCU6 1659 aa11.65□□□□□ -0.55
HPS4-202ENST00000398145 NWD1Q149M9 1564 aa11.65□□□□□ -0.55
HPS4-202ENST00000398145 DDX3XO00571 662 aaKnown RBP eCLIP11.64□□□□□ -0.559e-7■■■□□ 14.6
HPS4-202ENST00000398145 SHOX2O60902 331 aaPredicted RBP11.64□□□□□ -0.55
HPS4-202ENST00000398145 APRTP07741 180 aa11.64□□□□□ -0.55
HPS4-202ENST00000398145 GNAT1P11488 350 aa11.64□□□□□ -0.55
HPS4-202ENST00000398145 DDR1Q08345 913 aa11.64□□□□□ -0.55
HPS4-202ENST00000398145 PIGHQ14442 188 aaPredicted RBP11.64□□□□□ -0.55
HPS4-202ENST00000398145 HEATR6Q6AI08 1181 aaKnown RBP11.64□□□□□ -0.55
HPS4-202ENST00000398145 C11orf63Q6NUN7 778 aa11.64□□□□□ -0.55
HPS4-202ENST00000398145 ARID3BQ8IVW6 561 aaPredicted RBP11.64□□□□□ -0.55
HPS4-202ENST00000398145 ZNF341Q9BYN7 854 aa11.64□□□□□ -0.55
HPS4-202ENST00000398145 XPO7Q9UIA9 1087 aaKnown RBP11.64□□□□□ -0.55
HPS4-202ENST00000398145 FEM1BQ9UK73 627 aa11.64□□□□□ -0.55
HPS4-202ENST00000398145 JCADQ9P266 1359 aa11.64□□□□□ -0.55
HPS4-202ENST00000398145 GPR75-ASB3A0A0A6YYF3 556 aa11.64□□□□□ -0.55
HPS4-202ENST00000398145 RNF103-CHMP3A0A140T963 221 aa11.64□□□□□ -0.55
HPS4-202ENST00000398145 KLHL2O95198 593 aa11.64□□□□□ -0.55
HPS4-202ENST00000398145 SNRPAP09012 282 aaKnown RBP11.64□□□□□ -0.55
HPS4-202ENST00000398145 EEF1DP29692 281 aaKnown RBP11.64□□□□□ -0.55
HPS4-202ENST00000398145 RPL21P46778 160 aaKnown RBP11.64□□□□□ -0.55
HPS4-202ENST00000398145 PAPOLAP51003 745 aaKnown RBP11.64□□□□□ -0.55
HPS4-202ENST00000398145 EPC2Q52LR7 807 aa11.64□□□□□ -0.55
HPS4-202ENST00000398145 FAM102AQ5T9C2 384 aaPredicted RBP11.64□□□□□ -0.55
HPS4-202ENST00000398145 GRAMD4Q6IC98 578 aa11.64□□□□□ -0.55
HPS4-202ENST00000398145 GFM2Q969S9 779 aaKnown RBP11.64□□□□□ -0.55
HPS4-202ENST00000398145 INPP4AQ96PE3 977 aaPredicted RBP11.64□□□□□ -0.55
HPS4-202ENST00000398145 NAALADL1Q9UQQ1 740 aa11.64□□□□□ -0.55
HPS4-202ENST00000398145 SNX3O60493 162 aa11.64□□□□□ -0.55
HPS4-202ENST00000398145 OSBPP22059 807 aa11.64□□□□□ -0.55
HPS4-202ENST00000398145 PTPN4P29074 926 aa11.64□□□□□ -0.55
HPS4-202ENST00000398145 SERPINB3P29508 390 aa11.64□□□□□ -0.55
HPS4-202ENST00000398145 NFX1Q12986 1120 aaKnown RBP11.64□□□□□ -0.55
HPS4-202ENST00000398145 ZBTB12Q9Y330 459 aaPredicted RBP11.64□□□□□ -0.55
HPS4-202ENST00000398145 PCDHA10Q9Y5I2 948 aa11.64□□□□□ -0.55
HPS4-202ENST00000398145 KDM6AO15550 1401 aaPredicted RBP11.64□□□□□ -0.55
HPS4-202ENST00000398145 ZNF677Q86XU0 584 aa11.64□□□□□ -0.55
HPS4-202ENST00000398145 SPDYE1Q8NFV5 336 aaPredicted RBP11.64□□□□□ -0.55
HPS4-202ENST00000398145 ARHGEF26Q96DR7 871 aa11.64□□□□□ -0.55
HPS4-202ENST00000398145 VPS39Q96JC1 886 aa11.64□□□□□ -0.55
HPS4-202ENST00000398145 NLRP4Q96MN2 994 aa11.64□□□□□ -0.55
HPS4-202ENST00000398145 APOL6Q9BWW8 343 aa11.64□□□□□ -0.55
HPS4-202ENST00000398145 LRRC4Q9HBW1 653 aa11.64□□□□□ -0.55
HPS4-202ENST00000398145 ABCF3Q9NUQ8 709 aa11.64□□□□□ -0.55
HPS4-202ENST00000398145 KLHL8Q9P2G9 620 aaPredicted RBP11.64□□□□□ -0.55
HPS4-202ENST00000398145 XPOTO43592 962 aaKnown RBP11.63□□□□□ -0.55
HPS4-202ENST00000398145 DNAJC6O75061 913 aa11.63□□□□□ -0.55
HPS4-202ENST00000398145 WEE2P0C1S8 567 aa11.63□□□□□ -0.55
HPS4-202ENST00000398145 RBP3P10745 1247 aa11.63□□□□□ -0.55
HPS4-202ENST00000398145 DUOXA2Q1HG44 320 aa11.63□□□□□ -0.55
HPS4-202ENST00000398145 SLC27A3Q5K4L6 730 aa11.63□□□□□ -0.55
HPS4-202ENST00000398145 SWSAP1Q6NVH7 229 aa11.63□□□□□ -0.55
HPS4-202ENST00000398145 C1orf228Q6PIY5 440 aa11.63□□□□□ -0.55
HPS4-202ENST00000398145 MOXD1Q6UVY6 613 aa11.63□□□□□ -0.55
HPS4-202ENST00000398145 MTDHQ86UE4 582 aaKnown RBP11.63□□□□□ -0.55
HPS4-202ENST00000398145 LDHDQ86WU2 507 aa11.63□□□□□ -0.55
HPS4-202ENST00000398145 CDKL3Q8IVW4 592 aaPredicted RBP11.63□□□□□ -0.55
HPS4-202ENST00000398145 CCNYL1Q8N7R7 359 aa11.63□□□□□ -0.55
HPS4-202ENST00000398145 RBBP8NLQ8NC74 664 aaPredicted RBP11.63□□□□□ -0.55
HPS4-202ENST00000398145 BAP1Q92560 729 aa11.63□□□□□ -0.55
HPS4-202ENST00000398145 E2F7Q96AV8 911 aa11.63□□□□□ -0.55
HPS4-202ENST00000398145 CMTM5Q96DZ9 223 aa11.63□□□□□ -0.55
HPS4-202ENST00000398145 BFARQ9NZS9 450 aa11.63□□□□□ -0.55
HPS4-202ENST00000398145 MYO3BQ8WXR4 1341 aa11.63□□□□□ -0.55
HPS4-202ENST00000398145 GNGT2O14610 69 aa11.63□□□□□ -0.55
HPS4-202ENST00000398145 CST8O60676 142 aa11.63□□□□□ -0.55
HPS4-202ENST00000398145 SGPL1O95470 568 aa11.63□□□□□ -0.55
HPS4-202ENST00000398145 SNRPFP62306 86 aaKnown RBP11.63□□□□□ -0.55
HPS4-202ENST00000398145 KIF22Q14807 665 aa11.63□□□□□ -0.55
HPS4-202ENST00000398145 NCAPG2Q86XI2 1143 aa11.63□□□□□ -0.55
HPS4-202ENST00000398145 SLC35C1Q96A29 364 aa11.63□□□□□ -0.55
HPS4-202ENST00000398145 MCEEQ96PE7 176 aa11.63□□□□□ -0.55
HPS4-202ENST00000398145 KIAA0391O15091 583 aaKnown RBP11.63□□□□□ -0.55
HPS4-202ENST00000398145 SH3BP5O60239 455 aa11.63□□□□□ -0.55
HPS4-202ENST00000398145 PYGBP11216 843 aa11.63□□□□□ -0.55
HPS4-202ENST00000398145 CYTH1Q15438 398 aa11.63□□□□□ -0.55
HPS4-202ENST00000398145 KLC3Q6P597 504 aa11.63□□□□□ -0.55
HPS4-202ENST00000398145 PRPF39Q86UA1 669 aaKnown RBP11.63□□□□□ -0.55
HPS4-202ENST00000398145 PPIL6Q8IXY8 311 aa11.63□□□□□ -0.55
HPS4-202ENST00000398145 AGAP11Q8TF27 550 aa11.63□□□□□ -0.55
HPS4-202ENST00000398145 ARHGEF1Q92888 912 aaKnown RBP11.63□□□□□ -0.55
HPS4-202ENST00000398145 TRIM15Q9C019 465 aa11.63□□□□□ -0.55
HPS4-202ENST00000398145 POLR3FQ9H1D9 316 aaPredicted RBP11.63□□□□□ -0.55
HPS4-202ENST00000398145 SNX25Q9H3E2 840 aa11.63□□□□□ -0.55
HPS4-202ENST00000398145 TTC36A6NLP5 189 aa11.62□□□□□ -0.55
HPS4-202ENST00000398145 MSH4O15457 936 aa11.62□□□□□ -0.55
HPS4-202ENST00000398145 ADCY3O60266 1144 aa11.62□□□□□ -0.55
HPS4-202ENST00000398145 MGEA5O60502 916 aa11.62□□□□□ -0.55
HPS4-202ENST00000398145 ZCCHC18P0CG32 403 aa11.62□□□□□ -0.55
HPS4-202ENST00000398145 NPR1P16066 1061 aa11.62□□□□□ -0.55
HPS4-202ENST00000398145 AP3M2P53677 418 aa11.62□□□□□ -0.55
HPS4-202ENST00000398145 ZCWPW2Q504Y3 356 aa11.62□□□□□ -0.55
HPS4-202ENST00000398145 WASHC2DQ5SRD0 308 aa11.62□□□□□ -0.55
HPS4-202ENST00000398145 POTEAQ6S8J7 498 aa11.62□□□□□ -0.55
HPS4-202ENST00000398145 HACE1Q8IYU2 909 aa11.62□□□□□ -0.55
HPS4-202ENST00000398145 FLAD1Q8NFF5 587 aa11.62□□□□□ -0.55
HPS4-202ENST00000398145 FEZF2Q8TBJ5 459 aa11.62□□□□□ -0.55
HPS4-202ENST00000398145 PRPF31Q8WWY3 499 aaKnown RBP11.62□□□□□ -0.55
HPS4-202ENST00000398145 FAM111AQ96PZ2 611 aa11.62□□□□□ -0.55
HPS4-202ENST00000398145 ATXN2Q99700 1313 aaKnown RBP11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms