RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 TSC22D4Q9Y3Q8 395 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 PCDHB11Q9Y5F2 797 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 FAM170BA6NMN3 283 aa8.65□□□□□ -1.02
LIMS1-203ENST00000393310 OPLAHO14841 1288 aa8.65□□□□□ -1.02
LIMS1-203ENST00000393310 MTRF1O75570 445 aaKnown RBP8.65□□□□□ -1.02
LIMS1-203ENST00000393310 BDNFP23560 247 aa8.65□□□□□ -1.02
LIMS1-203ENST00000393310 AARSP49588 968 aaKnown RBP eCLIP8.65□□□□□ -1.02
LIMS1-203ENST00000393310 COPB1P53618 953 aaKnown RBP8.65□□□□□ -1.02
LIMS1-203ENST00000393310 ACTR2P61160 394 aa8.65□□□□□ -1.02
LIMS1-203ENST00000393310 ADCY1Q08828 1119 aa8.65□□□□□ -1.02
LIMS1-203ENST00000393310 TMEM62Q0P6H9 643 aa8.65□□□□□ -1.02
LIMS1-203ENST00000393310 IRAK1BP1Q5VVH5 260 aa8.65□□□□□ -1.02
LIMS1-203ENST00000393310 CEP76Q8TAP6 659 aa8.65□□□□□ -1.02
LIMS1-203ENST00000393310 ARHGEF2Q92974 986 aaKnown RBP8.65□□□□□ -1.02
LIMS1-203ENST00000393310 CABS1Q96KC9 395 aa8.65□□□□□ -1.02
LIMS1-203ENST00000393310 MXRA8Q9BRK3 442 aa8.65□□□□□ -1.02
LIMS1-203ENST00000393310 ST3GAL5Q9UNP4 418 aa8.65□□□□□ -1.02
LIMS1-203ENST00000393310 TMEM191BP0C7N4 346 aa8.65□□□□□ -1.02
LIMS1-203ENST00000393310 CDK4P11802 303 aa8.65□□□□□ -1.02
LIMS1-203ENST00000393310 KRT4P19013 534 aa8.65□□□□□ -1.02
LIMS1-203ENST00000393310 PBX2P40425 430 aa8.65□□□□□ -1.02
LIMS1-203ENST00000393310 PEX6Q13608 980 aa8.65□□□□□ -1.02
LIMS1-203ENST00000393310 BTNL9Q6UXG8 535 aa8.65□□□□□ -1.02
LIMS1-203ENST00000393310 ARHGAP22Q7Z5H3 698 aa8.65□□□□□ -1.02
LIMS1-203ENST00000393310 CHD1LQ86WJ1 897 aa8.65□□□□□ -1.02
LIMS1-203ENST00000393310 ZNF354CQ86Y25 554 aa8.65□□□□□ -1.02
LIMS1-203ENST00000393310 VGLL2Q8N8G2 317 aa8.65□□□□□ -1.02
LIMS1-203ENST00000393310 EHBP1Q8NDI1 1231 aa8.65□□□□□ -1.02
LIMS1-203ENST00000393310 NAT10Q9H0A0 1025 aaKnown RBP8.65□□□□□ -1.02
LIMS1-203ENST00000393310 ALG13Q9NP73 1137 aaKnown RBP8.65□□□□□ -1.02
LIMS1-203ENST00000393310 BATF3Q9NR55 127 aa8.65□□□□□ -1.02
LIMS1-203ENST00000393310 PCDHGA2Q9Y5H1 932 aa8.65□□□□□ -1.02
LIMS1-203ENST00000393310 V9GY48 417 aaPredicted RBP8.65□□□□□ -1.02
LIMS1-203ENST00000393310 DDHD2O94830 711 aa8.65□□□□□ -1.03
LIMS1-203ENST00000393310 LDHAP00338 332 aaKnown RBP8.65□□□□□ -1.03
LIMS1-203ENST00000393310 SDSP20132 328 aa8.65□□□□□ -1.03
LIMS1-203ENST00000393310 KRT2P35908 639 aa8.65□□□□□ -1.03
LIMS1-203ENST00000393310 CCT6AP40227 531 aaKnown RBP8.65□□□□□ -1.03
LIMS1-203ENST00000393310 DGKEP52429 567 aa8.65□□□□□ -1.03
LIMS1-203ENST00000393310 TFF2Q03403 129 aa8.65□□□□□ -1.03
LIMS1-203ENST00000393310 SLC44A4Q53GD3 710 aa8.65□□□□□ -1.03
LIMS1-203ENST00000393310 LARP1BQ659C4 914 aaKnown RBP8.65□□□□□ -1.03
LIMS1-203ENST00000393310 SH3BP5LQ7L8J4 393 aa8.65□□□□□ -1.03
LIMS1-203ENST00000393310 CD302Q8IX05 232 aa8.65□□□□□ -1.03
LIMS1-203ENST00000393310 COLGALT1Q8NBJ5 622 aa8.65□□□□□ -1.03
LIMS1-203ENST00000393310 KIFAP3Q92845 792 aa8.65□□□□□ -1.03
LIMS1-203ENST00000393310 ABCG4Q9H172 646 aa8.65□□□□□ -1.03
LIMS1-203ENST00000393310 TFIP11Q9UBB9 837 aaKnown RBP8.65□□□□□ -1.03
LIMS1-203ENST00000393310 MAFFQ9ULX9 164 aa8.65□□□□□ -1.03
LIMS1-203ENST00000393310 PHTF1Q9UMS5 762 aa8.65□□□□□ -1.03
LIMS1-203ENST00000393310 PDHBP11177 359 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 RFX5P48382 616 aaPredicted RBP8.64□□□□□ -1.03
LIMS1-203ENST00000393310 NOVA1P51513 510 aaKnown RBP8.64□□□□□ -1.03
LIMS1-203ENST00000393310 KCNQ1P51787 676 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 RPS6KA3P51812 740 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 BNIP1Q12981 228 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 GRM4Q14833 912 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 COBLL1Q53SF7 1204 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 HEATR6Q6AI08 1181 aaKnown RBP8.64□□□□□ -1.03
LIMS1-203ENST00000393310 VSIG10LQ86VR7 867 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 GLYCTKQ8IVS8 523 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 ZDHHC14Q8IZN3 488 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 GSDMAQ96QA5 445 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 MAP3K14Q99558 947 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 EIF2AQ9BY44 585 aaKnown RBP8.64□□□□□ -1.03
LIMS1-203ENST00000393310 ATXN3LQ9H3M9 355 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 RNPEPQ9H4A4 650 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 SYNDIG1Q9H7V2 258 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 TAF1LQ8IZX4 1826 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 OPHN1O60890 802 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 LRP3O75074 770 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 DGAT1O75907 488 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 F2P00734 622 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 CKMP06732 381 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 MYBL2P10244 700 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 RALAP11233 206 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 ODC1P11926 461 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 STIP1P31948 543 aaKnown RBP8.64□□□□□ -1.03
LIMS1-203ENST00000393310 GRIK3Q13003 919 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 SERINC5Q86VE9 423 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 PARP9Q8IXQ6 854 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 EFCAB3Q8N7B9 438 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 OSMRQ99650 979 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 C17orf80Q9BSJ5 609 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 ADAM7Q9H2U9 754 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 ANTXR1Q9H6X2 564 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 DCTPP1Q9H773 170 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 TRPM5Q9NZQ8 1165 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 RFXAPO00287 272 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 NFIBO00712 420 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 ZSCAN12O43309 604 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 DUSP3P51452 185 aaPredicted RBP8.64□□□□□ -1.03
LIMS1-203ENST00000393310 FAM171A1Q5VUB5 890 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 NEK10Q6ZWH5 1172 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 MAATS1Q7Z4T9 603 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 PALB2Q86YC2 1186 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 STAG2Q8N3U4 1231 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 HELQQ8TDG4 1101 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 JAKMIP1Q96N16 626 aaKnown RBP8.64□□□□□ -1.03
LIMS1-203ENST00000393310 NR1H4Q96RI1 486 aaPredicted RBP8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms