RNA–Protein interactions for RNA: ENST00000372232.7

ATG4A-203, Transcript of autophagy related 4A cysteine peptidase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ATG4A, Length 2,315 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-203ENST00000372232 DDX23Q9BUQ8 820 aaKnown RBP9.4□□□□□ -0.9
ATG4A-203ENST00000372232 LRMDAQ9H2I8 198 aa9.4□□□□□ -0.9
ATG4A-203ENST00000372232 C12orf49Q9H741 205 aa9.4□□□□□ -0.9
ATG4A-203ENST00000372232 DCLRE1BQ9H816 532 aa9.4□□□□□ -0.9
ATG4A-203ENST00000372232 C6orf50Q9HD87 102 aa9.4□□□□□ -0.9
ATG4A-203ENST00000372232 EXOC1Q9NV70 894 aa9.4□□□□□ -0.9
ATG4A-203ENST00000372232 DDX43Q9NXZ2 648 aaKnown RBP9.4□□□□□ -0.9
ATG4A-203ENST00000372232 STK32BQ9NY57 414 aa9.4□□□□□ -0.9
ATG4A-203ENST00000372232 MTMR4Q9NYA4 1195 aa9.4□□□□□ -0.9
ATG4A-203ENST00000372232 BTBD7Q9P203 1132 aa9.4□□□□□ -0.9
ATG4A-203ENST00000372232 SEC63Q9UGP8 760 aaKnown RBP9.4□□□□□ -0.9
ATG4A-203ENST00000372232 TRIM33Q9UPN9 1127 aa9.4□□□□□ -0.9
ATG4A-203ENST00000372232 USP20Q9Y2K6 914 aa9.4□□□□□ -0.9
ATG4A-203ENST00000372232 LRRC37AA6NMS7 1700 aa9.4□□□□□ -0.9
ATG4A-203ENST00000372232 PP2D1A8MPX8 630 aa9.4□□□□□ -0.9
ATG4A-203ENST00000372232 STRNO43815 780 aa9.4□□□□□ -0.9
ATG4A-203ENST00000372232 SUN1O94901 812 aa9.4□□□□□ -0.9
ATG4A-203ENST00000372232 RPN1P04843 607 aaKnown RBP9.4□□□□□ -0.9
ATG4A-203ENST00000372232 INHAP05111 366 aa9.4□□□□□ -0.9
ATG4A-203ENST00000372232 ECHS1P30084 290 aa9.4□□□□□ -0.9
ATG4A-203ENST00000372232 CYLC2Q14093 348 aaPredicted RBP9.4□□□□□ -0.9
ATG4A-203ENST00000372232 R3HDM1Q15032 1099 aaKnown RBP9.4□□□□□ -0.9
ATG4A-203ENST00000372232 ZNF658Q5TYW1 1059 aaPredicted RBP9.4□□□□□ -0.9
ATG4A-203ENST00000372232 RRAGBQ5VZM2 374 aa9.4□□□□□ -0.9
ATG4A-203ENST00000372232 MARK2Q7KZI7 788 aaKnown RBP9.4□□□□□ -0.9
ATG4A-203ENST00000372232 MIGA2Q7L4E1 593 aa9.4□□□□□ -0.9
ATG4A-203ENST00000372232 ERMP1Q7Z2K6 904 aa9.4□□□□□ -0.9
ATG4A-203ENST00000372232 KRT25Q7Z3Z0 450 aa9.4□□□□□ -0.9
ATG4A-203ENST00000372232 ZC3H18Q86VM9 953 aaKnown RBP9.4□□□□□ -0.9
ATG4A-203ENST00000372232 LRRC49Q8IUZ0 686 aa9.4□□□□□ -0.9
ATG4A-203ENST00000372232 SCAIQ8N9R8 606 aa9.4□□□□□ -0.9
ATG4A-203ENST00000372232 FAM13CQ8NE31 585 aa9.4□□□□□ -0.9
ATG4A-203ENST00000372232 NELFBQ8WX92 580 aa9.4□□□□□ -0.9
ATG4A-203ENST00000372232 GFM2Q969S9 779 aaKnown RBP9.4□□□□□ -0.9
ATG4A-203ENST00000372232 MPP4Q96JB8 637 aa9.4□□□□□ -0.9
ATG4A-203ENST00000372232 DEPDC7Q96QD5 511 aa9.4□□□□□ -0.9
ATG4A-203ENST00000372232 PIGSQ96S52 555 aa9.4□□□□□ -0.9
ATG4A-203ENST00000372232 TRIM55Q9BYV6 548 aa9.4□□□□□ -0.9
ATG4A-203ENST00000372232 ISCUQ9H1K1 167 aa9.4□□□□□ -0.9
ATG4A-203ENST00000372232 EPB41L1Q9H4G0 881 aa9.4□□□□□ -0.9
ATG4A-203ENST00000372232 RIOX1Q9H6W3 641 aa9.4□□□□□ -0.9
ATG4A-203ENST00000372232 VAT1LQ9HCJ6 419 aa9.4□□□□□ -0.9
ATG4A-203ENST00000372232 DDX4Q9NQI0 724 aaKnown RBP9.4□□□□□ -0.9
ATG4A-203ENST00000372232 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.4□□□□□ -0.9
ATG4A-203ENST00000372232 RWDD2AQ9UIY3 292 aa9.4□□□□□ -0.9
ATG4A-203ENST00000372232 CTNND2Q9UQB3 1225 aa9.4□□□□□ -0.9
ATG4A-203ENST00000372232 CDK5RAP2Q96SN8 1893 aa9.4□□□□□ -0.91
ATG4A-203ENST00000372232 IGKV6D-41A0A0C4DH26 115 aa9.39□□□□□ -0.91
ATG4A-203ENST00000372232 ERVH48-1M5A8F1 160 aa9.39□□□□□ -0.91
ATG4A-203ENST00000372232 TLL1O43897 1013 aa9.39□□□□□ -0.91
ATG4A-203ENST00000372232 KDM1AO60341 852 aa9.39□□□□□ -0.91
ATG4A-203ENST00000372232 SERPINB3P29508 390 aa9.39□□□□□ -0.91
ATG4A-203ENST00000372232 UBA7P41226 1012 aa9.39□□□□□ -0.91
ATG4A-203ENST00000372232 MMP13P45452 471 aa9.39□□□□□ -0.91
ATG4A-203ENST00000372232 TBX4P57082 545 aa9.39□□□□□ -0.91
ATG4A-203ENST00000372232 ITGA9Q13797 1035 aa9.39□□□□□ -0.91
ATG4A-203ENST00000372232 NONOQ15233 471 aaKnown RBP eCLIP9.39□□□□□ -0.91
ATG4A-203ENST00000372232 TAF1CQ15572 869 aaPredicted RBP9.39□□□□□ -0.91
ATG4A-203ENST00000372232 NFRKBQ6P4R8 1299 aa9.39□□□□□ -0.91
ATG4A-203ENST00000372232 WDR59Q6PJI9 974 aa9.39□□□□□ -0.91
ATG4A-203ENST00000372232 DPP8Q6V1X1 898 aaPredicted RBP9.39□□□□□ -0.91
ATG4A-203ENST00000372232 COL23A1Q86Y22 540 aaPredicted RBP9.39□□□□□ -0.91
ATG4A-203ENST00000372232 RAVER1Q8IY67 606 aaKnown RBP9.39□□□□□ -0.91
ATG4A-203ENST00000372232 CACTIN-AS1Q8N1I8 211 aa9.39□□□□□ -0.91
ATG4A-203ENST00000372232 MXD3Q9BW11 206 aa9.39□□□□□ -0.91
ATG4A-203ENST00000372232 CCSER1Q9C0I3 900 aa9.39□□□□□ -0.91
ATG4A-203ENST00000372232 SYNCQ9H7C4 482 aa9.39□□□□□ -0.91
ATG4A-203ENST00000372232 TIMMDC1Q9NPL8 285 aa9.39□□□□□ -0.91
ATG4A-203ENST00000372232 SMARCAL1Q9NZC9 954 aa9.39□□□□□ -0.91
ATG4A-203ENST00000372232 KLK14Q9P0G3 267 aa9.39□□□□□ -0.91
ATG4A-203ENST00000372232 DKK3Q9UBP4 350 aa9.39□□□□□ -0.91
ATG4A-203ENST00000372232 CARD8Q9Y2G2 431 aa9.39□□□□□ -0.91
ATG4A-203ENST00000372232 ZNF711Q9Y462 761 aa9.39□□□□□ -0.91
ATG4A-203ENST00000372232 ESYT2A0FGR8 921 aa9.39□□□□□ -0.91
ATG4A-203ENST00000372232 TTI1O43156 1089 aa9.39□□□□□ -0.91
ATG4A-203ENST00000372232 CCNT1O60563 726 aaKnown RBP9.39□□□□□ -0.91
ATG4A-203ENST00000372232 AFPP02771 609 aaKnown RBP9.39□□□□□ -0.91
ATG4A-203ENST00000372232 SNHG28P0DPA3 235 aa9.39□□□□□ -0.91
ATG4A-203ENST00000372232 AKR1B1P15121 316 aa9.39□□□□□ -0.91
ATG4A-203ENST00000372232 TXKP42681 527 aa9.39□□□□□ -0.91
ATG4A-203ENST00000372232 CUL1Q13616 776 aa9.39□□□□□ -0.91
ATG4A-203ENST00000372232 LETM2Q2VYF4 491 aa9.39□□□□□ -0.91
ATG4A-203ENST00000372232 NEK8Q86SG6 692 aa9.39□□□□□ -0.91
ATG4A-203ENST00000372232 FITM2Q8N6M3 262 aa9.39□□□□□ -0.91
ATG4A-203ENST00000372232 FNDC8Q8TC99 324 aa9.39□□□□□ -0.91
ATG4A-203ENST00000372232 IER2Q9BTL4 223 aa9.39□□□□□ -0.91
ATG4A-203ENST00000372232 ADAM7Q9H2U9 754 aa9.39□□□□□ -0.91
ATG4A-203ENST00000372232 TXLNGQ9NUQ3 528 aa9.39□□□□□ -0.91
ATG4A-203ENST00000372232 USP40Q9NVE5 1235 aa9.39□□□□□ -0.91
ATG4A-203ENST00000372232 EHD2Q9NZN4 543 aa9.39□□□□□ -0.91
ATG4A-203ENST00000372232 SERPINB13Q9UIV8 391 aa9.39□□□□□ -0.91
ATG4A-203ENST00000372232 MYH7BA7E2Y1 1941 aa9.39□□□□□ -0.91
ATG4A-203ENST00000372232 SMIM31A0A1B0GVY4 71 aa9.38□□□□□ -0.91
ATG4A-203ENST00000372232 MACROD2A1Z1Q3 448 aa9.38□□□□□ -0.91
ATG4A-203ENST00000372232 BHMG1C9JSJ3 638 aaPredicted RBP9.38□□□□□ -0.91
ATG4A-203ENST00000372232 MAGEB3O15480 346 aa9.38□□□□□ -0.91
ATG4A-203ENST00000372232 COBLO75128 1261 aa9.38□□□□□ -0.91
ATG4A-203ENST00000372232 ATP5HO75947 161 aa9.38□□□□□ -0.91
ATG4A-203ENST00000372232 OR52Z1P0C646 297 aa9.38□□□□□ -0.91
ATG4A-203ENST00000372232 ENDOUP21128 410 aaKnown RBP9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms