RNA–Protein interactions for RNA: ENST00000371621.4

PTPN1-201, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN1, Length 4,008 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-201ENST00000371621 DAPK2Q9UIK4 370 aa12.4□□□□□ -0.42
PTPN1-201ENST00000371621 BARX2Q9UMQ3 279 aaPredicted RBP12.4□□□□□ -0.42
PTPN1-201ENST00000371621 PLEKHG1Q9ULL1 1385 aa12.4□□□□□ -0.42
PTPN1-201ENST00000371621 PCP4L1A6NKN8 68 aa12.4□□□□□ -0.42
PTPN1-201ENST00000371621 AGRPO00253 132 aa12.4□□□□□ -0.42
PTPN1-201ENST00000371621 ASMTLO95671 621 aa12.4□□□□□ -0.42
PTPN1-201ENST00000371621 GCLMP48507 274 aa12.4□□□□□ -0.42
PTPN1-201ENST00000371621 CHN2P52757 468 aa12.4□□□□□ -0.42
PTPN1-201ENST00000371621 AQP5P55064 265 aa12.4□□□□□ -0.42
PTPN1-201ENST00000371621 SLC25A3Q00325 362 aa12.4□□□□□ -0.42
PTPN1-201ENST00000371621 PARP6Q2NL67 630 aa12.4□□□□□ -0.42
PTPN1-201ENST00000371621 TRMT5Q32P41 509 aaKnown RBP12.4□□□□□ -0.42
PTPN1-201ENST00000371621 USH1GQ495M9 461 aa12.4□□□□□ -0.42
PTPN1-201ENST00000371621 CERKLQ49MI3 558 aaPredicted RBP12.4□□□□□ -0.42
PTPN1-201ENST00000371621 ODR4Q5SWX8 454 aa12.4□□□□□ -0.42
PTPN1-201ENST00000371621 RNF43Q68DV7 783 aa12.4□□□□□ -0.42
PTPN1-201ENST00000371621 KRT28Q7Z3Y7 464 aa12.4□□□□□ -0.42
PTPN1-201ENST00000371621 PRUNE1Q86TP1 453 aa12.4□□□□□ -0.42
PTPN1-201ENST00000371621 PASD1Q8IV76 773 aa12.4□□□□□ -0.42
PTPN1-201ENST00000371621 ZNF75CPQ92670 426 aaPredicted RBP12.4□□□□□ -0.42
PTPN1-201ENST00000371621 FAM217BQ9NTX9 383 aaPredicted RBP12.4□□□□□ -0.42
PTPN1-201ENST00000371621 PRKAG3Q9UGI9 489 aa12.4□□□□□ -0.42
PTPN1-201ENST00000371621 PRELID1Q9Y255 219 aa12.4□□□□□ -0.42
PTPN1-201ENST00000371621 CHKBQ9Y259 395 aa12.4□□□□□ -0.42
PTPN1-201ENST00000371621 ZC3H13Q5T200 1668 aaKnown RBP12.4□□□□□ -0.43
PTPN1-201ENST00000371621 POTEB3A0JP26 581 aa12.4□□□□□ -0.43
PTPN1-201ENST00000371621 POTEFA5A3E0 1075 aa12.4□□□□□ -0.43
PTPN1-201ENST00000371621 POTECB2RU33 542 aa12.4□□□□□ -0.43
PTPN1-201ENST00000371621 GSC2O15499 205 aa12.4□□□□□ -0.43
PTPN1-201ENST00000371621 CCDC166P0CW27 439 aa12.4□□□□□ -0.43
PTPN1-201ENST00000371621 PSMC3P17980 439 aa12.4□□□□□ -0.43
PTPN1-201ENST00000371621 NEK2P51955 445 aa12.4□□□□□ -0.43
PTPN1-201ENST00000371621 SF3B3Q15393 1217 aaKnown RBP12.4□□□□□ -0.43
PTPN1-201ENST00000371621 EFHC1Q5JVL4 640 aa12.4□□□□□ -0.43
PTPN1-201ENST00000371621 RSBN1LQ6PCB5 846 aaPredicted RBP12.4□□□□□ -0.43
PTPN1-201ENST00000371621 POTEBQ6S5H4 581 aa12.4□□□□□ -0.43
PTPN1-201ENST00000371621 GPR141Q7Z602 305 aa12.4□□□□□ -0.43
PTPN1-201ENST00000371621 SLF2Q8IX21 1173 aa12.4□□□□□ -0.43
PTPN1-201ENST00000371621 GLIS3Q8NEA6 775 aa12.4□□□□□ -0.43
PTPN1-201ENST00000371621 GSTCDQ8NEC7 633 aa12.4□□□□□ -0.43
PTPN1-201ENST00000371621 PIGSQ96S52 555 aa12.4□□□□□ -0.43
PTPN1-201ENST00000371621 EBF3Q9H4W6 596 aa12.4□□□□□ -0.43
PTPN1-201ENST00000371621 LIN28AQ9H9Z2 209 aaKnown RBP12.4□□□□□ -0.43
PTPN1-201ENST00000371621 AURKCQ9UQB9 309 aa12.4□□□□□ -0.43
PTPN1-201ENST00000371621 DIP2BQ9P265 1576 aa12.39□□□□□ -0.43
PTPN1-201ENST00000371621 TMEM131LA2VDJ0 1609 aa12.39□□□□□ -0.43
PTPN1-201ENST00000371621 SMIM31A0A1B0GVY4 71 aa12.39□□□□□ -0.43
PTPN1-201ENST00000371621 WDR64B1ANS9 1081 aa12.39□□□□□ -0.43
PTPN1-201ENST00000371621 MFN2O95140 757 aa12.39□□□□□ -0.43
PTPN1-201ENST00000371621 MSX2P35548 267 aaPredicted RBP12.39□□□□□ -0.43
PTPN1-201ENST00000371621 NCKAP1LP55160 1127 aa12.39□□□□□ -0.43
PTPN1-201ENST00000371621 PFKFB3Q16875 520 aaPredicted RBP12.39□□□□□ -0.43
PTPN1-201ENST00000371621 THOC7Q6I9Y2 204 aaKnown RBP12.39□□□□□ -0.43
PTPN1-201ENST00000371621 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.39□□□□□ -0.43
PTPN1-201ENST00000371621 DYNLL2Q96FJ2 89 aa12.39□□□□□ -0.43
PTPN1-201ENST00000371621 EFHD1Q9BUP0 239 aa12.39□□□□□ -0.43
PTPN1-201ENST00000371621 PALLDQ8WX93 1383 aa12.39□□□□□ -0.43
PTPN1-201ENST00000371621 CAPN8A6NHC0 703 aa12.39□□□□□ -0.43
PTPN1-201ENST00000371621 TAF4O00268 1085 aa12.39□□□□□ -0.43
PTPN1-201ENST00000371621 LAD1O00515 517 aa12.39□□□□□ -0.43
PTPN1-201ENST00000371621 CYTH3O43739 400 aa12.39□□□□□ -0.43
PTPN1-201ENST00000371621 GPC4O75487 556 aa12.39□□□□□ -0.43
PTPN1-201ENST00000371621 TDP2O95551 362 aa12.39□□□□□ -0.43
PTPN1-201ENST00000371621 NR3C1P04150 777 aa12.39□□□□□ -0.43
PTPN1-201ENST00000371621 KRT1P04264 644 aa12.39□□□□□ -0.43
PTPN1-201ENST00000371621 TFPTP0C1Z6 253 aa12.39□□□□□ -0.43
PTPN1-201ENST00000371621 RRP1BQ14684 758 aaKnown RBP12.39□□□□□ -0.43
PTPN1-201ENST00000371621 PCGF5Q86SE9 256 aa12.39□□□□□ -0.43
PTPN1-201ENST00000371621 PROM2Q8N271 834 aa12.39□□□□□ -0.43
PTPN1-201ENST00000371621 ATL2Q8NHH9 583 aa12.39□□□□□ -0.43
PTPN1-201ENST00000371621 KRT35Q92764 455 aa12.39□□□□□ -0.43
PTPN1-201ENST00000371621 HBS1LQ9Y450 684 aaKnown RBP12.39□□□□□ -0.43
PTPN1-201ENST00000371621 TELO2Q9Y4R8 837 aa12.39□□□□□ -0.43
PTPN1-201ENST00000371621 NEURL4Q96JN8 1562 aa12.39□□□□□ -0.43
PTPN1-201ENST00000371621 ARHGEF28Q8N1W1 1705 aaKnown RBP12.39□□□□□ -0.43
PTPN1-201ENST00000371621 WDR19Q8NEZ3 1342 aa12.39□□□□□ -0.43
PTPN1-201ENST00000371621 FAM237AA0A1B0GTK4 181 aa12.39□□□□□ -0.43
PTPN1-201ENST00000371621 PVALEFA0A1B0GWK0 134 aa12.39□□□□□ -0.43
PTPN1-201ENST00000371621 GOLGA8IPA6NC78 632 aa12.39□□□□□ -0.43
PTPN1-201ENST00000371621 PALM3A6NDB9 673 aaPredicted RBP12.39□□□□□ -0.43
PTPN1-201ENST00000371621 GOLGA8JA6NMD2 632 aa12.39□□□□□ -0.43
PTPN1-201ENST00000371621 F5H423 210 aaPredicted RBP12.39□□□□□ -0.43
PTPN1-201ENST00000371621 H7C0C1 242 aa12.39□□□□□ -0.43
PTPN1-201ENST00000371621 KIAA0391O15091 583 aaKnown RBP12.39□□□□□ -0.43
PTPN1-201ENST00000371621 CIAO1O76071 339 aa12.39□□□□□ -0.43
PTPN1-201ENST00000371621 AMPD1P23109 780 aa12.39□□□□□ -0.43
PTPN1-201ENST00000371621 ATP5OP48047 213 aa12.39□□□□□ -0.43
PTPN1-201ENST00000371621 GSTA3Q16772 222 aa12.39□□□□□ -0.43
PTPN1-201ENST00000371621 WDR44Q5JSH3 913 aa12.39□□□□□ -0.43
PTPN1-201ENST00000371621 USP17L6PQ6QN14 398 aa12.39□□□□□ -0.43
PTPN1-201ENST00000371621 TMPRSS6Q8IU80 811 aa12.39□□□□□ -0.43
PTPN1-201ENST00000371621 DEFB107AQ8IZN7 70 aa12.39□□□□□ -0.43
PTPN1-201ENST00000371621 SCFD2Q8WU76 684 aa12.39□□□□□ -0.43
PTPN1-201ENST00000371621 OMA1Q96E52 524 aa12.39□□□□□ -0.43
PTPN1-201ENST00000371621 NRBF2Q96F24 287 aa12.39□□□□□ -0.43
PTPN1-201ENST00000371621 CCSER1Q9C0I3 900 aa12.39□□□□□ -0.43
PTPN1-201ENST00000371621 RNPEPQ9H4A4 650 aa12.39□□□□□ -0.43
PTPN1-201ENST00000371621 OCEL1Q9H607 264 aa12.39□□□□□ -0.43
PTPN1-201ENST00000371621 CNOT7Q9UIV1 285 aaKnown RBP12.39□□□□□ -0.43
PTPN1-201ENST00000371621 PJA2O43164 708 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms