RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 PARP2Q9UGN5 583 aa9.43□□□□□ -0.9
HMGB1P39-201ENST00000366304 VAV3Q9UKW4 847 aa9.43□□□□□ -0.9
HMGB1P39-201ENST00000366304 USP20Q9Y2K6 914 aa9.43□□□□□ -0.9
HMGB1P39-201ENST00000366304 CFAP46Q8IYW2 2715 aa9.42□□□□□ -0.9
HMGB1P39-201ENST00000366304 CELSR3Q9NYQ7 3312 aa9.42□□□□□ -0.9
HMGB1P39-201ENST00000366304 CYP3A7-CYP3A51PA0A087WV96 503 aa9.42□□□□□ -0.9
HMGB1P39-201ENST00000366304 LNP1A1A4G5 178 aa9.42□□□□□ -0.9
HMGB1P39-201ENST00000366304 GOLGA8AA7E2F4 631 aa9.42□□□□□ -0.9
HMGB1P39-201ENST00000366304 GOLGA8BA8MQT2 603 aa9.42□□□□□ -0.9
HMGB1P39-201ENST00000366304 HEPACAM2A8MVW5 462 aa9.42□□□□□ -0.9
HMGB1P39-201ENST00000366304 SPECC1L-ADORA2AF8WAN1 911 aa9.42□□□□□ -0.9
HMGB1P39-201ENST00000366304 INO80B-WBP1J3KQ70 363 aa9.42□□□□□ -0.9
HMGB1P39-201ENST00000366304 ZBTB43O43298 467 aa9.42□□□□□ -0.9
HMGB1P39-201ENST00000366304 HYAL3O43820 417 aaPredicted RBP9.42□□□□□ -0.9
HMGB1P39-201ENST00000366304 SLC37A4O43826 429 aa9.42□□□□□ -0.9
HMGB1P39-201ENST00000366304 ABLIM3O94929 683 aa9.42□□□□□ -0.9
HMGB1P39-201ENST00000366304 PTPN2P17706 415 aa9.42□□□□□ -0.9
HMGB1P39-201ENST00000366304 CYP3A7P24462 503 aa9.42□□□□□ -0.9
HMGB1P39-201ENST00000366304 AXLP30530 894 aa9.42□□□□□ -0.9
HMGB1P39-201ENST00000366304 USP11P51784 963 aa9.42□□□□□ -0.9
HMGB1P39-201ENST00000366304 ROR1Q01973 937 aa9.42□□□□□ -0.9
HMGB1P39-201ENST00000366304 PON2Q15165 354 aa9.42□□□□□ -0.9
HMGB1P39-201ENST00000366304 PLK5Q496M5 336 aa9.42□□□□□ -0.9
HMGB1P39-201ENST00000366304 C19orf48Q6RUI8 117 aa9.42□□□□□ -0.9
HMGB1P39-201ENST00000366304 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.42□□□□□ -0.9
HMGB1P39-201ENST00000366304 CACNA2D4Q7Z3S7 1137 aa9.42□□□□□ -0.9
HMGB1P39-201ENST00000366304 ZSCAN18Q8TBC5 510 aaPredicted RBP9.42□□□□□ -0.9
HMGB1P39-201ENST00000366304 SLC7A3Q8WY07 619 aa9.42□□□□□ -0.9
HMGB1P39-201ENST00000366304 CHFRQ96EP1 664 aa9.42□□□□□ -0.9
HMGB1P39-201ENST00000366304 ZFYVE19Q96K21 471 aa9.42□□□□□ -0.9
HMGB1P39-201ENST00000366304 EDEM2Q9BV94 578 aa9.42□□□□□ -0.9
HMGB1P39-201ENST00000366304 TRPV4Q9HBA0 871 aa9.42□□□□□ -0.9
HMGB1P39-201ENST00000366304 C6orf50Q9HD87 102 aa9.42□□□□□ -0.9
HMGB1P39-201ENST00000366304 VPS45Q9NRW7 570 aa9.42□□□□□ -0.9
HMGB1P39-201ENST00000366304 CEP72Q9P209 647 aa9.42□□□□□ -0.9
HMGB1P39-201ENST00000366304 KLK13Q9UKR3 277 aa9.42□□□□□ -0.9
HMGB1P39-201ENST00000366304 KLF18A0A0U1RQI7 1052 aa9.41□□□□□ -0.9
HMGB1P39-201ENST00000366304 A0A1B0GUA9 196 aa9.41□□□□□ -0.9
HMGB1P39-201ENST00000366304 MYBPHLA2RUH7 354 aa9.41□□□□□ -0.9
HMGB1P39-201ENST00000366304 CDX4O14627 284 aaPredicted RBP9.41□□□□□ -0.9
HMGB1P39-201ENST00000366304 ZNF263O14978 683 aa9.41□□□□□ -0.9
HMGB1P39-201ENST00000366304 EDN1P05305 212 aa9.41□□□□□ -0.9
HMGB1P39-201ENST00000366304 CTHP32929 405 aa9.41□□□□□ -0.9
HMGB1P39-201ENST00000366304 RFC5P40937 340 aa9.41□□□□□ -0.9
HMGB1P39-201ENST00000366304 BRCC3P46736 316 aa9.41□□□□□ -0.9
HMGB1P39-201ENST00000366304 QARSP47897 775 aaKnown RBP9.41□□□□□ -0.9
HMGB1P39-201ENST00000366304 MLLT6P55198 1093 aaPredicted RBP9.41□□□□□ -0.9
HMGB1P39-201ENST00000366304 LRRC32Q14392 662 aa9.41□□□□□ -0.9
HMGB1P39-201ENST00000366304 TEAD2Q15562 447 aa9.41□□□□□ -0.9
HMGB1P39-201ENST00000366304 ADCK5Q3MIX3 580 aa9.41□□□□□ -0.9
HMGB1P39-201ENST00000366304 STXBP5Q5T5C0 1151 aa9.41□□□□□ -0.9
HMGB1P39-201ENST00000366304 MFSD6LQ8IWD5 586 aa9.41□□□□□ -0.9
HMGB1P39-201ENST00000366304 SHKBP1Q8TBC3 707 aa9.41□□□□□ -0.9
HMGB1P39-201ENST00000366304 TBCKQ8TEA7 893 aa9.41□□□□□ -0.9
HMGB1P39-201ENST00000366304 ZC3H10Q96K80 434 aaKnown RBP9.41□□□□□ -0.9
HMGB1P39-201ENST00000366304 MTRQ99707 1265 aa9.41□□□□□ -0.9
HMGB1P39-201ENST00000366304 JPH2Q9BR39 696 aaPredicted RBP9.41□□□□□ -0.9
HMGB1P39-201ENST00000366304 DUSP15Q9H1R2 295 aaPredicted RBP9.41□□□□□ -0.9
HMGB1P39-201ENST00000366304 RWDD1Q9H446 243 aaPredicted RBP9.41□□□□□ -0.9
HMGB1P39-201ENST00000366304 GTSE1Q9NYZ3 720 aa9.41□□□□□ -0.9
HMGB1P39-201ENST00000366304 RGL1Q9NZL6 768 aa9.41□□□□□ -0.9
HMGB1P39-201ENST00000366304 VPS54Q9P1Q0 977 aa9.41□□□□□ -0.9
HMGB1P39-201ENST00000366304 GPSM3Q9Y4H4 160 aa9.41□□□□□ -0.9
HMGB1P39-201ENST00000366304 PCDHGA5Q9Y5G8 931 aa9.41□□□□□ -0.9
HMGB1P39-201ENST00000366304 BACE2Q9Y5Z0 518 aa9.41□□□□□ -0.9
HMGB1P39-201ENST00000366304 ZMYM2Q9UBW7 1377 aa9.4□□□□□ -0.9
HMGB1P39-201ENST00000366304 PATE3B3GLJ2 98 aa9.4□□□□□ -0.9
HMGB1P39-201ENST00000366304 TBX3O15119 743 aa9.4□□□□□ -0.9
HMGB1P39-201ENST00000366304 RECQL4O94761 1208 aa9.4□□□□□ -0.9
HMGB1P39-201ENST00000366304 MICAL2O94851 1124 aa9.4□□□□□ -0.9
HMGB1P39-201ENST00000366304 VNN2O95498 520 aa9.4□□□□□ -0.9
HMGB1P39-201ENST00000366304 GLRA2P23416 452 aa9.4□□□□□ -0.9
HMGB1P39-201ENST00000366304 RBM25P49756 843 aaKnown RBP9.4□□□□□ -0.9
HMGB1P39-201ENST00000366304 KPNA1P52294 538 aaPredicted RBP9.4□□□□□ -0.9
HMGB1P39-201ENST00000366304 TNK2Q07912 1038 aa9.4□□□□□ -0.9
HMGB1P39-201ENST00000366304 SPIRE1Q08AE8 756 aa9.4□□□□□ -0.9
HMGB1P39-201ENST00000366304 FCHO2Q0JRZ9 810 aa9.4□□□□□ -0.9
HMGB1P39-201ENST00000366304 NPY5RQ15761 445 aa9.4□□□□□ -0.9
HMGB1P39-201ENST00000366304 SLC8B1Q6J4K2 584 aa9.4□□□□□ -0.9
HMGB1P39-201ENST00000366304 SLC27A1Q6PCB7 646 aa9.4□□□□□ -0.9
HMGB1P39-201ENST00000366304 SYNE3Q6ZMZ3 975 aa9.4□□□□□ -0.9
HMGB1P39-201ENST00000366304 RTL10Q7L3V2 364 aa9.4□□□□□ -0.9
HMGB1P39-201ENST00000366304 PDZD3Q86UT5 571 aa9.4□□□□□ -0.9
HMGB1P39-201ENST00000366304 DEFB124Q8NES8 71 aa9.4□□□□□ -0.9
HMGB1P39-201ENST00000366304 ZNF461Q8TAF7 563 aa9.4□□□□□ -0.9
HMGB1P39-201ENST00000366304 DEPDC1BQ8WUY9 529 aa9.4□□□□□ -0.9
HMGB1P39-201ENST00000366304 MKNK1Q9BUB5 465 aa9.4□□□□□ -0.9
HMGB1P39-201ENST00000366304 LRRC3Q9BY71 257 aa9.4□□□□□ -0.9
HMGB1P39-201ENST00000366304 TRIM6Q9C030 488 aaPredicted RBP9.4□□□□□ -0.9
HMGB1P39-201ENST00000366304 GOLGA2P5Q9HBQ8 144 aa9.4□□□□□ -0.9
HMGB1P39-201ENST00000366304 INSL5Q9Y5Q6 135 aa9.4□□□□□ -0.9
HMGB1P39-201ENST00000366304 CACNA1EQ15878 2313 aa9.4□□□□□ -0.9
HMGB1P39-201ENST00000366304 KALRNO60229 2985 aa9.39□□□□□ -0.91
HMGB1P39-201ENST00000366304 EML5Q05BV3 1969 aa9.39□□□□□ -0.91
HMGB1P39-201ENST00000366304 A0A087WWV3 80 aa9.39□□□□□ -0.91
HMGB1P39-201ENST00000366304 BCLAF3A2AJT9 711 aaKnown RBP9.39□□□□□ -0.91
HMGB1P39-201ENST00000366304 OTOL1A6NHN0 477 aaPredicted RBP9.39□□□□□ -0.91
HMGB1P39-201ENST00000366304 M0R2N6 131 aa9.39□□□□□ -0.91
HMGB1P39-201ENST00000366304 ASAP2O43150 1006 aa9.39□□□□□ -0.91
HMGB1P39-201ENST00000366304 PRPF3O43395 683 aaKnown RBP9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms