RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 KLK14Q9P0G3 267 aa20.05■□□□□ 0.8
CLN3-204ENST00000357857 R3HCC1Q9Y3T6 440 aaKnown RBP20.05■□□□□ 0.8
CLN3-204ENST00000357857 DNAH12Q6ZR08 3092 aa20.05■□□□□ 0.8
CLN3-204ENST00000357857 SGPL1O95470 568 aa20.05■□□□□ 0.8
CLN3-204ENST00000357857 TFRCP02786 760 aaKnown RBP20.05■□□□□ 0.8
CLN3-204ENST00000357857 POLR2BP30876 1174 aaKnown RBP20.05■□□□□ 0.8
CLN3-204ENST00000357857 ATICP31939 592 aa20.05■□□□□ 0.8
CLN3-204ENST00000357857 ARHGAP25P42331 645 aa20.05■□□□□ 0.8
CLN3-204ENST00000357857 MAGEA1P43355 309 aa20.05■□□□□ 0.8
CLN3-204ENST00000357857 RBP5P82980 135 aa20.05■□□□□ 0.8
CLN3-204ENST00000357857 DSC3Q14574 896 aa20.05■□□□□ 0.8
CLN3-204ENST00000357857 ZBTB6Q15916 424 aa20.05■□□□□ 0.8
CLN3-204ENST00000357857 XKR4Q5GH76 650 aa20.05■□□□□ 0.8
CLN3-204ENST00000357857 ZNF662Q6ZS27 426 aa20.05■□□□□ 0.8
CLN3-204ENST00000357857 TMEM130Q8N3G9 435 aa20.05■□□□□ 0.8
CLN3-204ENST00000357857 BEST2Q8NFU1 509 aa20.05■□□□□ 0.8
CLN3-204ENST00000357857 ARMC5Q96C12 935 aa20.05■□□□□ 0.8
CLN3-204ENST00000357857 LUC7LQ9NQ29 371 aaKnown RBP20.05■□□□□ 0.8
CLN3-204ENST00000357857 AGAP1Q9UPQ3 857 aa20.05■□□□□ 0.8
CLN3-204ENST00000357857 CD4P01730 458 aa20.04■□□□□ 0.8
CLN3-204ENST00000357857 KCNE1P15382 129 aa20.04■□□□□ 0.8
CLN3-204ENST00000357857 ACO1P21399 889 aaKnown RBP20.04■□□□□ 0.8
CLN3-204ENST00000357857 BFSP2Q13515 415 aa20.04■□□□□ 0.8
CLN3-204ENST00000357857 ZNF667Q5HYK9 610 aa20.04■□□□□ 0.8
CLN3-204ENST00000357857 GLRA4Q5JXX5 417 aa20.04■□□□□ 0.8
CLN3-204ENST00000357857 TXLNBQ8N3L3 684 aa20.04■□□□□ 0.8
CLN3-204ENST00000357857 AGPAT1Q99943 283 aa20.04■□□□□ 0.8
CLN3-204ENST00000357857 UBQLN1Q9UMX0 589 aaKnown RBP20.04■□□□□ 0.8
CLN3-204ENST00000357857 PCDHB4Q9Y5E5 795 aa20.04■□□□□ 0.8
CLN3-204ENST00000357857 DDX3XO00571 662 aaKnown RBP eCLIP20.03■□□□□ 0.81e-10■■■□□ 15.1
CLN3-204ENST00000357857 MGEA5O60502 916 aa20.03■□□□□ 0.8
CLN3-204ENST00000357857 TUBB4AP04350 444 aa20.03■□□□□ 0.8
CLN3-204ENST00000357857 ITGA4P13612 1032 aa20.03■□□□□ 0.8
CLN3-204ENST00000357857 TNFAIP3P21580 790 aa20.03■□□□□ 0.8
CLN3-204ENST00000357857 CTCFP49711 727 aaPredicted RBP20.03■□□□□ 0.8
CLN3-204ENST00000357857 RAB27AP51159 221 aa20.03■□□□□ 0.8
CLN3-204ENST00000357857 OLIG1Q8TAK6 271 aa20.03■□□□□ 0.8
CLN3-204ENST00000357857 LNX1Q8TBB1 728 aaPredicted RBP20.03■□□□□ 0.8
CLN3-204ENST00000357857 EPS8L1Q8TE68 723 aa20.03■□□□□ 0.8
CLN3-204ENST00000357857 FAXDC2Q96IV6 333 aa20.03■□□□□ 0.8
CLN3-204ENST00000357857 TRAIPQ9BWF2 469 aa20.03■□□□□ 0.8
CLN3-204ENST00000357857 VRTNQ9H8Y1 702 aa20.03■□□□□ 0.8
CLN3-204ENST00000357857 TFR2Q9UP52 801 aa20.03■□□□□ 0.8
CLN3-204ENST00000357857 SCN1AP35498 2009 aa20.03■□□□□ 0.8
CLN3-204ENST00000357857 SMIM28A0A1B0GU29 152 aa20.02■□□□□ 0.8
CLN3-204ENST00000357857 RCCD1A6NED2 376 aa20.02■□□□□ 0.8
CLN3-204ENST00000357857 TLR3O15455 904 aaKnown RBP20.02■□□□□ 0.8
CLN3-204ENST00000357857 XPOTO43592 962 aaKnown RBP20.02■□□□□ 0.8
CLN3-204ENST00000357857 SELPP16109 830 aa20.02■□□□□ 0.8
CLN3-204ENST00000357857 MNX1P50219 401 aaPredicted RBP20.02■□□□□ 0.8
CLN3-204ENST00000357857 PDE6CP51160 858 aa20.02■□□□□ 0.8
CLN3-204ENST00000357857 KIF5AQ12840 1032 aa20.02■□□□□ 0.8
CLN3-204ENST00000357857 MBTPS1Q14703 1052 aa20.02■□□□□ 0.8
CLN3-204ENST00000357857 CCDC122Q5T0U0 273 aa20.02■□□□□ 0.8
CLN3-204ENST00000357857 C10orf76Q5T2E6 689 aa20.02■□□□□ 0.8
CLN3-204ENST00000357857 LRRC8DQ7L1W4 858 aa20.02■□□□□ 0.8
CLN3-204ENST00000357857 SLC47A2Q86VL8 602 aa20.02■□□□□ 0.8
CLN3-204ENST00000357857 UBR7Q8N806 425 aa20.02■□□□□ 0.8
CLN3-204ENST00000357857 SLC30A5Q8TAD4 765 aa20.02■□□□□ 0.8
CLN3-204ENST00000357857 SLC20A1Q8WUM9 679 aa20.02■□□□□ 0.8
CLN3-204ENST00000357857 C18orf25Q96B23 403 aaPredicted RBP20.02■□□□□ 0.8
CLN3-204ENST00000357857 HPDLQ96IR7 371 aa20.02■□□□□ 0.8
CLN3-204ENST00000357857 TSGA10Q9BZW7 698 aa20.02■□□□□ 0.8
CLN3-204ENST00000357857 NXF1Q9UBU9 619 aaKnown RBP20.02■□□□□ 0.8
CLN3-204ENST00000357857 TUBGCP4Q9UGJ1 667 aa20.02■□□□□ 0.8
CLN3-204ENST00000357857 NAGPAQ9UK23 515 aa20.02■□□□□ 0.8
CLN3-204ENST00000357857 NOCTQ9UK39 431 aaKnown RBP20.02■□□□□ 0.8
CLN3-204ENST00000357857 NENFQ9UMX5 172 aa20.02■□□□□ 0.8
CLN3-204ENST00000357857 KRT86O43790 486 aa20.02■□□□□ 0.79
CLN3-204ENST00000357857 PQBP1O60828 265 aaKnown RBP20.02■□□□□ 0.79
CLN3-204ENST00000357857 STAU1O95793 577 aaKnown RBP20.02■□□□□ 0.79
CLN3-204ENST00000357857 ABL1P00519 1130 aa20.02■□□□□ 0.79
CLN3-204ENST00000357857 CYP11B1P15538 503 aa20.02■□□□□ 0.79
CLN3-204ENST00000357857 ASPAP45381 313 aa20.02■□□□□ 0.79
CLN3-204ENST00000357857 BPIFB4P59827 614 aa20.02■□□□□ 0.79
CLN3-204ENST00000357857 NAB2Q15742 525 aa20.02■□□□□ 0.79
CLN3-204ENST00000357857 WDR72Q3MJ13 1102 aa20.02■□□□□ 0.79
CLN3-204ENST00000357857 ALKBH5Q6P6C2 394 aaKnown RBP20.02■□□□□ 0.79
CLN3-204ENST00000357857 SLC39A5Q6ZMH5 540 aa20.02■□□□□ 0.79
CLN3-204ENST00000357857 SCARA5Q6ZMJ2 495 aa20.02■□□□□ 0.79
CLN3-204ENST00000357857 MRPL10Q7Z7H8 261 aaKnown RBP20.02■□□□□ 0.79
CLN3-204ENST00000357857 NOP9Q86U38 636 aaKnown RBP20.02■□□□□ 0.79
CLN3-204ENST00000357857 GLYCTKQ8IVS8 523 aa20.02■□□□□ 0.79
CLN3-204ENST00000357857 ADAM2Q99965 735 aa20.02■□□□□ 0.79
CLN3-204ENST00000357857 LACRTQ9GZZ8 138 aa20.02■□□□□ 0.79
CLN3-204ENST00000357857 RNF19AQ9NV58 838 aa20.02■□□□□ 0.79
CLN3-204ENST00000357857 TRIM10Q9UDY6 481 aa20.02■□□□□ 0.79
CLN3-204ENST00000357857 POLIQ9UNA4 740 aa20.02■□□□□ 0.79
CLN3-204ENST00000357857 CNTN6Q9UQ52 1028 aa20.02■□□□□ 0.79
CLN3-204ENST00000357857 ZNF623O75123 536 aa20.01■□□□□ 0.79
CLN3-204ENST00000357857 ATN1P54259 1190 aaPredicted RBP20.01■□□□□ 0.79
CLN3-204ENST00000357857 YWHAEP62258 255 aaKnown RBP20.01■□□□□ 0.79
CLN3-204ENST00000357857 ETF1P62495 437 aaKnown RBP20.01■□□□□ 0.79
CLN3-204ENST00000357857 SMYD5Q6GMV2 418 aa20.01■□□□□ 0.79
CLN3-204ENST00000357857 TMEM270Q6UE05 265 aa20.01■□□□□ 0.79
CLN3-204ENST00000357857 RPUSD2Q8IZ73 545 aaKnown RBP20.01■□□□□ 0.79
CLN3-204ENST00000357857 ACP6Q9NPH0 428 aa20.01■□□□□ 0.79
CLN3-204ENST00000357857 SEPT11Q9NVA2 429 aaKnown RBP20.01■□□□□ 0.79
CLN3-204ENST00000357857 GUCA1BQ9UMX6 200 aa20.01■□□□□ 0.79
CLN3-204ENST00000357857 PJA2O43164 708 aa20■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms