RNA–Protein interactions for RNA: ENST00000347519.10

CHMP4A-201, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best) BASIC

Gene CHMP4A, Length 1,393 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-201ENST00000347519 TBX2Q13207 712 aaPredicted RBP20.46■□□□□ 0.87
CHMP4A-201ENST00000347519 PAN2Q504Q3 1202 aaKnown RBP20.46■□□□□ 0.87
CHMP4A-201ENST00000347519 KLHDC7AQ5VTJ3 777 aa20.46■□□□□ 0.87
CHMP4A-201ENST00000347519 SPECC1LQ69YQ0 1117 aa20.46■□□□□ 0.87
CHMP4A-201ENST00000347519 ARHGAP30Q7Z6I6 1101 aaPredicted RBP20.46■□□□□ 0.87
CHMP4A-201ENST00000347519 URGCPQ8TCY9 931 aa20.46■□□□□ 0.87
CHMP4A-201ENST00000347519 KAT5Q92993 513 aa20.46■□□□□ 0.87
CHMP4A-201ENST00000347519 TTYH3Q9C0H2 523 aa20.46■□□□□ 0.87
CHMP4A-201ENST00000347519 PLCB1Q9NQ66 1216 aa20.46■□□□□ 0.87
CHMP4A-201ENST00000347519 NUB1Q9Y5A7 615 aa20.46■□□□□ 0.87
CHMP4A-201ENST00000347519 ASS1P00966 412 aaKnown RBP20.46■□□□□ 0.87
CHMP4A-201ENST00000347519 KCNJ6P48051 423 aa20.46■□□□□ 0.87
CHMP4A-201ENST00000347519 RBP5P82980 135 aa20.46■□□□□ 0.87
CHMP4A-201ENST00000347519 CETN1Q12798 172 aa20.46■□□□□ 0.87
CHMP4A-201ENST00000347519 TRPC3Q13507 836 aa20.46■□□□□ 0.87
CHMP4A-201ENST00000347519 C9orf50Q5SZB4 431 aa20.46■□□□□ 0.87
CHMP4A-201ENST00000347519 DRC7Q8IY82 874 aa20.46■□□□□ 0.87
CHMP4A-201ENST00000347519 ABI1Q8IZP0 508 aa20.46■□□□□ 0.87
CHMP4A-201ENST00000347519 NEK11Q8NG66 645 aa20.46■□□□□ 0.87
CHMP4A-201ENST00000347519 PDLIM2Q96JY6 352 aa20.46■□□□□ 0.87
CHMP4A-201ENST00000347519 RC3H2Q9HBD1 1191 aaKnown RBP20.46■□□□□ 0.87
CHMP4A-201ENST00000347519 SLC38A7Q9NVC3 462 aa20.46■□□□□ 0.87
CHMP4A-201ENST00000347519 FHOD1Q9Y613 1164 aa20.46■□□□□ 0.87
CHMP4A-201ENST00000347519 HOXA2O43364 376 aa20.45■□□□□ 0.86
CHMP4A-201ENST00000347519 XPOTO43592 962 aaKnown RBP20.45■□□□□ 0.86
CHMP4A-201ENST00000347519 GYPCP04921 128 aa20.45■□□□□ 0.86
CHMP4A-201ENST00000347519 CLCNKBP51801 687 aa20.45■□□□□ 0.86
CHMP4A-201ENST00000347519 DSC1Q08554 894 aa20.45■□□□□ 0.86
CHMP4A-201ENST00000347519 TUSC3Q13454 348 aa20.45■□□□□ 0.86
CHMP4A-201ENST00000347519 IQCEQ6IPM2 695 aa20.45■□□□□ 0.86
CHMP4A-201ENST00000347519 CD300LGQ6UXG3 332 aa20.45■□□□□ 0.86
CHMP4A-201ENST00000347519 RRAGAQ7L523 313 aa20.45■□□□□ 0.86
CHMP4A-201ENST00000347519 CPLX3Q8WVH0 158 aa20.45■□□□□ 0.86
CHMP4A-201ENST00000347519 ZNF689Q96CS4 500 aaPredicted RBP20.45■□□□□ 0.86
CHMP4A-201ENST00000347519 NRDE2Q9H7Z3 1164 aa20.45■□□□□ 0.86
CHMP4A-201ENST00000347519 DNAJB4Q9UDY4 337 aa20.45■□□□□ 0.86
CHMP4A-201ENST00000347519 POLIQ9UNA4 740 aa20.45■□□□□ 0.86
CHMP4A-201ENST00000347519 F8W810 466 aa20.44■□□□□ 0.86
CHMP4A-201ENST00000347519 SPTLC1O15269 473 aa20.44■□□□□ 0.86
CHMP4A-201ENST00000347519 FXR1P51114 621 aaKnown RBP eCLIP20.44■□□□□ 0.86
CHMP4A-201ENST00000347519 POLR2FP61218 127 aaKnown RBP20.44■□□□□ 0.86
CHMP4A-201ENST00000347519 NOP14P78316 857 aaKnown RBP20.44■□□□□ 0.86
CHMP4A-201ENST00000347519 SGSM1Q2NKQ1 1148 aa20.44■□□□□ 0.86
CHMP4A-201ENST00000347519 ZNF699Q32M78 642 aa20.44■□□□□ 0.86
CHMP4A-201ENST00000347519 RASIP1Q5U651 963 aa20.44■□□□□ 0.86
CHMP4A-201ENST00000347519 COLGALT2Q8IYK4 626 aa20.44■□□□□ 0.86
CHMP4A-201ENST00000347519 C3orf58Q8NDZ4 430 aa20.44■□□□□ 0.86
CHMP4A-201ENST00000347519 HPDLQ96IR7 371 aa20.44■□□□□ 0.86
CHMP4A-201ENST00000347519 KREMEN1Q96MU8 473 aa20.44■□□□□ 0.86
CHMP4A-201ENST00000347519 NT5C1BQ96P26 610 aa20.44■□□□□ 0.86
CHMP4A-201ENST00000347519 NAA15Q9BXJ9 866 aaKnown RBP20.44■□□□□ 0.86
CHMP4A-201ENST00000347519 NLRC4Q9NPP4 1024 aa20.44■□□□□ 0.86
CHMP4A-201ENST00000347519 RNF216Q9NWF9 866 aaPredicted RBP20.44■□□□□ 0.86
CHMP4A-201ENST00000347519 APEX2Q9UBZ4 518 aa20.44■□□□□ 0.86
CHMP4A-201ENST00000347519 KIAA1671Q9BY89 1806 aa20.43■□□□□ 0.86
CHMP4A-201ENST00000347519 CEP290O15078 2479 aa20.43■□□□□ 0.86
CHMP4A-201ENST00000347519 PODXLO00592 558 aa20.43■□□□□ 0.86
CHMP4A-201ENST00000347519 UCHL3P15374 230 aa20.43■□□□□ 0.86
CHMP4A-201ENST00000347519 UPP1Q16831 310 aa20.43■□□□□ 0.86
CHMP4A-201ENST00000347519 BAP1Q92560 729 aa20.43■□□□□ 0.86
CHMP4A-201ENST00000347519 ARID3AQ99856 593 aa20.43■□□□□ 0.86
CHMP4A-201ENST00000347519 UBE2TQ9NPD8 197 aaPredicted RBP20.43■□□□□ 0.86
CHMP4A-201ENST00000347519 KANSL3Q9P2N6 904 aa20.43■□□□□ 0.86
CHMP4A-201ENST00000347519 DNAJC12Q9UKB3 198 aa20.43■□□□□ 0.86
CHMP4A-201ENST00000347519 H0YGN5 161 aa20.42■□□□□ 0.86
CHMP4A-201ENST00000347519 ZC3H11AO75152 810 aaKnown RBP eCLIP20.42■□□□□ 0.86
CHMP4A-201ENST00000347519 TRIM21P19474 475 aaKnown RBP20.42■□□□□ 0.86
CHMP4A-201ENST00000347519 ATICP31939 592 aa20.42■□□□□ 0.86
CHMP4A-201ENST00000347519 CASP14P31944 242 aa20.42■□□□□ 0.86
CHMP4A-201ENST00000347519 RNASELQ05823 741 aaKnown RBP20.42■□□□□ 0.86
CHMP4A-201ENST00000347519 ARID5BQ14865 1188 aa20.42■□□□□ 0.86
CHMP4A-201ENST00000347519 SHHQ15465 462 aa20.42■□□□□ 0.86
CHMP4A-201ENST00000347519 FIGNQ5HY92 759 aa20.42■□□□□ 0.86
CHMP4A-201ENST00000347519 WDR44Q5JSH3 913 aa20.42■□□□□ 0.86
CHMP4A-201ENST00000347519 HABP4Q5JVS0 413 aaKnown RBP20.42■□□□□ 0.86
CHMP4A-201ENST00000347519 GPIHBP1Q8IV16 184 aa20.42■□□□□ 0.86
CHMP4A-201ENST00000347519 LRRC52Q8N7C0 313 aa20.42■□□□□ 0.86
CHMP4A-201ENST00000347519 CWH43Q9H720 699 aa20.42■□□□□ 0.86
CHMP4A-201ENST00000347519 VRTNQ9H8Y1 702 aa20.42■□□□□ 0.86
CHMP4A-201ENST00000347519 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP20.42■□□□□ 0.867e-7■■■□□ 19
CHMP4A-201ENST00000347519 STAU1O95793 577 aaKnown RBP20.41■□□□□ 0.86
CHMP4A-201ENST00000347519 ITGB1P05556 798 aa20.41■□□□□ 0.86
CHMP4A-201ENST00000347519 PNMA6AP0CW24 399 aaPredicted RBP20.41■□□□□ 0.86
CHMP4A-201ENST00000347519 RPL9P32969 192 aaKnown RBP20.41■□□□□ 0.86
CHMP4A-201ENST00000347519 SCARA5Q6ZMJ2 495 aa20.41■□□□□ 0.86
CHMP4A-201ENST00000347519 PPM1KQ8N3J5 372 aa20.41■□□□□ 0.86
CHMP4A-201ENST00000347519 ANP32BQ92688 251 aaKnown RBP20.41■□□□□ 0.86
CHMP4A-201ENST00000347519 NUP58Q9BVL2 599 aa20.41■□□□□ 0.86
CHMP4A-201ENST00000347519 GPR88Q9GZN0 384 aa20.41■□□□□ 0.86
CHMP4A-201ENST00000347519 SDCBP2Q9H190 292 aa20.41■□□□□ 0.86
CHMP4A-201ENST00000347519 CEP72Q9P209 647 aa20.41■□□□□ 0.86
CHMP4A-201ENST00000347519 NXF1Q9UBU9 619 aaKnown RBP20.41■□□□□ 0.86
CHMP4A-201ENST00000347519 CAPN11Q9UMQ6 739 aa20.41■□□□□ 0.86
CHMP4A-201ENST00000347519 SLC4A7Q9Y6M7 1214 aa20.41■□□□□ 0.86
CHMP4A-201ENST00000347519 CLSTN1O94985 981 aa20.4■□□□□ 0.86
CHMP4A-201ENST00000347519 GJB5O95377 273 aa20.4■□□□□ 0.86
CHMP4A-201ENST00000347519 PBX3P40426 434 aa20.4■□□□□ 0.86
CHMP4A-201ENST00000347519 ASPAP45381 313 aa20.4■□□□□ 0.86
CHMP4A-201ENST00000347519 RAP1GAPP47736 663 aa20.4■□□□□ 0.86
CHMP4A-201ENST00000347519 SLC11A1P49279 550 aa20.4■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms