RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 GSG1L2A8MUP6 293 aa8.61□□□□□ -1.03
ATG4A-201ENST00000343524 PLEKHA8P1O95397 391 aa8.61□□□□□ -1.03
ATG4A-201ENST00000343524 GH1P01241 217 aa8.61□□□□□ -1.03
ATG4A-201ENST00000343524 ATP5BP06576 529 aaKnown RBP8.61□□□□□ -1.03
ATG4A-201ENST00000343524 UQCRBP14927 111 aa8.61□□□□□ -1.03
ATG4A-201ENST00000343524 IGHMBP2P38935 993 aaKnown RBP8.61□□□□□ -1.03
ATG4A-201ENST00000343524 CETN2P41208 172 aa8.61□□□□□ -1.03
ATG4A-201ENST00000343524 NEK2P51955 445 aa8.61□□□□□ -1.03
ATG4A-201ENST00000343524 PLOD1Q02809 727 aaPredicted RBP8.61□□□□□ -1.03
ATG4A-201ENST00000343524 TMEM62Q0P6H9 643 aa8.61□□□□□ -1.03
ATG4A-201ENST00000343524 ZBTB17Q13105 803 aa8.61□□□□□ -1.03
ATG4A-201ENST00000343524 DNAJC3Q13217 504 aa8.61□□□□□ -1.03
ATG4A-201ENST00000343524 THOC5Q13769 683 aaKnown RBP8.61□□□□□ -1.03
ATG4A-201ENST00000343524 TTLL12Q14166 644 aaPredicted RBP8.61□□□□□ -1.03
ATG4A-201ENST00000343524 TBCCQ15814 346 aa8.61□□□□□ -1.03
ATG4A-201ENST00000343524 TMCO4Q5TGY1 634 aa8.61□□□□□ -1.03
ATG4A-201ENST00000343524 TMEM53Q6P2H8 277 aa8.61□□□□□ -1.03
ATG4A-201ENST00000343524 DNAJC14Q6Y2X3 702 aaPredicted RBP8.61□□□□□ -1.03
ATG4A-201ENST00000343524 IRF2BP2Q7Z5L9 587 aa8.61□□□□□ -1.03
ATG4A-201ENST00000343524 CCDC25Q86WR0 208 aa8.61□□□□□ -1.03
ATG4A-201ENST00000343524 KBTBD2Q8IY47 623 aa8.61□□□□□ -1.03
ATG4A-201ENST00000343524 SYT2Q8N9I0 419 aaPredicted RBP8.61□□□□□ -1.03
ATG4A-201ENST00000343524 PROCA1Q8NCQ7 364 aaPredicted RBP8.61□□□□□ -1.03
ATG4A-201ENST00000343524 UHMK1Q8TAS1 419 aaKnown RBP8.61□□□□□ -1.03
ATG4A-201ENST00000343524 GRK7Q8WTQ7 553 aa8.61□□□□□ -1.03
ATG4A-201ENST00000343524 GAB3Q8WWW8 586 aa8.61□□□□□ -1.03
ATG4A-201ENST00000343524 GLG1Q92896 1179 aa8.61□□□□□ -1.03
ATG4A-201ENST00000343524 NMD3Q96D46 503 aaKnown RBP8.61□□□□□ -1.03
ATG4A-201ENST00000343524 CDK5RAP3Q96JB5 506 aa8.61□□□□□ -1.03
ATG4A-201ENST00000343524 MRPS26Q9BYN8 205 aaKnown RBP8.61□□□□□ -1.03
ATG4A-201ENST00000343524 SSU72Q9NP77 194 aaKnown RBP8.61□□□□□ -1.03
ATG4A-201ENST00000343524 PIH1D3Q9NQM4 214 aaKnown RBP8.61□□□□□ -1.03
ATG4A-201ENST00000343524 SCHIP1Q9P0W5 487 aaPredicted RBP8.61□□□□□ -1.03
ATG4A-201ENST00000343524 BIN2Q9UBW5 565 aaPredicted RBP8.61□□□□□ -1.03
ATG4A-201ENST00000343524 ZNHIT2Q9UHR6 403 aa8.61□□□□□ -1.03
ATG4A-201ENST00000343524 FAF1Q9UNN5 650 aaPredicted RBP8.61□□□□□ -1.03
ATG4A-201ENST00000343524 TRAF3IP3Q9Y228 551 aa8.61□□□□□ -1.03
ATG4A-201ENST00000343524 MTO1Q9Y2Z2 717 aaKnown RBP8.61□□□□□ -1.03
ATG4A-201ENST00000343524 SBDSQ9Y3A5 250 aaKnown RBP eCLIP8.61□□□□□ -1.03
ATG4A-201ENST00000343524 KANSL1LA0AUZ9 987 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 HTR3EA5X5Y0 456 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 A6NJR5 290 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 RASA4BC9J798 803 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 E9PBE3 544 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 TRAF5O00463 557 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 DLL1O00548 723 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 RASA4O43374 803 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 CSDE1O75534 798 aaKnown RBP8.6□□□□□ -1.03
ATG4A-201ENST00000343524 STK10O94804 968 aaKnown RBP8.6□□□□□ -1.03
ATG4A-201ENST00000343524 ACSL3O95573 720 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 MMP10P09238 476 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 SPATA31D3P0C874 917 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 ESRRAP11474 423 aaPredicted RBP8.6□□□□□ -1.03
ATG4A-201ENST00000343524 S100A1P23297 94 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 FOXN2P32314 431 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 PGM1P36871 562 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 NEK3P51956 506 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 PPATQ06203 517 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 CTC1Q2NKJ3 1217 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 CCDC153Q494R4 210 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 METTL24Q5JXM2 366 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 SYCP2LQ5T4T6 812 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 THOC7Q6I9Y2 204 aaKnown RBP8.6□□□□□ -1.03
ATG4A-201ENST00000343524 SPATA31D4Q6ZUB0 917 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 RASSF3Q86WH2 238 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 SFR1Q86XK3 245 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 PDSS2Q86YH6 399 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 TDRPQ86YL5 185 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 RELL1Q8IUW5 271 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 CCDC105Q8IYK2 499 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 BBS5Q8N3I7 341 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 SCAIQ8N9R8 606 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 PLEKHO2Q8TD55 490 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 DTX3LQ8TDB6 740 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 SCFD1Q8WVM8 642 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 JADE3Q92613 823 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 LARP4BQ92615 738 aaKnown RBP8.6□□□□□ -1.03
ATG4A-201ENST00000343524 SNF8Q96H20 258 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 ZNF594Q96JF6 807 aaPredicted RBP8.6□□□□□ -1.03
ATG4A-201ENST00000343524 PRICKLE1Q96MT3 831 aaPredicted RBP8.6□□□□□ -1.03
ATG4A-201ENST00000343524 ZMAT2Q96NC0 199 aaKnown RBP8.6□□□□□ -1.03
ATG4A-201ENST00000343524 HNRNPABQ99729 332 aaKnown RBP8.6□□□□□ -1.03
ATG4A-201ENST00000343524 DDX50Q9BQ39 737 aaKnown RBP8.6□□□□□ -1.03
ATG4A-201ENST00000343524 TRIM55Q9BYV6 548 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 GOLPH3Q9H4A6 298 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 MLXIPLQ9NP71 852 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 PICK1Q9NRD5 415 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 METTL5Q9NRN9 209 aaKnown RBP8.6□□□□□ -1.03
ATG4A-201ENST00000343524 NLRP2Q9NX02 1062 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 CROTQ9UKG9 612 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 HBS1LQ9Y450 684 aaKnown RBP8.6□□□□□ -1.03
ATG4A-201ENST00000343524 PCDHA3Q9Y5H8 950 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 UBR3Q6ZT12 1888 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.6□□□□□ -1.03
ATG4A-201ENST00000343524 PP2D1A8MPX8 630 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 NBPF26B4DH59 902 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 IPO5O00410 1097 aaKnown RBP8.6□□□□□ -1.03
ATG4A-201ENST00000343524 CDK4P11802 303 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 PAX3P23760 479 aa8.6□□□□□ -1.03
ATG4A-201ENST00000343524 VARSP26640 1264 aaKnown RBP8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms