RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 ZNF384Q8TF68 577 aa15.56■□□□□ 0.08
TCOF1-201ENST00000323668 TMEM143Q96AN5 459 aa15.56■□□□□ 0.08
TCOF1-201ENST00000323668 CENPTQ96BT3 561 aa15.56■□□□□ 0.08
TCOF1-201ENST00000323668 MAGEB18Q96M61 343 aa15.56■□□□□ 0.08
TCOF1-201ENST00000323668 SLC13A1Q9BZW2 595 aa15.56■□□□□ 0.08
TCOF1-201ENST00000323668 SLC38A10Q9HBR0 1119 aa15.56■□□□□ 0.08
TCOF1-201ENST00000323668 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.56■□□□□ 0.08
TCOF1-201ENST00000323668 KDM3BQ7LBC6 1761 aa15.56■□□□□ 0.08
TCOF1-201ENST00000323668 IGSF9BQ9UPX0 1349 aa15.56■□□□□ 0.08
TCOF1-201ENST00000323668 ANP32DO95626 131 aa15.56■□□□□ 0.08
TCOF1-201ENST00000323668 LVRNQ6Q4G3 990 aa15.56■□□□□ 0.08
TCOF1-201ENST00000323668 LNX1Q8TBB1 728 aaPredicted RBP15.56■□□□□ 0.08
TCOF1-201ENST00000323668 FAM167AQ96KS9 214 aa15.56■□□□□ 0.08
TCOF1-201ENST00000323668 TSSK1BQ9BXA7 367 aa15.56■□□□□ 0.08
TCOF1-201ENST00000323668 MOV10L1Q9BXT6 1211 aaKnown RBP15.56■□□□□ 0.08
TCOF1-201ENST00000323668 APOBEC2Q9Y235 224 aaKnown RBP15.56■□□□□ 0.08
TCOF1-201ENST00000323668 PCDHA3Q9Y5H8 950 aa15.56■□□□□ 0.08
TCOF1-201ENST00000323668 ASTN1O14525 1302 aa15.55■□□□□ 0.08
TCOF1-201ENST00000323668 MEIS2O14770 477 aa15.55■□□□□ 0.08
TCOF1-201ENST00000323668 TAL1P17542 331 aaPredicted RBP15.55■□□□□ 0.08
TCOF1-201ENST00000323668 CDH6P55285 790 aa15.55■□□□□ 0.08
TCOF1-201ENST00000323668 TKFCQ3LXA3 575 aa15.55■□□□□ 0.08
TCOF1-201ENST00000323668 ERMARDQ5T6L9 678 aa15.55■□□□□ 0.08
TCOF1-201ENST00000323668 C1orf186Q6ZWK4 172 aa15.55■□□□□ 0.08
TCOF1-201ENST00000323668 TEX2Q8IWB9 1127 aa15.55■□□□□ 0.08
TCOF1-201ENST00000323668 TTC16Q8NEE8 873 aa15.55■□□□□ 0.08
TCOF1-201ENST00000323668 POP1Q99575 1024 aaKnown RBP15.55■□□□□ 0.08
TCOF1-201ENST00000323668 VCX3AQ9NNX9 186 aa15.55■□□□□ 0.08
TCOF1-201ENST00000323668 CHD2O14647 1828 aaKnown RBP15.55■□□□□ 0.08
TCOF1-201ENST00000323668 KITP10721 976 aa15.55■□□□□ 0.08
TCOF1-201ENST00000323668 DRG2P55039 364 aaKnown RBP15.55■□□□□ 0.08
TCOF1-201ENST00000323668 C1orf146Q5VVC0 180 aa15.55■□□□□ 0.08
TCOF1-201ENST00000323668 ARHGEF19Q8IW93 802 aa15.55■□□□□ 0.08
TCOF1-201ENST00000323668 FGFBP2Q9BYJ0 223 aa15.55■□□□□ 0.08
TCOF1-201ENST00000323668 ZNF70Q9UC06 446 aaPredicted RBP15.55■□□□□ 0.08
TCOF1-201ENST00000323668 FRMPD4Q14CM0 1322 aa15.55■□□□□ 0.08
TCOF1-201ENST00000323668 PSTPIP1O43586 416 aa15.55■□□□□ 0.08
TCOF1-201ENST00000323668 EXTL3O43909 919 aa15.55■□□□□ 0.08
TCOF1-201ENST00000323668 NOL3O60936 208 aaKnown RBP15.55■□□□□ 0.08
TCOF1-201ENST00000323668 ARSHQ5FYA8 562 aa15.55■□□□□ 0.08
TCOF1-201ENST00000323668 SV2AQ7L0J3 742 aa15.55■□□□□ 0.08
TCOF1-201ENST00000323668 MIPOL1Q8TD10 442 aa15.55■□□□□ 0.08
TCOF1-201ENST00000323668 TAS2R14Q9NYV8 317 aa15.55■□□□□ 0.08
TCOF1-201ENST00000323668 CIITAP33076 1130 aa15.55■□□□□ 0.08
TCOF1-201ENST00000323668 FAM102AQ5T9C2 384 aaPredicted RBP15.55■□□□□ 0.08
TCOF1-201ENST00000323668 RAPH1Q70E73 1250 aa15.55■□□□□ 0.08
TCOF1-201ENST00000323668 C1orf131Q8NDD1 294 aaKnown RBP15.55■□□□□ 0.08
TCOF1-201ENST00000323668 TMC2Q8TDI7 906 aa15.55■□□□□ 0.08
TCOF1-201ENST00000323668 SHISA4Q96DD7 197 aa15.55■□□□□ 0.08
TCOF1-201ENST00000323668 HOXC10Q9NYD6 342 aa15.55■□□□□ 0.08
TCOF1-201ENST00000323668 PHTF1Q9UMS5 762 aa15.55■□□□□ 0.08
TCOF1-201ENST00000323668 NPTX2P47972 431 aa15.54■□□□□ 0.08
TCOF1-201ENST00000323668 RPS6P62753 249 aaKnown RBP15.54■□□□□ 0.08
TCOF1-201ENST00000323668 PPP2R5CQ13362 524 aa15.54■□□□□ 0.08
TCOF1-201ENST00000323668 CCNG2Q16589 344 aa15.54■□□□□ 0.08
TCOF1-201ENST00000323668 ZCWPW2Q504Y3 356 aa15.54■□□□□ 0.08
TCOF1-201ENST00000323668 RPAP3Q9H6T3 665 aaPredicted RBP15.54■□□□□ 0.08
TCOF1-201ENST00000323668 ATP6V1G2O95670 118 aa15.54■□□□□ 0.08
TCOF1-201ENST00000323668 GTF2H1P32780 548 aa15.54■□□□□ 0.08
TCOF1-201ENST00000323668 PGM1P36871 562 aa15.54■□□□□ 0.08
TCOF1-201ENST00000323668 KLF6Q99612 283 aaPredicted RBP15.54■□□□□ 0.08
TCOF1-201ENST00000323668 MED10Q9BTT4 135 aa15.54■□□□□ 0.08
TCOF1-201ENST00000323668 NUF2Q9BZD4 464 aa15.54■□□□□ 0.08
TCOF1-201ENST00000323668 RANBP17Q9H2T7 1088 aaKnown RBP15.54■□□□□ 0.08
TCOF1-201ENST00000323668 NAALADL1Q9UQQ1 740 aa15.54■□□□□ 0.08
TCOF1-201ENST00000323668 TMX2Q9Y320 296 aa15.54■□□□□ 0.08
TCOF1-201ENST00000323668 ZC3H11AO75152 810 aaKnown RBP eCLIP15.54■□□□□ 0.08
TCOF1-201ENST00000323668 PROSCO94903 275 aa15.54■□□□□ 0.08
TCOF1-201ENST00000323668 DUPD1Q68J44 220 aa15.54■□□□□ 0.08
TCOF1-201ENST00000323668 BZW1Q7L1Q6 419 aaKnown RBP15.54■□□□□ 0.08
TCOF1-201ENST00000323668 DHX38Q92620 1227 aaKnown RBP15.54■□□□□ 0.08
TCOF1-201ENST00000323668 PRMT6Q96LA8 375 aaPredicted RBP15.54■□□□□ 0.08
TCOF1-201ENST00000323668 TTC1Q99614 292 aa15.54■□□□□ 0.08
TCOF1-201ENST00000323668 M0QYV0 167 aa15.54■□□□□ 0.08
TCOF1-201ENST00000323668 CST8O60676 142 aa15.54■□□□□ 0.08
TCOF1-201ENST00000323668 SHBGP04278 402 aa15.54■□□□□ 0.08
TCOF1-201ENST00000323668 EFNA5P52803 228 aa15.54■□□□□ 0.08
TCOF1-201ENST00000323668 APOBEC3HQ6NTF7 200 aaKnown RBP15.54■□□□□ 0.08
TCOF1-201ENST00000323668 SESTD1Q86VW0 696 aa15.54■□□□□ 0.08
TCOF1-201ENST00000323668 ACAD9Q9H845 621 aa15.54■□□□□ 0.08
TCOF1-201ENST00000323668 MAFGO15525 162 aa15.53■□□□□ 0.08
TCOF1-201ENST00000323668 CRCPO75575 148 aa15.53■□□□□ 0.08
TCOF1-201ENST00000323668 ICAM1P05362 532 aa15.53■□□□□ 0.08
TCOF1-201ENST00000323668 MAPTP10636 758 aaKnown RBP15.53■□□□□ 0.08
TCOF1-201ENST00000323668 SDC4P31431 198 aa15.53■□□□□ 0.08
TCOF1-201ENST00000323668 RARRES1P49788 294 aa15.53■□□□□ 0.08
TCOF1-201ENST00000323668 HIPK4Q8NE63 616 aa15.53■□□□□ 0.08
TCOF1-201ENST00000323668 ATXN2LQ8WWM7 1075 aaKnown RBP15.53■□□□□ 0.08
TCOF1-201ENST00000323668 SLC5A5Q92911 643 aa15.53■□□□□ 0.08
TCOF1-201ENST00000323668 MKL1Q969V6 931 aa15.53■□□□□ 0.08
TCOF1-201ENST00000323668 TAAR1Q96RJ0 339 aa15.53■□□□□ 0.08
TCOF1-201ENST00000323668 WWP1Q9H0M0 922 aa15.53■□□□□ 0.08
TCOF1-201ENST00000323668 WDR35Q9P2L0 1181 aa15.53■□□□□ 0.08
TCOF1-201ENST00000323668 TLK1Q9UKI8 766 aa15.53■□□□□ 0.08
TCOF1-201ENST00000323668 ABCC6O95255 1503 aa15.53■□□□□ 0.08
TCOF1-201ENST00000323668 RASSF10A6NK89 507 aa15.53■□□□□ 0.08
TCOF1-201ENST00000323668 CYP3A4P08684 503 aa15.53■□□□□ 0.08
TCOF1-201ENST00000323668 SPATA31C1P0DKV0 1188 aa15.53■□□□□ 0.08
TCOF1-201ENST00000323668 IFRD2Q12894 506 aaPredicted RBP15.53■□□□□ 0.08
TCOF1-201ENST00000323668 MTM1Q13496 603 aa15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms