RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 SMNDC1O75940 238 aaKnown RBP eCLIP11.02□□□□□ -0.65
UPF3B-201ENST00000276201 GJA9P57773 515 aa11.02□□□□□ -0.65
UPF3B-201ENST00000276201 MYO1EQ12965 1108 aa11.02□□□□□ -0.65
UPF3B-201ENST00000276201 BLMHQ13867 455 aa11.02□□□□□ -0.65
UPF3B-201ENST00000276201 PGM5Q15124 567 aa11.02□□□□□ -0.65
UPF3B-201ENST00000276201 STXBP2Q15833 593 aa11.02□□□□□ -0.65
UPF3B-201ENST00000276201 SPDYAQ5MJ70 313 aa11.02□□□□□ -0.65
UPF3B-201ENST00000276201 NELFCDQ8IXH7 590 aa11.02□□□□□ -0.65
UPF3B-201ENST00000276201 SLFN12Q8IYM2 578 aa11.02□□□□□ -0.65
UPF3B-201ENST00000276201 SYT2Q8N9I0 419 aaPredicted RBP11.02□□□□□ -0.65
UPF3B-201ENST00000276201 KLHDC9Q8NEP7 349 aa11.02□□□□□ -0.65
UPF3B-201ENST00000276201 CTNNBL1Q8WYA6 563 aaPredicted RBP11.02□□□□□ -0.65
UPF3B-201ENST00000276201 WDR11Q9BZH6 1224 aa11.02□□□□□ -0.65
UPF3B-201ENST00000276201 GOLPH3Q9H4A6 298 aa11.02□□□□□ -0.65
UPF3B-201ENST00000276201 ECT2Q9H8V3 914 aa11.02□□□□□ -0.65
UPF3B-201ENST00000276201 RXFP1Q9HBX9 757 aa11.02□□□□□ -0.65
UPF3B-201ENST00000276201 AGAP1Q9UPQ3 857 aa11.02□□□□□ -0.65
UPF3B-201ENST00000276201 RASGRF2O14827 1237 aa11.02□□□□□ -0.65
UPF3B-201ENST00000276201 BACH1O14867 736 aa11.02□□□□□ -0.65
UPF3B-201ENST00000276201 EIF3DO15371 548 aaKnown RBP eCLIP11.02□□□□□ -0.65
UPF3B-201ENST00000276201 ATP5HO75947 161 aa11.02□□□□□ -0.65
UPF3B-201ENST00000276201 NEBLO76041 1014 aa11.02□□□□□ -0.65
UPF3B-201ENST00000276201 UBOX5O94941 541 aa11.02□□□□□ -0.65
UPF3B-201ENST00000276201 HOXD13P35453 343 aa11.02□□□□□ -0.65
UPF3B-201ENST00000276201 GIT2Q14161 759 aa11.02□□□□□ -0.65
UPF3B-201ENST00000276201 SLC29A2Q14542 456 aa11.02□□□□□ -0.65
UPF3B-201ENST00000276201 PARP6Q2NL67 630 aa11.02□□□□□ -0.65
UPF3B-201ENST00000276201 DUSP28Q4G0W2 176 aa11.02□□□□□ -0.65
UPF3B-201ENST00000276201 CCSAPQ6IQ19 270 aaPredicted RBP11.02□□□□□ -0.65
UPF3B-201ENST00000276201 RNF180Q86T96 592 aa11.02□□□□□ -0.65
UPF3B-201ENST00000276201 TLK2Q86UE8 772 aa11.02□□□□□ -0.65
UPF3B-201ENST00000276201 PRMT1Q99873 361 aaKnown RBP11.02□□□□□ -0.65
UPF3B-201ENST00000276201 ABCF3Q9NUQ8 709 aa11.02□□□□□ -0.65
UPF3B-201ENST00000276201 PHF24Q9UPV7 400 aa11.02□□□□□ -0.65
UPF3B-201ENST00000276201 KIAA1217Q5T5P2 1943 aa11.01□□□□□ -0.65
UPF3B-201ENST00000276201 A6NHS1 94 aa11.01□□□□□ -0.65
UPF3B-201ENST00000276201 RGS20O76081 388 aa11.01□□□□□ -0.65
UPF3B-201ENST00000276201 ARIH2O95376 493 aa11.01□□□□□ -0.65
UPF3B-201ENST00000276201 CLTAP09496 248 aa11.01□□□□□ -0.65
UPF3B-201ENST00000276201 MYCLP12524 364 aaPredicted RBP11.01□□□□□ -0.65
UPF3B-201ENST00000276201 GAP43P17677 238 aa11.01□□□□□ -0.65
UPF3B-201ENST00000276201 CST5P28325 142 aaPredicted RBP11.01□□□□□ -0.65
UPF3B-201ENST00000276201 NKX3-2P78367 333 aa11.01□□□□□ -0.65
UPF3B-201ENST00000276201 IFI35P80217 286 aaPredicted RBP11.01□□□□□ -0.65
UPF3B-201ENST00000276201 TBC1D1Q86TI0 1168 aaPredicted RBP11.01□□□□□ -0.65
UPF3B-201ENST00000276201 VSIG10LQ86VR7 867 aa11.01□□□□□ -0.65
UPF3B-201ENST00000276201 FBXO25Q8TCJ0 367 aa11.01□□□□□ -0.65
UPF3B-201ENST00000276201 CKAP2Q8WWK9 683 aa11.01□□□□□ -0.65
UPF3B-201ENST00000276201 HTATIP2Q9BUP3 242 aa11.01□□□□□ -0.65
UPF3B-201ENST00000276201 SENP6Q9GZR1 1112 aaPredicted RBP11.01□□□□□ -0.65
UPF3B-201ENST00000276201 KIAA1024Q9UPX6 916 aa11.01□□□□□ -0.65
UPF3B-201ENST00000276201 NR2E1Q9Y466 385 aa11.01□□□□□ -0.65
UPF3B-201ENST00000276201 ACTL7BQ9Y614 415 aa11.01□□□□□ -0.65
UPF3B-201ENST00000276201 E9PMD0 336 aa11.01□□□□□ -0.65
UPF3B-201ENST00000276201 EVI5O60447 810 aa11.01□□□□□ -0.65
UPF3B-201ENST00000276201 ATP2C2O75185 946 aa11.01□□□□□ -0.65
UPF3B-201ENST00000276201 NR3C1P04150 777 aa11.01□□□□□ -0.65
UPF3B-201ENST00000276201 VIMP08670 466 aaKnown RBP11.01□□□□□ -0.65
UPF3B-201ENST00000276201 C6orf222P0C671 652 aaPredicted RBP11.01□□□□□ -0.65
UPF3B-201ENST00000276201 CCND2P30279 289 aa11.01□□□□□ -0.65
UPF3B-201ENST00000276201 CCDC38Q502W7 563 aa11.01□□□□□ -0.65
UPF3B-201ENST00000276201 CCDC62Q6P9F0 684 aa11.01□□□□□ -0.65
UPF3B-201ENST00000276201 SEPT14Q6ZU15 432 aa11.01□□□□□ -0.65
UPF3B-201ENST00000276201 UBL4BQ8N7F7 174 aa11.01□□□□□ -0.65
UPF3B-201ENST00000276201 ZNF570Q96NI8 536 aa11.01□□□□□ -0.65
UPF3B-201ENST00000276201 RAB3IPQ96QF0 476 aaPredicted RBP11.01□□□□□ -0.65
UPF3B-201ENST00000276201 TRIM7Q9C029 511 aa11.01□□□□□ -0.65
UPF3B-201ENST00000276201 ERVK-5Q9HDB9 667 aa11.01□□□□□ -0.65
UPF3B-201ENST00000276201 OLFML3Q9NRN5 406 aa11.01□□□□□ -0.65
UPF3B-201ENST00000276201 GCNT4Q9P109 453 aa11.01□□□□□ -0.65
UPF3B-201ENST00000276201 WHRNQ9P202 907 aa11.01□□□□□ -0.65
UPF3B-201ENST00000276201 AJAP1Q9UKB5 411 aaPredicted RBP11.01□□□□□ -0.65
UPF3B-201ENST00000276201 DYNC1LI2O43237 492 aaPredicted RBP11□□□□□ -0.65
UPF3B-201ENST00000276201 AKAP3O75969 853 aa11□□□□□ -0.65
UPF3B-201ENST00000276201 EYA4O95677 639 aa11□□□□□ -0.65
UPF3B-201ENST00000276201 RPL21P46778 160 aaKnown RBP11□□□□□ -0.65
UPF3B-201ENST00000276201 PLTPP55058 493 aa11□□□□□ -0.65
UPF3B-201ENST00000276201 MRPS9P82933 396 aaKnown RBP11□□□□□ -0.65
UPF3B-201ENST00000276201 BEX3Q00994 111 aa11□□□□□ -0.65
UPF3B-201ENST00000276201 KCNA10Q16322 511 aa11□□□□□ -0.65
UPF3B-201ENST00000276201 MIS18BP1Q6P0N0 1132 aa11□□□□□ -0.65
UPF3B-201ENST00000276201 SYDE1Q6ZW31 735 aaPredicted RBP11□□□□□ -0.65
UPF3B-201ENST00000276201 PRELID2Q8N945 189 aa11□□□□□ -0.65
UPF3B-201ENST00000276201 ERMNQ8TAM6 284 aa11□□□□□ -0.65
UPF3B-201ENST00000276201 COPS5Q92905 334 aa11□□□□□ -0.65
UPF3B-201ENST00000276201 TSEN34Q9BSV6 310 aaKnown RBP11□□□□□ -0.65
UPF3B-201ENST00000276201 AP5M1Q9H0R1 490 aa11□□□□□ -0.65
UPF3B-201ENST00000276201 SPC25Q9HBM1 224 aa11□□□□□ -0.65
UPF3B-201ENST00000276201 LGALS13Q9UHV8 139 aa11□□□□□ -0.65
UPF3B-201ENST00000276201 SNX24Q9Y343 169 aa11□□□□□ -0.65
UPF3B-201ENST00000276201 Q9Y3F1 56 aa11□□□□□ -0.65
UPF3B-201ENST00000276201 TXNP10599 105 aaKnown RBP10.99□□□□□ -0.65
UPF3B-201ENST00000276201 RPA1P27694 616 aa10.99□□□□□ -0.65
UPF3B-201ENST00000276201 MSH2P43246 934 aa10.99□□□□□ -0.65
UPF3B-201ENST00000276201 ACLYP53396 1101 aa10.99□□□□□ -0.65
UPF3B-201ENST00000276201 TTLL4Q14679 1199 aa10.99□□□□□ -0.65
UPF3B-201ENST00000276201 PPP2R5AQ15172 486 aa10.99□□□□□ -0.65
UPF3B-201ENST00000276201 ENOX2Q16206 610 aaKnown RBP10.99□□□□□ -0.65
UPF3B-201ENST00000276201 LRRC26Q2I0M4 334 aa10.99□□□□□ -0.65
UPF3B-201ENST00000276201 EXOC3L1Q86VI1 746 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms