RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Wnt10bP48614 389 aa16.38■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Gpc4P51655 557 aa16.38■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Nfe2Q07279 373 aa16.38■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Oog3Q3UWY1 500 aa16.38■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 ChukQ60680 745 aa16.38■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Arhgap15Q811M1 481 aa16.38■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Dnaaf1Q9D2H9 634 aa16.38■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Usp4P35123 962 aa16.38■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Gpr180Q8BPS4 441 aa16.38■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Atg16l1Q8C0J2 607 aa16.38■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Krt5Q922U2 580 aa16.38■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Hsf3D0VYS2 492 aa16.38■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Npr3P70180 536 aa16.38■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Oca2Q62052 833 aa16.38■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Ccdc154Q6RUT8 657 aa16.38■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Smg5Q6ZPY2 1017 aa16.38■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 NrcamQ810U4 1256 aa16.38■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Heatr3Q8BQM4 679 aa16.38■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Ccdc159Q8C963 411 aa16.38■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Tasp1Q8R1G1 420 aa16.38■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Itpripl1A2ASA8 547 aa16.37■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Serpinb3aG3X9V8 387 aa16.37■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Arhgap17Q3UIA2 846 aa16.37■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Rnf168Q80XJ2 565 aa16.37■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Ccdc137Q8R0K4 290 aaKnown RBP16.37■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 PlvapQ91VC4 438 aa16.37■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Vta1Q9CR26 309 aa16.37■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Smyd3Q9CWR2 428 aa16.37■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Celf5D3Z4T1 395 aaKnown RBP16.37■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 FdxrQ61578 494 aa16.37■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Ppp4r4Q8C0Y0 875 aa16.37■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Sept10Q8C650 452 aa16.37■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Onecut3Q8K557 490 aa16.37■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 FktnQ8R507 461 aa16.37■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Olfr1494Q8VGP8 315 aa16.37■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Ttc1Q91Z38 292 aa16.37■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Xpo6Q924Z6 1125 aa16.37■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Q9CYI0 393 aa16.37■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Abt1Q9QYL7 269 aaKnown RBP16.37■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Hspa8P63017 646 aaKnown RBP16.37■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Smad1P70340 465 aa16.37■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 St13Q99L47 371 aaKnown RBP16.37■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Mrpl4Q9DCU6 294 aaKnown RBP16.37■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Ddx20Q9JJY4 825 aaKnown RBP16.37■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 9130409I23RikQ3TS87 320 aa16.37■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Cyfip2Q5SQX6 1253 aa16.37■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Ppp1r12bQ8BG95 976 aa16.37■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Trpa1Q8BLA8 1125 aa16.37■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Armc6Q8BNU0 468 aa16.37■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 PreplQ8C167 725 aa16.37■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 NemfQ8CCP0 1064 aaKnown RBP16.37■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 HyiQ8R1F5 277 aa16.37■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Rhobtb2Q91V93 728 aa16.37■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Tex9Q9D845 387 aa16.37■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Map3k20Q9ESL4 802 aaKnown RBP16.37■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Zfp212G3X8R7 492 aa16.36■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Kcnn2P58390 839 aa16.36■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 RalaP63321 206 aa16.36■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Klra6Q60653 266 aa16.36■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Ugt1a9Q62452 528 aa16.36■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Enoph1Q8BGB7 257 aa16.36■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Bzw1Q9CQC6 419 aaKnown RBP16.36■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Ska2Q9CR46 120 aa16.36■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Prpf4Q9DAW6 521 aaKnown RBP16.36■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 ZfaP23607 742 aa16.36■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Krt26Q3TRJ4 462 aa16.36■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Mettl17Q3U2U7 461 aa16.36■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 PighQ5M9N4 188 aa16.36■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Adad1Q5SUE7 619 aa16.36■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Tmc3Q7TQ69 1130 aa16.36■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Best2Q8BGM5 508 aa16.36■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Suds3Q8BR65 328 aa16.36■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Psip1Q99JF8 528 aaKnown RBP16.36■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Zfp839E9PUU5 921 aa16.36■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 LeprP48356 1162 aa16.36■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Stip1Q60864 543 aaKnown RBP16.36■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 PnocQ64387 187 aa16.36■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 MajinQ9D992 256 aa16.36■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Serpinb6cW4VSP4 379 aa16.36■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Kpna2P52293 529 aaKnown RBP16.36■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 TdgP56581 421 aa16.36■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Cyth2P63034 400 aaKnown RBP16.36■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Ccdc50Q810U5 305 aaKnown RBP16.36■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Prpf31Q8CCF0 499 aaKnown RBP16.36■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 HibchQ8QZS1 385 aa16.36■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Trim54Q9ERP3 366 aa16.36■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Akap5D3YVF0 745 aa16.35■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Csf1rP09581 977 aa16.35■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Usp10P52479 792 aaKnown RBP16.35■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 PkmP52480 531 aaKnown RBP16.35■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Trmt10cQ3UFY8 414 aaKnown RBP16.35■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Klrg2Q3UM83 387 aa16.35■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Dph1Q5NCQ5 438 aa16.35■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Rd3Q8BRE0 195 aa16.35■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Ttc22Q8C159 568 aa16.35■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Dennd2aQ8C4S8 1000 aa16.35■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Maml3D4QGC2 1135 aa16.35■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 MycP01108 439 aa16.35■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 PapolaQ61183 739 aa16.35■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Zrsr1Q64707 428 aa16.35■□□□□ 0.21
Retrieved 100 of 22,080 RNA–protein pairs in 23 ms